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Searched refs:subj_masks (Results 1 – 18 of 18) sorted by relevance

/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/blast/api/
H A Dblast_seqalign.cpp1552 TSeqLocInfoVector & subj_masks) in BlastHitList2SeqAlign_OMF() argument
1596 subj_masks.push_back(masks); in BlastHitList2SeqAlign_OMF()
1661 subj_masks.clear(); in PhiBlastResults2SeqAlign_OMF()
1662 subj_masks.resize(pattern_info->num_patterns); in PhiBlastResults2SeqAlign_OMF()
1825 subj_masks[qindex].push_back(masks); in s_BLAST_OneSubjectResults2CSeqAlign()
1913 subj_masks.clear(); in s_BlastResults2SeqAlignSequenceCmp_OMF()
1914 subj_masks.resize(num_of_queries *seqinfo_size); in s_BlastResults2SeqAlignSequenceCmp_OMF()
1955 subj_masks.clear(); in s_BlastResults2SeqAlignDatabaseSearch_OMF()
1956 subj_masks.resize(results->num_queries); in s_BlastResults2SeqAlignDatabaseSearch_OMF()
1989 vector<TSeqLocInfoVector>& subj_masks, in LocalBlastResults2SeqAlign() argument
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H A Dbl2seq.cpp229 TSeqLocInfoVector subj_masks; in GetFilteredSubjectRegions() local
230 (*res)->GetSubjectMasks(subj_masks); in GetFilteredSubjectRegions()
231 retval.push_back(subj_masks); in GetFilteredSubjectRegions()
H A Dblast_results.cpp335 CSearchResults::GetSubjectMasks(TSeqLocInfoVector& subj_masks) const in GetSubjectMasks()
337 subj_masks = m_SubjectMasks; in GetSubjectMasks()
341 CSearchResults::SetSubjectMasks(const TSeqLocInfoVector& subj_masks) in SetSubjectMasks() argument
344 copy(subj_masks.begin(), subj_masks.end(), back_inserter(m_SubjectMasks)); in SetSubjectMasks()
H A Dtraceback_stage.cpp266 vector<TSeqLocInfoVector> subj_masks; in Run() local
274 subj_masks, in Run()
289 subj_masks, in Run()
H A Dblast_aux_priv.cpp311 const vector<TSeqLocInfoVector>& subj_masks, in BlastBuildSearchResultSet() argument
360 if (subj_masks.size() == retval->size()) { in BlastBuildSearchResultSet()
362 (*retval)[i].SetSubjectMasks(subj_masks[i]); in BlastBuildSearchResultSet()
H A Dblast_seqalign.hpp127 vector<TSeqLocInfoVector>& subj_masks,
H A Dblast_aux_priv.hpp168 const vector<TSeqLocInfoVector>& subj_masks,
/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/algo/blast/api/
H A Dblast_seqalign.cpp1552 TSeqLocInfoVector & subj_masks) in BlastHitList2SeqAlign_OMF() argument
1596 subj_masks.push_back(masks); in BlastHitList2SeqAlign_OMF()
1661 subj_masks.clear(); in PhiBlastResults2SeqAlign_OMF()
1662 subj_masks.resize(pattern_info->num_patterns); in PhiBlastResults2SeqAlign_OMF()
1825 subj_masks[qindex].push_back(masks); in s_BLAST_OneSubjectResults2CSeqAlign()
1913 subj_masks.clear(); in s_BlastResults2SeqAlignSequenceCmp_OMF()
1914 subj_masks.resize(num_of_queries *seqinfo_size); in s_BlastResults2SeqAlignSequenceCmp_OMF()
1955 subj_masks.clear(); in s_BlastResults2SeqAlignDatabaseSearch_OMF()
1956 subj_masks.resize(results->num_queries); in s_BlastResults2SeqAlignDatabaseSearch_OMF()
1989 vector<TSeqLocInfoVector>& subj_masks, in LocalBlastResults2SeqAlign() argument
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H A Dbl2seq.cpp229 TSeqLocInfoVector subj_masks; in GetFilteredSubjectRegions() local
230 (*res)->GetSubjectMasks(subj_masks); in GetFilteredSubjectRegions()
231 retval.push_back(subj_masks); in GetFilteredSubjectRegions()
H A Dblast_results.cpp335 CSearchResults::GetSubjectMasks(TSeqLocInfoVector& subj_masks) const in GetSubjectMasks()
337 subj_masks = m_SubjectMasks; in GetSubjectMasks()
341 CSearchResults::SetSubjectMasks(const TSeqLocInfoVector& subj_masks) in SetSubjectMasks() argument
344 copy(subj_masks.begin(), subj_masks.end(), back_inserter(m_SubjectMasks)); in SetSubjectMasks()
H A Dtraceback_stage.cpp266 vector<TSeqLocInfoVector> subj_masks; in Run() local
274 subj_masks, in Run()
289 subj_masks, in Run()
H A Dblast_aux_priv.cpp311 const vector<TSeqLocInfoVector>& subj_masks, in BlastBuildSearchResultSet() argument
360 if (subj_masks.size() == retval->size()) { in BlastBuildSearchResultSet()
362 (*retval)[i].SetSubjectMasks(subj_masks[i]); in BlastBuildSearchResultSet()
H A Dblast_seqalign.hpp127 vector<TSeqLocInfoVector>& subj_masks,
H A Dblast_aux_priv.hpp168 const vector<TSeqLocInfoVector>& subj_masks,
/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/include/algo/blast/api/
H A Dblast_results.hpp245 void GetSubjectMasks(TSeqLocInfoVector& subj_masks) const;
250 void SetSubjectMasks(const TSeqLocInfoVector& subj_masks);
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/algo/blast/api/
H A Dblast_results.hpp245 void GetSubjectMasks(TSeqLocInfoVector& subj_masks) const;
250 void SetSubjectMasks(const TSeqLocInfoVector& subj_masks);
/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/algo/blast/format/
H A Dblast_format.cpp1556 TSeqLocInfoVector subj_masks; in PrintOneResultSet() local
1557 results.GetSubjectMasks(subj_masks); in PrintOneResultSet()
1558 display.SetSubjectMasks(subj_masks); in PrintOneResultSet()
1866 TSeqLocInfoVector subj_masks; in PrintOneResultSet() local
1867 results.GetSubjectMasks(subj_masks); in PrintOneResultSet()
1868 display.SetSubjectMasks(subj_masks); in PrintOneResultSet()
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/blast/format/
H A Dblast_format.cpp1556 TSeqLocInfoVector subj_masks; in PrintOneResultSet() local
1557 results.GetSubjectMasks(subj_masks); in PrintOneResultSet()
1558 display.SetSubjectMasks(subj_masks); in PrintOneResultSet()
1866 TSeqLocInfoVector subj_masks; in PrintOneResultSet() local
1867 results.GetSubjectMasks(subj_masks); in PrintOneResultSet()
1868 display.SetSubjectMasks(subj_masks); in PrintOneResultSet()