Searched refs:uncompressedp (Results 1 – 6 of 6) sorted by relevance
| /dports/biology/gmap/gmap-2020-09-12/src/ |
| H A D | genome-write.c | 125 fill_zero (FILE *fp, Univcoord_T startpos, Univcoord_T endpos, bool uncompressedp, in fill_zero() argument
129 if (uncompressedp == true) { in fill_zero()
146 fill_x (FILE *fp, Univcoord_T startpos, Univcoord_T endpos, bool uncompressedp, in fill_x() argument
150 if (uncompressedp == true) { in fill_x()
222 Univ_IIT_T contig_iit, char *fileroot, bool uncompressedp, in genome_write_file() argument
301 fill_x(refgenome_fp,maxposition,startposition,uncompressedp,index1part); in genome_write_file()
326 if (uncompressedp == true) { in genome_write_file()
367 if (uncompressedp == true) { in genome_write_file()
376 if (uncompressedp == true) { in genome_write_file()
786 bool uncompressedp, bool rawp, bool writefilep, in Genome_write_comp32() argument
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| H A D | genome-write.h | 15 bool uncompressedp, bool rawp, bool writefilep,
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| H A D | compress-write.h | 12 Compress_get_char (FILE *sequence_fp, Univcoord_T position, bool uncompressedp);
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| H A D | gsnap.c | 521 static bool uncompressedp = false; variable
2264 case 'G': uncompressedp = true; break; in parse_command_line()
3089 uncompressedp,genome_access,sharedp); in worker_setup()
3091 uncompressedp,genome_access,sharedp); in worker_setup()
3095 uncompressedp,genome_access,sharedp); in worker_setup()
3097 uncompressedp,genome_access,sharedp); in worker_setup()
3099 uncompressedp,genome_access,sharedp); in worker_setup()
3101 uncompressedp,genome_access,sharedp); in worker_setup()
3116 uncompressedp,genome_access,sharedp); in worker_setup()
3124 uncompressedp,genome_access,sharedp); in worker_setup()
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| H A D | compress-write.c | 100 Compress_get_char (FILE *sequence_fp, Univcoord_T position, bool uncompressedp) { in Compress_get_char() argument
105 if (uncompressedp == true) { in Compress_get_char()
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| H A D | gmap.c | 462 static bool uncompressedp = false; variable
1175 if (user_genomicseg == NULL && uncompressedp == false && straintype == 0) { in update_stage3middle_list()
1183 if (user_genomicseg == NULL && uncompressedp == false && straintype == 0) { in update_stage3middle_list()
1289 if (user_genomicseg == NULL && uncompressedp == false && straintype == 0) { in update_stage3list()
1297 if (user_genomicseg == NULL && uncompressedp == false && straintype == 0) { in update_stage3list()
6016 case 'G': uncompressedp = true; break; in parse_command_line()
6803 uncompressedp,genome_access,sharedp); in main()
6816 uncompressedp,genome_access,sharedp); in main()
6819 uncompressedp,genome_access,sharedp); in main()
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