|
Name |
|
Date |
Size |
#Lines |
LOC |
| .. | | 03-May-2022 | - |
| Makefile.am | H A D | 03-May-2022 | 2.6 KiB | 164 | 150 |
| align.cc | H A D | 14-Jun-2021 | 11.6 KiB | 473 | 315 |
| align.h | H A D | 14-Jun-2021 | 3.4 KiB | 93 | 29 |
| align_simd.cc | H A D | 14-Jun-2021 | 51.6 KiB | 1,680 | 1,295 |
| align_simd.h | H A D | 14-Jun-2021 | 3.6 KiB | 98 | 33 |
| allpairs.cc | H A D | 14-Jun-2021 | 20.7 KiB | 756 | 523 |
| allpairs.h | H A D | 14-Jun-2021 | 2.5 KiB | 62 | 1 |
| arch.cc | H A D | 14-Jun-2021 | 7.5 KiB | 341 | 237 |
| arch.h | H A D | 14-Jun-2021 | 3.2 KiB | 92 | 26 |
| attributes.cc | H A D | 14-Jun-2021 | 7.4 KiB | 268 | 158 |
| attributes.h | H A D | 14-Jun-2021 | 2.8 KiB | 72 | 9 |
| bitmap.cc | H A D | 14-Jun-2021 | 2.7 KiB | 79 | 15 |
| bitmap.h | H A D | 14-Jun-2021 | 3.2 KiB | 100 | 31 |
| chimera.cc | H A D | 14-Jun-2021 | 49.4 KiB | 1,889 | 1,398 |
| chimera.h | H A D | 14-Jun-2021 | 2.4 KiB | 62 | 1 |
| city.cc | H A D | 03-May-2022 | 18.6 KiB | 635 | 513 |
| city.h | H A D | 14-Jun-2021 | 4.8 KiB | 113 | 28 |
| citycrc.h | H A D | 14-Jun-2021 | 1.8 KiB | 44 | 7 |
| cluster.cc | H A D | 14-Jun-2021 | 46.5 KiB | 1,680 | 1,208 |
| cluster.h | H A D | 14-Jun-2021 | 2.6 KiB | 65 | 4 |
| cpu.cc | H A D | 14-Jun-2021 | 7.2 KiB | 230 | 112 |
| cpu.h | H A D | 14-Jun-2021 | 3 KiB | 73 | 12 |
| cut.cc | H A D | 14-Jun-2021 | 11.7 KiB | 433 | 295 |
| cut.h | H A D | 14-Jun-2021 | 2.4 KiB | 62 | 1 |
| db.cc | H A D | 14-Jun-2021 | 13.7 KiB | 564 | 437 |
| db.h | H A D | 14-Jun-2021 | 3.8 KiB | 127 | 50 |
| dbhash.cc | H A D | 14-Jun-2021 | 6.2 KiB | 222 | 130 |
| dbhash.h | H A D | 14-Jun-2021 | 3 KiB | 87 | 22 |
| dbindex.cc | H A D | 14-Jun-2021 | 6.7 KiB | 233 | 132 |
| dbindex.h | H A D | 14-Jun-2021 | 3.6 KiB | 107 | 39 |
| derep.cc | H A D | 14-Jun-2021 | 30.4 KiB | 1,207 | 848 |
| derep.h | H A D | 14-Jun-2021 | 2.5 KiB | 64 | 3 |
| dynlibs.cc | H A D | 14-Jun-2021 | 4.7 KiB | 172 | 101 |
| dynlibs.h | H A D | 14-Jun-2021 | 3.1 KiB | 89 | 26 |
| eestats.cc | H A D | 14-Jun-2021 | 16.3 KiB | 623 | 397 |
| eestats.h | H A D | 14-Jun-2021 | 2.5 KiB | 63 | 2 |
| fasta.cc | H A D | 14-Jun-2021 | 11.7 KiB | 460 | 291 |
| fasta.h | H A D | 14-Jun-2021 | 4 KiB | 108 | 38 |
| fastq.cc | H A D | 14-Jun-2021 | 14.4 KiB | 571 | 369 |
| fastq.h | H A D | 14-Jun-2021 | 3.6 KiB | 91 | 28 |
| fastqjoin.cc | H A D | 14-Jun-2021 | 7 KiB | 276 | 147 |
| fastqjoin.h | H A D | 14-Jun-2021 | 2.4 KiB | 62 | 1 |
| fastqops.cc | H A D | 14-Jun-2021 | 26.2 KiB | 947 | 687 |
| fastqops.h | H A D | 14-Jun-2021 | 2.5 KiB | 65 | 4 |
| fastx.cc | H A D | 14-Jun-2021 | 17.2 KiB | 747 | 509 |
| fastx.h | H A D | 14-Jun-2021 | 4.2 KiB | 137 | 58 |
| filter.cc | H A D | 14-Jun-2021 | 18.8 KiB | 659 | 469 |
| filter.h | H A D | 14-Jun-2021 | 2.5 KiB | 63 | 2 |
| getseq.cc | H A D | 14-Jun-2021 | 15.1 KiB | 610 | 433 |
| getseq.h | H A D | 14-Jun-2021 | 2.5 KiB | 64 | 3 |
| kmerhash.cc | H A D | 14-Jun-2021 | 7.3 KiB | 298 | 182 |
| kmerhash.h | H A D | 14-Jun-2021 | 2.8 KiB | 75 | 10 |
| linmemalign.cc | H A D | 14-Jun-2021 | 18.7 KiB | 778 | 501 |
