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Searched refs:vertLimit (Results 1 – 17 of 17) sorted by relevance

/dports/biology/bbmap/bbmap/jni/
H A DMultiStateAligner11tsJNI.c378 jint * vertLimit, in fillLimitedX() argument
413 vertLimit[rows]=minScore_off; in fillLimitedX()
419 vertLimit[i]=max(vertLimit[i+1]-(prevDefined ? POINTSoff_MATCH2 : POINTSoff_MATCH), floor); in fillLimitedX()
422 vertLimit[i]=max(vertLimit[i+1]-POINTSoff_NOCALL, floor); in fillLimitedX()
447 const jint vlimit=vertLimit[row]; in fillLimitedX()
770 jintArray vertLimit, in Java_align2_MultiStateAligner11tsJNI_fillLimitedXJNI() argument
787 jint * jvertLimit=(jint*)(*env)->GetPrimitiveArrayCritical(env, vertLimit, NULL); in Java_align2_MultiStateAligner11tsJNI_fillLimitedXJNI()
806 (*env)->ReleasePrimitiveArrayCritical(env, vertLimit, jvertLimit, 0); in Java_align2_MultiStateAligner11tsJNI_fillLimitedXJNI()
/dports/biology/bbmap/bbmap/current/align2/
H A DMultiStateAligner10ts.java57 vertLimit=new int[maxRows+1]; in MultiStateAligner10ts()
59 Arrays.fill(vertLimit, BADoff); in MultiStateAligner10ts()
190 vertLimit[rows]=minScore_off; in fillLimitedX() field in MultiStateAligner10ts
195 … vertLimit[i]=Tools.max(vertLimit[i+1]-(prevDefined ? POINTSoff_MATCH2 : POINTSoff_MATCH), floor); in fillLimitedX()
198 vertLimit[i]=Tools.max(vertLimit[i+1]-POINTSoff_NOCALL, floor); in fillLimitedX()
234 final int vlimit=vertLimit[row]; in fillLimitedX()
665 vertLimit[rows]=minScore_off; in fillBanded1()
673 vertLimit[i]=Tools.max(vertLimit[i+1]-POINTSoff_NOCALL, floor); in fillBanded1()
1117 vertLimit[rows]=minScore_off;
1125 vertLimit[i]=Tools.max(vertLimit[i+1]-POINTSoff_NOCALL, floor);
[all …]
H A DMultiStateAligner11ts.java55 vertLimit=KillSwitch.allocInt1D(maxRows+1); in MultiStateAligner11ts()
58 Arrays.fill(vertLimit, BADoff); in MultiStateAligner11ts()
185 vertLimit[rows]=minScore_off; in fillLimitedX() field in MultiStateAligner11ts
190 … vertLimit[i]=Tools.max(vertLimit[i+1]-(prevDefined ? POINTSoff_MATCH2 : POINTSoff_MATCH), floor); in fillLimitedX()
193 vertLimit[i]=Tools.max(vertLimit[i+1]-POINTSoff_NOCALL, floor); in fillLimitedX()
229 final int vlimit=vertLimit[row]; in fillLimitedX()
2398 public final int[] vertLimit;
2404 for(int i=0; i<=rows; i++){sb.append(vertLimit[i]>>SCOREOFFSET).append(",");}
H A DMultiStateAligner9XFlat.java51 vertLimit=KillSwitch.allocInt1D(maxRows+1); in MultiStateAligner9XFlat()
54 Arrays.fill(vertLimit, BADoff); in MultiStateAligner9XFlat()
181 vertLimit[rows]=minScore_off; in fillLimitedX() field in MultiStateAligner9XFlat
186 … vertLimit[i]=Tools.max(vertLimit[i+1]-(prevDefined ? POINTSoff_MATCH2 : POINTSoff_MATCH), floor); in fillLimitedX()
189 vertLimit[i]=Tools.max(vertLimit[i+1]-POINTSoff_NOCALL, floor); in fillLimitedX()
225 final int vlimit=vertLimit[row]; in fillLimitedX()
2199 public final int[] vertLimit;
2205 for(int i=0; i<=rows; i++){sb.append(vertLimit[i]>>SCOREOFFSET).append(",");}
H A DMultiStateAligner9ts.java54 vertLimit=KillSwitch.allocInt1D(maxRows+1); in MultiStateAligner9ts()
57 Arrays.fill(vertLimit, BADoff); in MultiStateAligner9ts()
173 vertLimit[rows]=minScore_off; in fillLimitedX() field in MultiStateAligner9ts
178 … vertLimit[i]=Tools.max(vertLimit[i+1]-(prevDefined ? POINTSoff_MATCH2 : POINTSoff_MATCH), floor); in fillLimitedX()
181 vertLimit[i]=Tools.max(vertLimit[i+1]-POINTSoff_NOCALL, floor); in fillLimitedX()
217 final int vlimit=vertLimit[row]; in fillLimitedX()
2263 public final int[] vertLimit;
2269 for(int i=0; i<=rows; i++){sb.append(vertLimit[i]>>SCOREOFFSET).append(",");}
H A DMultiStateAligner9Flat.java51 vertLimit=KillSwitch.allocInt1D(maxRows+1); in MultiStateAligner9Flat()
54 Arrays.fill(vertLimit, BADoff); in MultiStateAligner9Flat()
182 vertLimit[rows]=minScore_off; in fillLimitedX() field in MultiStateAligner9Flat
187 … vertLimit[i]=Tools.max(vertLimit[i+1]-(prevDefined ? POINTSoff_MATCH2 : POINTSoff_MATCH), floor); in fillLimitedX()
