Searched refs:trimmed_coverage (Results 1 – 3 of 3) sorted by relevance
290 $path->{trimmed_coverage},331 $path->{trimmed_coverage} or
580 double trimmed_coverage; member931 if (this->trimmed_coverage < min_trimmed_coverage) { in Stage3_passes_filter()951 if (from->trimmed_coverage + to->trimmed_coverage < min_trimmed_coverage) { in Stage3_passes_filter_chimera()5553 stage3->trimmed_coverage = 0.0; in Stage3_recompute_coverage()5575 …stage3->trimmed_coverage = (double) (querypos2 - querypos1 + 1)/(double) (trim_end - trim_start + … in Stage3_recompute_coverage()6017 …new->trimmed_coverage = (double) (end->querypos - start->querypos + 1)/(double) (trimlength + skip… in Stage3_new()6174 new->trimmed_coverage = old->trimmed_coverage;
1253 double fracidentity, coverage, trimmed_coverage; in Pair_print_pathsummary() local1364 …trimmed_coverage = (double) (querypos2 - querypos1 + 1)/(double) (trim_end - trim_start + skipleng… in Pair_print_pathsummary()1365 FPRINTF(fp," Trimmed coverage: %.1f",((double) rint(1000.0*trimmed_coverage))/10.0); in Pair_print_pathsummary()