Searched refs:trieoffsets_obs (Results 1 – 5 of 5) sorted by relevance
/dports/biology/gmap/gmap-2020-09-12/src/ |
H A D | splicetrie_build.c | 2419 *trieoffsets_obs = (Trieoffset_T *) CALLOC(nsplicesites,sizeof(Trieoffset_T)); in Splicetrie_build_via_splicesites() 2421 *trieoffsets_obs = (Trieoffset_T *) NULL; in Splicetrie_build_via_splicesites() 2909 (*trieoffsets_obs)[j] = NULL_POINTER; in build_via_introns_size() 2964 (*trieoffsets_obs)[j] = NULL_POINTER; in build_via_introns_size() 3019 (*trieoffsets_obs)[j] = NULL_POINTER; in build_via_introns_size() 3074 (*trieoffsets_obs)[j] = NULL_POINTER; in build_via_introns_size() 3145 *trieoffsets_obs = (Trieoffset_T *) CALLOC(nsplicesites,sizeof(Trieoffset_T)); in Splicetrie_build_via_introns() 3183 (*trieoffsets_obs)[j] = NULL_POINTER; in Splicetrie_build_via_introns() 3237 (*trieoffsets_obs)[j] = NULL_POINTER; in Splicetrie_build_via_introns() 3291 (*trieoffsets_obs)[j] = NULL_POINTER; in Splicetrie_build_via_introns() [all …]
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H A D | splicetrie_build.h | 63 Splicetrie_build_via_splicesites (Triecontent_T **triecontents_obs, Trieoffset_T **trieoffsets_obs, 69 Splicetrie_build_via_introns (Triecontent_T **triecontents_obs, Trieoffset_T **trieoffsets_obs,
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H A D | splicetrie.c | 61 static Trieoffset_T *trieoffsets_obs; variable 82 trieoffsets_obs = trieoffsets_obs_in; in Splicetrie_setup()
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H A D | dynprog_end.c | 107 static Trieoffset_T *trieoffsets_obs; variable 124 trieoffsets_obs = trieoffsets_obs_in; in Dynprog_end_setup() 2852 if (trieoffsets_obs != NULL) { in Dynprog_end5_known() 2854 best_pairs = Splicetrie_solve_end5(best_pairs,triecontents_obs,trieoffsets_obs,j, in Dynprog_end5_known() 3112 if (trieoffsets_obs != NULL) { in Dynprog_end3_known() 3114 best_pairs = Splicetrie_solve_end3(best_pairs,triecontents_obs,trieoffsets_obs,j, in Dynprog_end3_known()
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H A D | gmap.c | 497 static Trieoffset_T *trieoffsets_obs = NULL; variable 6924 …Splicetrie_build_via_splicesites(&triecontents_obs,&trieoffsets_obs,&triecontents_max,&trieoffsets… in main() 6952 Splicetrie_build_via_introns(&triecontents_obs,&trieoffsets_obs,splicesites,splicetypes, in main() 7019 trieoffsets_obs,triecontents_obs,trieoffsets_max,triecontents_max); in main() 7035 trieoffsets_obs,triecontents_obs,trieoffsets_max,triecontents_max, in main() 7217 FREE(trieoffsets_obs); in main()
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