| /dports/biology/vt/vt-0.57721/lib/htslib/ |
| H A D | vcf.c | 101 vdict_t *d = (vdict_t*)h->dict[BCF_DT_SAMPLE]; in bcf_hdr_add_sample()
147 vdict_t *d = (vdict_t*)h->dict[i]; in bcf_hdr_sync()
421 vdict_t *d = (vdict_t*)hdr->dict[BCF_DT_CTG]; in bcf_hdr_register_hrec()
518 vdict_t *d = (vdict_t*)hdr->dict[BCF_DT_ID]; in bcf_hdr_register_hrec()
609 … vdict_t *d = type==BCF_HL_CTG ? (vdict_t*)hdr->dict[BCF_DT_CTG] : (vdict_t*)hdr->dict[BCF_DT_ID]; in bcf_hdr_get_hrec()
858 vdict_t *d = (vdict_t*)h->dict[i]; in bcf_hdr_destroy()
1693 vdict_t *d = (vdict_t*)h->dict[BCF_DT_CTG]; in bcf_hdr_seqnames()
1886 vdict_t *d = (vdict_t*)h->dict[BCF_DT_ID]; in vcf_parse_format()
2185 vdict_t *d = (vdict_t*)h->dict[BCF_DT_CTG]; in vcf_parse()
2280 vdict_t *d = (vdict_t*)h->dict[BCF_DT_ID]; in vcf_parse()
[all …]
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| /dports/biology/bedtools/bedtools2-2.30.0/src/utils/htslib/ |
| H A D | vcf.c | 101 vdict_t *d = (vdict_t*)h->dict[BCF_DT_SAMPLE]; in bcf_hdr_add_sample()
147 vdict_t *d = (vdict_t*)h->dict[i]; in bcf_hdr_sync()
421 vdict_t *d = (vdict_t*)hdr->dict[BCF_DT_CTG]; in bcf_hdr_register_hrec()
518 vdict_t *d = (vdict_t*)hdr->dict[BCF_DT_ID]; in bcf_hdr_register_hrec()
609 … vdict_t *d = type==BCF_HL_CTG ? (vdict_t*)hdr->dict[BCF_DT_CTG] : (vdict_t*)hdr->dict[BCF_DT_ID]; in bcf_hdr_get_hrec()
858 vdict_t *d = (vdict_t*)h->dict[i]; in bcf_hdr_destroy()
1693 vdict_t *d = (vdict_t*)h->dict[BCF_DT_CTG]; in bcf_hdr_seqnames()
1886 vdict_t *d = (vdict_t*)h->dict[BCF_DT_ID]; in vcf_parse_format()
2185 vdict_t *d = (vdict_t*)h->dict[BCF_DT_CTG]; in vcf_parse()
2280 vdict_t *d = (vdict_t*)h->dict[BCF_DT_ID]; in vcf_parse()
[all …]
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| /dports/biology/stacks/stacks-2.4/htslib/ |
| H A D | vcf.c | 101 vdict_t *d = (vdict_t*)h->dict[BCF_DT_SAMPLE]; in bcf_hdr_add_sample()
147 vdict_t *d = (vdict_t*)h->dict[i]; in bcf_hdr_sync()
421 vdict_t *d = (vdict_t*)hdr->dict[BCF_DT_CTG]; in bcf_hdr_register_hrec()
518 vdict_t *d = (vdict_t*)hdr->dict[BCF_DT_ID]; in bcf_hdr_register_hrec()
609 … vdict_t *d = type==BCF_HL_CTG ? (vdict_t*)hdr->dict[BCF_DT_CTG] : (vdict_t*)hdr->dict[BCF_DT_ID]; in bcf_hdr_get_hrec()
858 vdict_t *d = (vdict_t*)h->dict[i]; in bcf_hdr_destroy()
1693 vdict_t *d = (vdict_t*)h->dict[BCF_DT_CTG]; in bcf_hdr_seqnames()
1886 vdict_t *d = (vdict_t*)h->dict[BCF_DT_ID]; in vcf_parse_format()
2185 vdict_t *d = (vdict_t*)h->dict[BCF_DT_CTG]; in vcf_parse()
2280 vdict_t *d = (vdict_t*)h->dict[BCF_DT_ID]; in vcf_parse()
[all …]
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| /dports/biology/kallisto/kallisto-0.46.1/ext/htslib/ |
| H A D | vcf.c | 101 vdict_t *d = (vdict_t*)h->dict[BCF_DT_SAMPLE]; in bcf_hdr_add_sample()
151 vdict_t *d = (vdict_t*)h->dict[i]; in bcf_hdr_sync()
426 vdict_t *d = (vdict_t*)hdr->dict[BCF_DT_CTG]; in bcf_hdr_register_hrec()
511 vdict_t *d = (vdict_t*)hdr->dict[BCF_DT_ID]; in bcf_hdr_register_hrec()
602 … vdict_t *d = type==BCF_HL_CTG ? (vdict_t*)hdr->dict[BCF_DT_CTG] : (vdict_t*)hdr->dict[BCF_DT_ID]; in bcf_hdr_get_hrec()
853 vdict_t *d = (vdict_t*)h->dict[i]; in bcf_hdr_destroy()
1697 vdict_t *d = (vdict_t*)h->dict[BCF_DT_CTG]; in bcf_hdr_seqnames()
1890 vdict_t *d = (vdict_t*)h->dict[BCF_DT_ID]; in vcf_parse_format()
