Searched refs:sufflookback (Results 1 – 4 of 4) sorted by relevance
/dports/biology/gmap/gmap-2020-09-12/src/ |
H A D | stage2.c | 121 static int sufflookback; variable 145 sufflookback = sufflookback_in; in Stage2_setup() 1120 lookback = sufflookback; in score_querypos_lookback_one() 1158 lookback = sufflookback/2; in score_querypos_lookback_one() 1663 if (nseen <= /*nlookback*/1 || querydistance - indexsize_nt <= /*lookback*/sufflookback/2) { in score_querypos_lookback_mult() 1666 …(nseen <= /*nlookback*/nsufflookback || querydistance - indexsize_nt <= /*lookback*/sufflookback) { in score_querypos_lookback_mult() 2055 lookback = sufflookback; in score_querypos_lookforward_one() 2092 lookback = sufflookback/2; in score_querypos_lookforward_one() 2587 if (nseen <= /*nlookback*/1 || querydistance - indexsize_nt <= /*lookback*/sufflookback/2) { in score_querypos_lookforward_mult() 2590 …(nseen <= /*nlookback*/nsufflookback || querydistance - indexsize_nt <= /*lookback*/sufflookback) { in score_querypos_lookforward_mult()
|
H A D | gsnap.c | 174 static int sufflookback = 60;
|
H A D | gmap.c | 274 static int sufflookback = 60; variable 7013 suboptimal_score_start,suboptimal_score_end,sufflookback,nsufflookback,maxintronlen,mode, in main()
|
/dports/biology/gmap/gmap-2020-09-12/ |
H A D | ChangeLog | 22328 instead of gendistance. Making sufflookback depend on mapfraction. 27377 * snap.c, gmap.c: Added parameter for sufflookback, potentially different 27378 from maxlookback, but found that setting maxlookback >> sufflookback led 27379 to long, poor alignments, so set maxlookback = sufflookback. 27382 sufflookback, to be used in stage 2, and possibly different from
|