/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/blast/api/ |
H A D | blast_seqalign.cpp | 1552 TSeqLocInfoVector & subj_masks) in BlastHitList2SeqAlign_OMF() argument 1596 subj_masks.push_back(masks); in BlastHitList2SeqAlign_OMF() 1661 subj_masks.clear(); in PhiBlastResults2SeqAlign_OMF() 1662 subj_masks.resize(pattern_info->num_patterns); in PhiBlastResults2SeqAlign_OMF() 1825 subj_masks[qindex].push_back(masks); in s_BLAST_OneSubjectResults2CSeqAlign() 1913 subj_masks.clear(); in s_BlastResults2SeqAlignSequenceCmp_OMF() 1914 subj_masks.resize(num_of_queries *seqinfo_size); in s_BlastResults2SeqAlignSequenceCmp_OMF() 1955 subj_masks.clear(); in s_BlastResults2SeqAlignDatabaseSearch_OMF() 1956 subj_masks.resize(results->num_queries); in s_BlastResults2SeqAlignDatabaseSearch_OMF() 1989 vector<TSeqLocInfoVector>& subj_masks, in LocalBlastResults2SeqAlign() argument [all …]
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H A D | bl2seq.cpp | 229 TSeqLocInfoVector subj_masks; in GetFilteredSubjectRegions() local 230 (*res)->GetSubjectMasks(subj_masks); in GetFilteredSubjectRegions() 231 retval.push_back(subj_masks); in GetFilteredSubjectRegions()
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H A D | blast_results.cpp | 335 CSearchResults::GetSubjectMasks(TSeqLocInfoVector& subj_masks) const in GetSubjectMasks() 337 subj_masks = m_SubjectMasks; in GetSubjectMasks() 341 CSearchResults::SetSubjectMasks(const TSeqLocInfoVector& subj_masks) in SetSubjectMasks() argument 344 copy(subj_masks.begin(), subj_masks.end(), back_inserter(m_SubjectMasks)); in SetSubjectMasks()
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H A D | traceback_stage.cpp | 266 vector<TSeqLocInfoVector> subj_masks; in Run() local 274 subj_masks, in Run() 289 subj_masks, in Run()
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H A D | blast_aux_priv.cpp | 311 const vector<TSeqLocInfoVector>& subj_masks, in BlastBuildSearchResultSet() argument 360 if (subj_masks.size() == retval->size()) { in BlastBuildSearchResultSet() 362 (*retval)[i].SetSubjectMasks(subj_masks[i]); in BlastBuildSearchResultSet()
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H A D | blast_seqalign.hpp | 127 vector<TSeqLocInfoVector>& subj_masks,
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H A D | blast_aux_priv.hpp | 168 const vector<TSeqLocInfoVector>& subj_masks,
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/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/algo/blast/api/ |
H A D | blast_seqalign.cpp | 1552 TSeqLocInfoVector & subj_masks) in BlastHitList2SeqAlign_OMF() argument 1596 subj_masks.push_back(masks); in BlastHitList2SeqAlign_OMF() 1661 subj_masks.clear(); in PhiBlastResults2SeqAlign_OMF() 1662 subj_masks.resize(pattern_info->num_patterns); in PhiBlastResults2SeqAlign_OMF() 1825 subj_masks[qindex].push_back(masks); in s_BLAST_OneSubjectResults2CSeqAlign() 1913 subj_masks.clear(); in s_BlastResults2SeqAlignSequenceCmp_OMF() 1914 subj_masks.resize(num_of_queries *seqinfo_size); in s_BlastResults2SeqAlignSequenceCmp_OMF() 1955 subj_masks.clear(); in s_BlastResults2SeqAlignDatabaseSearch_OMF() 1956 subj_masks.resize(results->num_queries); in s_BlastResults2SeqAlignDatabaseSearch_OMF() 1989 vector<TSeqLocInfoVector>& subj_masks, in LocalBlastResults2SeqAlign() argument [all …]
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H A D | bl2seq.cpp | 229 TSeqLocInfoVector subj_masks; in GetFilteredSubjectRegions() local 230 (*res)->GetSubjectMasks(subj_masks); in GetFilteredSubjectRegions() 231 retval.push_back(subj_masks); in GetFilteredSubjectRegions()
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H A D | blast_results.cpp | 335 CSearchResults::GetSubjectMasks(TSeqLocInfoVector& subj_masks) const in GetSubjectMasks() 337 subj_masks = m_SubjectMasks; in GetSubjectMasks() 341 CSearchResults::SetSubjectMasks(const TSeqLocInfoVector& subj_masks) in SetSubjectMasks() argument 344 copy(subj_masks.begin(), subj_masks.end(), back_inserter(m_SubjectMasks)); in SetSubjectMasks()
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H A D | traceback_stage.cpp | 266 vector<TSeqLocInfoVector> subj_masks; in Run() local 274 subj_masks, in Run() 289 subj_masks, in Run()
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H A D | blast_aux_priv.cpp | 311 const vector<TSeqLocInfoVector>& subj_masks, in BlastBuildSearchResultSet() argument 360 if (subj_masks.size() == retval->size()) { in BlastBuildSearchResultSet() 362 (*retval)[i].SetSubjectMasks(subj_masks[i]); in BlastBuildSearchResultSet()
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H A D | blast_seqalign.hpp | 127 vector<TSeqLocInfoVector>& subj_masks,
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H A D | blast_aux_priv.hpp | 168 const vector<TSeqLocInfoVector>& subj_masks,
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/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/include/algo/blast/api/ |
H A D | blast_results.hpp | 245 void GetSubjectMasks(TSeqLocInfoVector& subj_masks) const; 250 void SetSubjectMasks(const TSeqLocInfoVector& subj_masks);
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/algo/blast/api/ |
H A D | blast_results.hpp | 245 void GetSubjectMasks(TSeqLocInfoVector& subj_masks) const; 250 void SetSubjectMasks(const TSeqLocInfoVector& subj_masks);
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/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/algo/blast/format/ |
H A D | blast_format.cpp | 1556 TSeqLocInfoVector subj_masks; in PrintOneResultSet() local 1557 results.GetSubjectMasks(subj_masks); in PrintOneResultSet() 1558 display.SetSubjectMasks(subj_masks); in PrintOneResultSet() 1866 TSeqLocInfoVector subj_masks; in PrintOneResultSet() local 1867 results.GetSubjectMasks(subj_masks); in PrintOneResultSet() 1868 display.SetSubjectMasks(subj_masks); in PrintOneResultSet()
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/blast/format/ |
H A D | blast_format.cpp | 1556 TSeqLocInfoVector subj_masks; in PrintOneResultSet() local 1557 results.GetSubjectMasks(subj_masks); in PrintOneResultSet() 1558 display.SetSubjectMasks(subj_masks); in PrintOneResultSet() 1866 TSeqLocInfoVector subj_masks; in PrintOneResultSet() local 1867 results.GetSubjectMasks(subj_masks); in PrintOneResultSet() 1868 display.SetSubjectMasks(subj_masks); in PrintOneResultSet()
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