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Searched refs:tophits (Results 1 – 14 of 14) sorted by relevance

/dports/biology/fasttree/FastTree-2.1.10_5/
H A DFastTree-2.1.10.c3023 tophits = FreeTopHits(tophits); in FastNJ()
7632 …tophits->top_hits_lists = myfree(tophits->top_hits_lists, sizeof(top_hits_list_t) * tophits->maxno… in FreeTopHits()
7633 tophits->visible = myfree(tophits->visible, sizeof(hit_t*) * tophits->maxnodes); in FreeTopHits()
7634 tophits->topvisible = myfree(tophits->topvisible, sizeof(int) * tophits->nTopVisible); in FreeTopHits()
7638 tophits->locks = myfree(tophits->locks, sizeof(omp_lock_t) * tophits->maxnodes); in FreeTopHits()
7649 if (!useTopHits2nd || tophits->q >= tophits->m) in InitTopHits()
7753 /*OUT-SIZE*/tophits->m, /*IN/OUT*/tophits); in SetAllLeafTopHits()
7817 /*IN-SIZE*/2 * tophits->m, /*OUT-SIZE*/tophits->m, in SetAllLeafTopHits()
7870 int nCheck = tophits->q > 0 ? tophits->q : (int)(0.5 + 2.0*sqrt(tophits->m)); in SetAllLeafTopHits()
8239 /*nOut*/tophits->m, /*IN/OUT*/tophits); in TopHitJoin()
[all …]
/dports/biology/vsearch/vsearch-2.17.1/src/
H A Dsearch.cc68 static int tophits; /* the maximum number of hits to keep */ variable
428 si->m = minheap_init(tophits); in search_thread_init()
430 (sizeof(struct hit) * (tophits) * opt_strand); in search_thread_init()
673 tophits = opt_maxrejects + opt_maxaccepts + MAXDELAYED; in search_prep()
675 if (tophits > seqcount) { in search_prep()
676 tophits = seqcount; in search_prep()
H A Dsintax.cc83 static int tophits; /* the maximum number of hits to keep */ variable
517 si->m = minheap_init(tophits); in sintax_thread_init()
588 tophits = 1; in sintax()
H A Dcluster.cc63 static int tophits; /* the maximum number of hits to keep */ variable
305 si->hits = (struct hit *) xmalloc(sizeof(struct hit) * tophits); in cluster_query_init()
308 si->m = minheap_init(tophits); in cluster_query_init()
1251 tophits = opt_maxrejects + opt_maxaccepts + MAXDELAYED; in cluster()
1253 if (tophits > seqcount) { in cluster()
1254 tophits = seqcount; in cluster()
H A Dsearchexact.cc68 static int tophits; /* the maximum number of hits to keep */ variable
500 (sizeof(struct hit) * (tophits) * opt_strand); in search_exact_thread_init()
704 tophits = seqcount; in search_exact_prep()
H A Dchimera.cc79 static int tophits; variable
1103 si->hits = (struct hit *) xmalloc(sizeof(struct hit) * tophits); in query_init()
1123 si->m = minheap_init(tophits); in query_init()
1704 tophits = opt_maxaccepts + opt_maxrejects; in chimera()
/dports/www/moinmoin/moin-1.9.11/MoinMoin/support/xappy/
H A Dsearchconnection.py301 tophits = []
307 tophits.append(i)
310 self._mset_order = tophits
364 tophits = []
377 if len(tophits) == 0:
378 tophits.append(hit)
383 for tophit in tophits[-1:]:
391 tophits.append(hit)
397 if len(tophits) >= count:
398 for hit in tophits:
[all …]
/dports/biology/wise/wise2.4.1/src/HMMer2/
H A DMakefile48 plan9.c prior.c tophits.c trace.c
60 plan9.o prior.o tophits.o trace.o\
/dports/biology/ugene/ugene-40.1/src/plugins_3rdparty/hmm2/
H A Dhmm2.pro51 src/hmmer2/tophits.cpp \
/dports/biology/bbmap/bbmap/pytools/lib/
H A Dreadqc_report.py87 …tophits, _, exitCode = run_sh_command("grep -v '^#' %s 2>/dev/null | wc -l " % (tophitFile), True,…
89 t = tophits.split()
/dports/security/dirbuster/DirBuster-1.0-RC1/
H A Ddirectories.jbrofuzz52675 tophits
/dports/editors/texstudio/texstudio-4.1.2/utilities/dictionaries/
H A Dda_DA-Danish.dic136900 tophits/10,47,39
136901 tophits'/10,47,39
H A Dfy_FY-WesternFrisian.dic254887 tophits
/dports/games/tanglet/tanglet-1.6.0/wordlists/
H A Dnl253438 tophits