2187 vdict_t *d = (vdict_t*)h->dict[BCF_DT_CTG]; in vcf_parse()
2282 vdict_t *d = (vdict_t*)h->dict[BCF_DT_ID]; in vcf_parse()
[all …]
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| /dports/biology/vt/vt-0.57721/ |
| H A D | compute_concordance.h | 30 typedef khash_t(vdict) vdict_t; typedef
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| H A D | hts_utils.cpp | 32 typedef khash_t(vdict) vdict_t; typedef
440 vdict_t *d = (vdict_t*)hsrc->dict[BCF_DT_CTG]; in bcf_hdr_transfer_contigs()
503 vdict_t *d = (vdict_t*)hdr->dict[BCF_DT_CTG]; in bcf_hdr_seqlen()
730 vdict_t *d = (vdict_t*)h->dict[BCF_DT_SAMPLE]; in bcf_hdr_get_n_sample()
1209 vdict_t *d = (vdict_t*)h->dict[BCF_DT_CTG]; in bcf_set_chrom()
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| H A D | compute_concordance.cpp | 133 vdict_t *d2 = (vdict_t*)h2->dict[BCF_DT_SAMPLE]; in intersect_samples()
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| /dports/biology/py-pysam/pysam-0.18.0/htslib/ |
| H A D | vcf.c | 107 vdict_t *d = (vdict_t*)h->dict[BCF_DT_SAMPLE]; in bcf_hdr_add_sample_len()
181 vdict_t *d = (vdict_t*)h->dict[i]; in bcf_hdr_sync()
578 vdict_t *d = (vdict_t*)hdr->dict[BCF_DT_CTG]; in bcf_hdr_register_hrec()
697 vdict_t *d = (vdict_t*)hdr->dict[BCF_DT_ID]; in bcf_hdr_register_hrec()
810 … vdict_t *d = type==BCF_HL_CTG ? (vdict_t*)hdr->dict[BCF_DT_CTG] : (vdict_t*)hdr->dict[BCF_DT_ID]; in bcf_hdr_get_hrec()
1094 vdict_t *d = (vdict_t*)h->dict[i]; in bcf_hdr_destroy()
2076 vdict_t *d = (vdict_t*)h->dict[BCF_DT_CTG]; in bcf_hdr_seqnames()
2300 vdict_t *d = (vdict_t*)h->dict[BCF_DT_ID]; in vcf_parse_format()
2689 vdict_t *d = (vdict_t*)h->dict[BCF_DT_ID]; in vcf_parse_filter()
2743 vdict_t *d = (vdict_t*)h->dict[BCF_DT_ID]; in vcf_parse_info()
[all …]
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| /dports/biology/freebayes/freebayes-1.3.5/contrib/htslib/ |
| H A D | vcf.c | 107 vdict_t *d = (vdict_t*)h->dict[BCF_DT_SAMPLE]; in bcf_hdr_add_sample_len()
169 vdict_t *d = (vdict_t*)h->dict[i]; in bcf_hdr_sync()
540 vdict_t *d = (vdict_t*)hdr->dict[BCF_DT_CTG]; in bcf_hdr_register_hrec()
659 vdict_t *d = (vdict_t*)hdr->dict[BCF_DT_ID]; in bcf_hdr_register_hrec()
772 … vdict_t *d = type==BCF_HL_CTG ? (vdict_t*)hdr->dict[BCF_DT_CTG] : (vdict_t*)hdr->dict[BCF_DT_ID]; in bcf_hdr_get_hrec()
1056 vdict_t *d = (vdict_t*)h->dict[i]; in bcf_hdr_destroy()
2032 vdict_t *d = (vdict_t*)h->dict[BCF_DT_CTG]; in bcf_hdr_seqnames()
2256 vdict_t *d = (vdict_t*)h->dict[BCF_DT_ID]; in vcf_parse_format()
2645 vdict_t *d = (vdict_t*)h->dict[BCF_DT_ID]; in vcf_parse_filter()
2699 vdict_t *d = (vdict_t*)h->dict[BCF_DT_ID]; in vcf_parse_info()
[all …]
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| /dports/biology/htslib/htslib-1.14/ |
| H A D | vcf.c | 107 vdict_t *d = (vdict_t*)h->dict[BCF_DT_SAMPLE]; in bcf_hdr_add_sample_len()
181 vdict_t *d = (vdict_t*)h->dict[i]; in bcf_hdr_sync()
578 vdict_t *d = (vdict_t*)hdr->dict[BCF_DT_CTG]; in bcf_hdr_register_hrec()
697 vdict_t *d = (vdict_t*)hdr->dict[BCF_DT_ID]; in bcf_hdr_register_hrec()
810 … vdict_t *d = type==BCF_HL_CTG ? (vdict_t*)hdr->dict[BCF_DT_CTG] : (vdict_t*)hdr->dict[BCF_DT_ID]; in bcf_hdr_get_hrec()
1094 vdict_t *d = (vdict_t*)h->dict[i]; in bcf_hdr_destroy()
2076 vdict_t *d = (vdict_t*)h->dict[BCF_DT_CTG]; in bcf_hdr_seqnames()
