Searched refs:subtree_clen (Results 1 – 1 of 1) sorted by relevance
72 int subtree_clen; /* consensus length of subtree under this node */ in cm_tr_penalties_Create() local344 subtree_clen = rpos - lpos + 1; in cm_tr_penalties_Create()345 nfrag5 = subtree_clen; in cm_tr_penalties_Create()346 nfrag3 = subtree_clen; in cm_tr_penalties_Create()347 nfrag53 = (subtree_clen * (subtree_clen+1)) / 2; in cm_tr_penalties_Create()667 int v, nd, subtree_clen; in cm_tr_penalties_Dump() local681 subtree_clen = cm->emap->rpos[nd]-cm->emap->lpos[nd]+1; in cm_tr_penalties_Dump()682 …if(cm->ndtype[nd] != MATP_nd && cm->ndtype[nd] != MATL_nd) subtree_clen--; /* lpos was one less th… in cm_tr_penalties_Dump()684 fprintf(fp, "%5d %5d %-7s %7d", v, cm->ndidx[v], CMStateid(cm->stid[v]), subtree_clen); in cm_tr_penalties_Dump()712 subtree_clen = cm->emap->rpos[nd]-cm->emap->lpos[nd]+1; in cm_tr_penalties_Dump()[all …]