Searched refs:top_hit (Results 1 – 5 of 5) sorted by relevance
| /dports/biology/diamond/diamond-2.0.13/src/align/legacy/ |
| H A D | banded_swipe_pipeline.cpp | 41 top_hit = hits[0]; in ungapped_stage()
43 if (i->ungapped.score > top_hit.ungapped.score) in ungapped_stage()
44 top_hit = *i; in ungapped_stage()
45 filter_score = top_hit.ungapped.score; in ungapped_stage()
50 const Frame f = Frame(top_hit.frame_); in ungapped_query_range()
51 const int i0 = std::max((int)top_hit.query_pos_ - (int)top_hit.subject_pos_, 0), in ungapped_query_range()
52 …i1 = std::min((int)top_hit.query_pos_ + (int)subject.length() - (int)top_hit.subject_pos_, f.lengt… in ungapped_query_range()
79 Strand strand = top_hit.strand(); in add()
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| H A D | query_mapper.h | 150 Seed_hit top_hit; member
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| /dports/textproc/p5-KinoSearch1/KinoSearch1-1.01/t/ |
| H A D | 302-many_fields.t | 41 my $top_hit = $hits->fetch_hit_hashref;
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| /dports/biology/stacks/stacks-2.4/src/ |
| H A D | sstacks.cc | 803 uint hit_cnt, index, prev_id, allele_id, hits_size, stop, top_hit; in search_for_gaps() local
906 top_hit = ordered_hits[0].second; in search_for_gaps()
909 if ((uint) ordered_hits[j].second < top_hit) { in search_for_gaps()
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| H A D | cstacks.cc | 802 uint hit_cnt, index, prev_id, allele_id, hits_size, stop, top_hit; in search_for_gaps() local
895 top_hit = ordered_hits[0].second; in search_for_gaps()
898 if ((uint) ordered_hits[j].second < top_hit) { in search_for_gaps()
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