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/dports/misc/vxl/vxl-3.3.2/contrib/mul/mcal/
H A Dmcal_extract_mode.cxx118 double total_var=0; in mcal_extract_modes() local
120 total_var += dv[i].squared_magnitude(); in mcal_extract_modes()
122 total_var/=ns; in mcal_extract_modes()
123 double var_thresh = var_prop*total_var; in mcal_extract_modes()
H A Dmcal_pca.cxx71 double total_var=0.0; in choose_n_modes() local
72 for (i=0;i<n;++i) total_var += v_data[i]; in choose_n_modes()
73 if (total_var==0.0) return 0; in choose_n_modes()
75 double target_var = total_var * var_prop_; in choose_n_modes()
/dports/science/py-scikit-learn/scikit-learn-1.0.2/sklearn/decomposition/
H A D_pca.py500 total_var = explained_variance_.sum()
501 explained_variance_ratio_ = explained_variance_ / total_var
594 total_var = np.var(X, ddof=1, axis=0)
595 self.explained_variance_ratio_ = self.explained_variance_ / total_var.sum()
599 self.noise_variance_ = total_var.sum() - self.explained_variance_.sum()
/dports/biology/py-crossmap/CrossMap-0.5.4/lib/cmmodule/
H A Dmapgvcf.py61 total_var = 0
178 total_var += 1
227 logging.info ("Total variants: %d" % total_var)
/dports/misc/vxl/vxl-3.3.2/contrib/brl/bseg/brec/tests/
H A Dtest_brec_part_hierarchy_learner.cxx112 float total_var = xsq_sum/p_sum; //estimate of total variance in test_brec_part_hierarchy_learner() local
113 float var = total_var - mean*mean; in test_brec_part_hierarchy_learner()
/dports/math/py-statsmodels/statsmodels-0.13.1/statsmodels/multivariate/
H A Dplots.py5 def plot_scree(eigenvals, total_var, ncomp=None, x_label='factor'): argument
50 per_variance = vals / total_var
/dports/math/R-cran-recipes/recipes/R/
H A Dpca.R164 total_var <- sum(prc_obj$sdev ^ 2) functionVar
166 which.max(cumsum(prc_obj$sdev ^ 2 / total_var) >= x$threshold)
/dports/misc/orange3/orange3-3.29.1/Orange/projection/
H A Dpca.py180 total_var = ut.var(X, axis=0, ddof=1)
210 self.explained_variance_ratio_ = self.explained_variance_ / total_var.sum()
214 self.noise_variance_ = (total_var.sum() - self.explained_variance_.sum())
/dports/devel/pecl-swoole/swoole-4.8.5/tests/include/
H A Dfunctions.php786 $total_var = 0;
788 $total_var += pow(($lv - $avg), 2);
793 … return $is_swatch ? sqrt($total_var / (count($array) - 1)) : sqrt($total_var / count($array));
/dports/multimedia/vmaf/vmaf-2.3.0/python/vmaf/tools/
H A Dstats.py100 total_var=ListStats.total_variation(my_list)))
/dports/misc/vxl/vxl-3.3.2/contrib/brl/bseg/brec/
H A Dbrec_part_gaussian.cxx454 double total_var = xsq_sum/p_sum; // estimate of total variance in construct_class_response_models() local
455 double var = total_var - mean*mean; in construct_class_response_models()
470 total_var = xsq_sum_non_class/p_sum_non_class; // estimate of total variance in construct_class_response_models()
471 var = total_var - mean*mean; in construct_class_response_models()
/dports/finance/frontaccounting/frontaccounting/includes/db/
H A Dsql_functions.inc77 (SELECT @total:=0) total_var";
/dports/science/py-GPy/GPy-1.10.0/GPy/examples/
H A Dregression.py198 total_var = np.var(data['Y'])
203 noise_var = total_var / (1. + SNR)
204 signal_var = total_var - noise_var
/dports/devel/tinygo/tinygo-0.14.1/llvm-project/polly/lib/External/isl/
H A Disl_map_simplify.c550 unsigned total_var; in isl_basic_map_gauss() local
559 total_var = total - bmap->n_div; in isl_basic_map_gauss()
580 if (last_var >= total_var) in isl_basic_map_gauss()
581 bmap = set_div_from_eq(bmap, last_var - total_var, in isl_basic_map_gauss()
753 unsigned total_var; in remove_duplicate_divs() local
761 total_var = isl_space_dim(bmap->dim, isl_dim_all); in remove_duplicate_divs()
762 total = total_var + bmap->n_div; in remove_duplicate_divs()
807 isl_int_set_si(eq.data[1+total_var+k], -1); in remove_duplicate_divs()
808 isl_int_set_si(eq.data[1+total_var+l], 1); in remove_duplicate_divs()
812 isl_int_set_si(eq.data[1+total_var+k], 0); in remove_duplicate_divs()
[all …]