2300 vdict_t *d = (vdict_t*)h->dict[BCF_DT_ID]; in vcf_parse_format()
2689 vdict_t *d = (vdict_t*)h->dict[BCF_DT_ID]; in vcf_parse_filter()
2743 vdict_t *d = (vdict_t*)h->dict[BCF_DT_ID]; in vcf_parse_info()
[all …]
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| /dports/biology/py-pysam/pysam-0.18.0/pysam/ |
| H A D | htslib_util.h | 13 typedef khash_t(vdict) vdict_t; typedef
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| H A D | libcbcf.pyx | 844 cdef vdict_t *d
1618 cdef vdict_t *d = <vdict_t *>hdr.dict[BCF_DT_ID]
1630 cdef vdict_t *d = <vdict_t *>hdr.dict[BCF_DT_ID]
1789 cdef vdict_t *d = <vdict_t *>hdr.dict[BCF_DT_CTG]
1804 cdef vdict_t *d
1828 cdef vdict_t *d = <vdict_t *>hdr.dict[BCF_DT_CTG]
1934 cdef vdict_t *d = <vdict_t *>hdr.dict[BCF_DT_SAMPLE]
2202 cdef vdict_t *d
3057 cdef vdict_t *d = <vdict_t*>self.header.ptr.dict[BCF_DT_CTG]
3075 cdef vdict_t *d = <vdict_t*>self.header.ptr.dict[BCF_DT_CTG]
[all …]
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| H A D | libchtslib.pxd | 38 ctypedef struct vdict_t:
58 khint_t kh_get_vdict(vdict_t *d, const char *key)
59 const char *kh_key_vdict "kh_key" (vdict_t *d, khint_t i)
60 bcf_idinfo_t kh_val_vdict "kh_val" (vdict_t *d, khint_t i)
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| H A D | libcbcf.c | 1738 vdict_t *__pyx_v_d;
13139 vdict_t *__pyx_v_d; in __pyx_f_5pysam_7libcbcf_bcf_format_set_value()
24847 vdict_t *__pyx_v_d; in __pyx_pf_5pysam_7libcbcf_21VariantHeaderMetadata_8__getitem__()
25033 vdict_t *__pyx_v_d; in __pyx_pf_5pysam_7libcbcf_21VariantHeaderMetadata_10remove_header()
28327 vdict_t *__pyx_v_d; in __pyx_pf_5pysam_7libcbcf_20VariantHeaderContigs_6__getitem__()
28606 vdict_t *__pyx_v_d; in __pyx_pf_5pysam_7libcbcf_20VariantHeaderContigs_8remove_header()
31505 vdict_t *__pyx_v_d; in __pyx_pf_5pysam_7libcbcf_20VariantHeaderSamples_11__contains__()
35897 vdict_t *__pyx_v_d; in __pyx_f_5pysam_7libcbcf_bcf_header_get_info_id()
50504 vdict_t *__pyx_v_d; in __pyx_pf_5pysam_7libcbcf_13VariantRecord_5chrom_2__set__()
50773 vdict_t *__pyx_v_d; in __pyx_pf_5pysam_7libcbcf_13VariantRecord_6contig_2__set__()
[all …]
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| /dports/biology/bio-mocha/bcftools-1.14/ |
| H A D | vcfannotate.c | 257 typedef khash_t(vdict) vdict_t; typedef
273 … vdict_t *d = type==BCF_HL_CTG ? (vdict_t*)hdr->dict[BCF_DT_CTG] : (vdict_t*)hdr->dict[BCF_DT_ID]; in remove_hdr_lines()
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| /dports/biology/bcftools/bcftools-1.14/ |
| H A D | vcfannotate.c | 257 typedef khash_t(vdict) vdict_t; typedef
273 … vdict_t *d = type==BCF_HL_CTG ? (vdict_t*)hdr->dict[BCF_DT_CTG] : (vdict_t*)hdr->dict[BCF_DT_ID]; in remove_hdr_lines()
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| /dports/biology/py-pysam/pysam-0.18.0/bcftools/ |
| H A D | vcfannotate.c | 257 typedef khash_t(vdict) vdict_t; typedef
273 … vdict_t *d = type==BCF_HL_CTG ? (vdict_t*)hdr->dict[BCF_DT_CTG] : (vdict_t*)hdr->dict[BCF_DT_ID]; in remove_hdr_lines()
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| H A D | vcfannotate.c.pysam.c | 259 typedef khash_t(vdict) vdict_t; typedef
275 … vdict_t *d = type==BCF_HL_CTG ? (vdict_t*)hdr->dict[BCF_DT_CTG] : (vdict_t*)hdr->dict[BCF_DT_ID]; in remove_hdr_lines()
|