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Searched refs:trieoffsets_obs (Results 1 – 5 of 5) sorted by relevance

/dports/biology/gmap/gmap-2020-09-12/src/
H A Dsplicetrie_build.c2419 *trieoffsets_obs = (Trieoffset_T *) CALLOC(nsplicesites,sizeof(Trieoffset_T)); in Splicetrie_build_via_splicesites()
2421 *trieoffsets_obs = (Trieoffset_T *) NULL; in Splicetrie_build_via_splicesites()
2909 (*trieoffsets_obs)[j] = NULL_POINTER; in build_via_introns_size()
2964 (*trieoffsets_obs)[j] = NULL_POINTER; in build_via_introns_size()
3019 (*trieoffsets_obs)[j] = NULL_POINTER; in build_via_introns_size()
3074 (*trieoffsets_obs)[j] = NULL_POINTER; in build_via_introns_size()
3145 *trieoffsets_obs = (Trieoffset_T *) CALLOC(nsplicesites,sizeof(Trieoffset_T)); in Splicetrie_build_via_introns()
3183 (*trieoffsets_obs)[j] = NULL_POINTER; in Splicetrie_build_via_introns()
3237 (*trieoffsets_obs)[j] = NULL_POINTER; in Splicetrie_build_via_introns()
3291 (*trieoffsets_obs)[j] = NULL_POINTER; in Splicetrie_build_via_introns()
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H A Dsplicetrie_build.h63 Splicetrie_build_via_splicesites (Triecontent_T **triecontents_obs, Trieoffset_T **trieoffsets_obs,
69 Splicetrie_build_via_introns (Triecontent_T **triecontents_obs, Trieoffset_T **trieoffsets_obs,
H A Dsplicetrie.c61 static Trieoffset_T *trieoffsets_obs; variable
82 trieoffsets_obs = trieoffsets_obs_in; in Splicetrie_setup()
H A Ddynprog_end.c107 static Trieoffset_T *trieoffsets_obs; variable
124 trieoffsets_obs = trieoffsets_obs_in; in Dynprog_end_setup()
2852 if (trieoffsets_obs != NULL) { in Dynprog_end5_known()
2854 best_pairs = Splicetrie_solve_end5(best_pairs,triecontents_obs,trieoffsets_obs,j, in Dynprog_end5_known()
3112 if (trieoffsets_obs != NULL) { in Dynprog_end3_known()
3114 best_pairs = Splicetrie_solve_end3(best_pairs,triecontents_obs,trieoffsets_obs,j, in Dynprog_end3_known()
H A Dgmap.c497 static Trieoffset_T *trieoffsets_obs = NULL; variable
6924 …Splicetrie_build_via_splicesites(&triecontents_obs,&trieoffsets_obs,&triecontents_max,&trieoffsets… in main()
6952 Splicetrie_build_via_introns(&triecontents_obs,&trieoffsets_obs,splicesites,splicetypes, in main()
7019 trieoffsets_obs,triecontents_obs,trieoffsets_max,triecontents_max); in main()
7035 trieoffsets_obs,triecontents_obs,trieoffsets_max,triecontents_max, in main()
7217 FREE(trieoffsets_obs); in main()