/dports/science/py-scikit-learn/scikit-learn-1.0.2/sklearn/
H A Dnaive_bayes.py321 total_var = total_ssd / n_total
323 return total_mu, total_var
/dports/misc/vxl/vxl-3.3.2/contrib/mul/msm/tools/
H A Dmsm_compare_markups.cxx349 double total_var() const { return var11()+var22(); } in total_var() function in mbm_covar_stats_2d
717 ofs1<<params.image_names[i]<<" "<<per_image_stats[i].total_var()<<std::endl; in main()
/dports/biology/cufflinks/cufflinks-2.2.1-89-gdc3b0cb/src/
H A Dabundances.cpp2174 double total_var = accumulate(frag_variances.begin(), frag_variances.end(), 0.0); in simulate_count_covariance() local
2291 double fit_var = total_var * (random_count_assign(j) / total_frag_counts); in simulate_count_covariance()
2539 long double total_var = 0.0; in calculate_FPKM_covariance() local
2611 total_var += _fpkm_covariance(i,j); in calculate_FPKM_covariance()
2617 _FPKM_variance = total_var; in calculate_FPKM_covariance()
3280 double total_var = 0.0; in calculate_iterated_exp_count_covariance() local
3312 total_var += var; in calculate_iterated_exp_count_covariance()
/dports/devel/llvm-cheri/llvm-project-37c49ff00e3eadce5d8703fdc4497f28458c64a8/polly/lib/External/isl/
H A Disl_map_simplify.c604 unsigned total_var; in isl_basic_map_gauss5() local
615 total_var = total - bmap->n_div; in isl_basic_map_gauss5()
639 if (last_var >= total_var) in isl_basic_map_gauss5()
640 bmap = set_div_from_eq(bmap, last_var - total_var, in isl_basic_map_gauss5()
/dports/devel/isl/isl-0.24/
H A Disl_map_simplify.c604 unsigned total_var; in isl_basic_map_gauss5() local
615 total_var = total - bmap->n_div; in isl_basic_map_gauss5()
639 if (last_var >= total_var) in isl_basic_map_gauss5()
640 bmap = set_div_from_eq(bmap, last_var - total_var, in isl_basic_map_gauss5()
/dports/math/barvinok/barvinok-0.41.5/isl/
H A Disl_map_simplify.c604 unsigned total_var; in isl_basic_map_gauss5() local
615 total_var = total - bmap->n_div; in isl_basic_map_gauss5()
639 if (last_var >= total_var) in isl_basic_map_gauss5()
640 bmap = set_div_from_eq(bmap, last_var - total_var, in isl_basic_map_gauss5()
/dports/devel/llvm-devel/llvm-project-f05c95f10fc1d8171071735af8ad3a9e87633120/polly/lib/External/isl/
H A Disl_map_simplify.c604 unsigned total_var; in isl_basic_map_gauss5() local
615 total_var = total - bmap->n_div; in isl_basic_map_gauss5()
639 if (last_var >= total_var) in isl_basic_map_gauss5()
640 bmap = set_div_from_eq(bmap, last_var - total_var, in isl_basic_map_gauss5()
/dports/devel/llvm12/llvm-project-12.0.1.src/polly/lib/External/isl/
H A Disl_map_simplify.c604 unsigned total_var; in isl_basic_map_gauss5() local
615 total_var = total - bmap->n_div; in isl_basic_map_gauss5()
639 if (last_var >= total_var) in isl_basic_map_gauss5()
640 bmap = set_div_from_eq(bmap, last_var - total_var, in isl_basic_map_gauss5()
/dports/devel/wasi-compiler-rt12/llvm-project-12.0.1.src/polly/lib/External/isl/
H A Disl_map_simplify.c604 unsigned total_var; in isl_basic_map_gauss5() local
615 total_var = total - bmap->n_div; in isl_basic_map_gauss5()
639 if (last_var >= total_var) in isl_basic_map_gauss5()
640 bmap = set_div_from_eq(bmap, last_var - total_var, in isl_basic_map_gauss5()
/dports/devel/wasi-compiler-rt13/llvm-project-13.0.1.src/polly/lib/External/isl/
H A Disl_map_simplify.c604 unsigned total_var; in isl_basic_map_gauss5() local
615 total_var = total - bmap->n_div; in isl_basic_map_gauss5()
639 if (last_var >= total_var) in isl_basic_map_gauss5()
640 bmap = set_div_from_eq(bmap, last_var - total_var, in isl_basic_map_gauss5()
/dports/www/chromium-legacy/chromium-88.0.4324.182/third_party/llvm/polly/lib/External/isl/
H A Disl_map_simplify.c604 unsigned total_var; in isl_basic_map_gauss5() local
615 total_var = total - bmap->n_div; in isl_basic_map_gauss5()
639 if (last_var >= total_var) in isl_basic_map_gauss5()
640 bmap = set_div_from_eq(bmap, last_var - total_var, in isl_basic_map_gauss5()

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