| linmemalign.h | H A D | 14-Jun-2021 | 5.1 KiB | 164 | 79 |
| maps.cc | H A D | 14-Jun-2021 | 21.8 KiB | 553 | 270 |
| maps.h | H A D | 14-Jun-2021 | 3.1 KiB | 79 | 16 |
| mask.cc | H A D | 14-Jun-2021 | 10.3 KiB | 441 | 294 |
| mask.h | H A D | 14-Jun-2021 | 2.6 KiB | 73 | 10 |
| md5.c | H A D | 14-Jun-2021 | 10.1 KiB | 298 | 195 |
| md5.h | H A D | 14-Jun-2021 | 1.5 KiB | 54 | 19 |
| mergepairs.cc | H A D | 14-Jun-2021 | 39.6 KiB | 1,669 | 1,210 |
| mergepairs.h | H A D | 14-Jun-2021 | 2.4 KiB | 62 | 1 |
| minheap.cc | H A D | 14-Jun-2021 | 7.1 KiB | 308 | 181 |
| minheap.h | H A D | 14-Jun-2021 | 3 KiB | 94 | 27 |
| msa.cc | H A D | 14-Jun-2021 | 11.2 KiB | 417 | 285 |
| msa.h | H A D | 14-Jun-2021 | 2.7 KiB | 72 | 10 |
| orient.cc | H A D | 14-Jun-2021 | 13.4 KiB | 497 | 319 |
| orient.h | H A D | 14-Jun-2021 | 2.4 KiB | 62 | 1 |
| otutable.cc | H A D | 14-Jun-2021 | 12.9 KiB | 462 | 318 |
| otutable.h | H A D | 14-Jun-2021 | 2.7 KiB | 67 | 6 |
| rerep.cc | H A D | 14-Jun-2021 | 4.3 KiB | 141 | 63 |
| rerep.h | H A D | 14-Jun-2021 | 2.4 KiB | 62 | 1 |
| results.cc | H A D | 14-Jun-2021 | 22.8 KiB | 801 | 567 |
| results.h | H A D | 14-Jun-2021 | 4.2 KiB | 109 | 42 |
| search.cc | H A D | 14-Jun-2021 | 23.4 KiB | 913 | 654 |
| search.h | H A D | 14-Jun-2021 | 2.5 KiB | 62 | 1 |
| searchcore.cc | H A D | 14-Jun-2021 | 22.5 KiB | 854 | 600 |
| searchcore.h | H A D | 14-Jun-2021 | 6.4 KiB | 169 | 77 |
| searchexact.cc | H A D | 14-Jun-2021 | 22.7 KiB | 897 | 639 |
| searchexact.h | H A D | 14-Jun-2021 | 2.5 KiB | 62 | 1 |
| sffconvert.cc | H A D | 14-Jun-2021 | 16.3 KiB | 529 | 338 |
| sffconvert.h | H A D | 14-Jun-2021 | 2.4 KiB | 62 | 1 |
| sha1.c | H A D | 14-Jun-2021 | 11.6 KiB | 382 | 239 |
| sha1.h | H A D | 14-Jun-2021 | 548 | 28 | 18 |
| showalign.cc | H A D | 14-Jun-2021 | 7.6 KiB | 321 | 211 |
| showalign.h | H A D | 14-Jun-2021 | 3 KiB | 80 | 17 |
| shuffle.cc | H A D | 14-Jun-2021 | 3.5 KiB | 116 | 40 |
| shuffle.h | H A D | 14-Jun-2021 | 2.4 KiB | 62 | 1 |
| sintax.cc | H A D | 14-Jun-2021 | 17.6 KiB | 695 | 444 |
| sintax.h | H A D | 14-Jun-2021 | 2.4 KiB | 63 | 1 |
| sortbylength.cc | H A D | 14-Jun-2021 | 4.9 KiB | 177 | 93 |
| sortbylength.h | H A D | 14-Jun-2021 | 2.4 KiB | 62 | 1 |
| sortbysize.cc | H A D | 14-Jun-2021 | 4.8 KiB | 180 | 90 |
| sortbysize.h | H A D | 14-Jun-2021 | 2.4 KiB | 62 | 1 |
| subsample.cc | H A D | 14-Jun-2021 | 8.3 KiB | 302 | 181 |
| subsample.h | H A D | 14-Jun-2021 | 2.4 KiB | 62 | 1 |
| udb.cc | H A D | 14-Jun-2021 | 25.2 KiB | 996 | 654 |
| udb.h | H A D | 14-Jun-2021 | 2.6 KiB | 69 | 8 |
| unique.cc | H A D | 14-Jun-2021 | 8.8 KiB | 372 | 236 |
| unique.h | H A D | 14-Jun-2021 | 2.9 KiB | 80 | 15 |
| userfields.cc | H A D | 14-Jun-2021 | 4.2 KiB | 178 | 91 |
| userfields.h | H A D | 14-Jun-2021 | 2.5 KiB | 65 | 3 |
| util.cc | H A D | 14-Jun-2021 | 10.3 KiB | 425 | 269 |
| util.h | H A D | 14-Jun-2021 | 6.1 KiB | 214 | 124 |
| vsearch.cc | H A D | 14-Jun-2021 | 158.2 KiB | 5,479 | 4,723 |
| vsearch.h | H A D | 03-May-2022 | 13.5 KiB | 518 | 412 |
| xstring.h | H A D | 14-Jun-2021 | 3.8 KiB | 148 | 76 |