190 vertLimit[i]=Tools.max(vertLimit[i+1]-POINTSoff_NOCALL, floor); in fillLimitedX()
226 final int vlimit=vertLimit[row]; in fillLimitedX()
2308 public final int[] vertLimit;
2314 for(int i=0; i<=rows; i++){sb.append(vertLimit[i]>>SCOREOFFSET).append(",");}
H A DMultiStateAligner9PacBio.java51 vertLimit=KillSwitch.allocInt1D(maxRows+1); in MultiStateAligner9PacBio()
54 Arrays.fill(vertLimit, BADoff); in MultiStateAligner9PacBio()
182 vertLimit[rows]=minScore_off; in fillLimitedX() field in MultiStateAligner9PacBio
187 … vertLimit[i]=Tools.max(vertLimit[i+1]-(prevDefined ? POINTSoff_MATCH2 : POINTSoff_MATCH), floor); in fillLimitedX()
190 vertLimit[i]=Tools.max(vertLimit[i+1]-POINTSoff_NOCALL, floor); in fillLimitedX()
226 final int vlimit=vertLimit[row]; in fillLimitedX()
2308 public final int[] vertLimit;
2314 for(int i=0; i<=rows; i++){sb.append(vertLimit[i]>>SCOREOFFSET).append(",");}
H A DMultiStateAligner11tsJNI.java20 …int maxRows, int maxColumns, int bandwidth, float bandwidthRatio, int[] vertLimit, int[] horizLimi… in fillLimitedXJNI() argument
54 vertLimit=KillSwitch.allocInt1D(maxRows+1); in MultiStateAligner11tsJNI()
57 Arrays.fill(vertLimit, BADoff); in MultiStateAligner11tsJNI()
112 …B_ARRAY,POINTSoff_INS_ARRAY,maxRows,maxColumns,bandwidth,bandwidthRatio,vertLimit,horizLimit,Amino… in fillLimitedX()
1416 public final int[] vertLimit;
1422 for(int i=0; i<=rows; i++){sb.append(vertLimit[i]>>SCOREOFFSET).append(",");}
/dports/biology/bbmap/bbmap/current/aligner/
H A DSingleStateAlignerPacBioAdapter.java35 vertLimit=new int[maxRows+1]; in SingleStateAlignerPacBioAdapter()
37 Arrays.fill(vertLimit, BADoff); in SingleStateAlignerPacBioAdapter()
368 private final int[] vertLimit;
H A DMultiStateAligner9PacBioAdapter.java43 vertLimit=new int[maxRows+1]; in MultiStateAligner9PacBioAdapter()
45 Arrays.fill(vertLimit, BADoff); in MultiStateAligner9PacBioAdapter()
148 vertLimit[rows]=minScore_off; in fillLimitedX() field in MultiStateAligner9PacBioAdapter
150 vertLimit[i]=Tools.max(vertLimit[i+1]-POINTSoff_MATCH2, floor); in fillLimitedX()
166 final int vlimit=vertLimit[row]; in fillLimitedX()
1437 private final int[] vertLimit;
1447 for(int i=0; i<=rows; i++){sb.append(vertLimit[i]>>SCOREOFFSET).append(",");}
H A DMultiStateAligner9PacBioAdapter2.java105 vertLimit=new int[maxRows+1]; in initialize()
107 Arrays.fill(vertLimit, BADoff); in initialize()
204 vertLimit[rows]=minScore_off; in fillLimitedX() field in MultiStateAligner9PacBioAdapter2
206 vertLimit[i]=Tools.max(vertLimit[i+1]-POINTSoff_MATCH2, floor); in fillLimitedX()
222 final int vlimit=vertLimit[row]; in fillLimitedX()
1655 public int[] vertLimit;
1660 for(int i=0; i<=rows; i++){sb.append(vertLimit[i]>>SCOREOFFSET).append(",");}
H A DMultiStateAligner9PacBioAdapter3.java54 vertLimit=new int[maxRows+1]; in MultiStateAligner9PacBioAdapter3()
56 Arrays.fill(vertLimit, BADoff); in MultiStateAligner9PacBioAdapter3()
144 vertLimit[rows]=minScore_off; in fillLimitedX() field in MultiStateAligner9PacBioAdapter3
146 vertLimit[i]=Tools.max(vertLimit[i+1]-POINTSoff_MATCH2, floor); in fillLimitedX()
169 final int vlimit=vertLimit[row]; in fillLimitedX()
1482 private final int[] vertLimit;
1492 for(int i=0; i<=rows; i++){sb.append(vertLimit[i]>>SCOREOFFSET).append(",");}
H A DMultiStateAligner9PacBioAdapter_WithBarriers.java74 vertLimit=new int[maxRows+1]; in MultiStateAligner9PacBioAdapter_WithBarriers()
76 Arrays.fill(vertLimit, BADoff); in MultiStateAligner9PacBioAdapter_WithBarriers()
189 vertLimit[rows]=minScore_off; in fillLimitedX() field in MultiStateAligner9PacBioAdapter_WithBarriers
191 vertLimit[i]=Tools.max(vertLimit[i+1]-POINTSoff_MATCH2, floor); in fillLimitedX()
207 final int vlimit=vertLimit[row]; in fillLimitedX()
2464 public final int[] vertLimit;
2469 for(int i=0; i<=rows; i++){sb.append(vertLimit[i]>>SCOREOFFSET).append(",");}
/dports/x11-toolkits/py-wxPython40/wxPython-4.0.7/wx/lib/agw/
H A Dpeakmeter.py822 vertLimit = self._value*vertBands//self._maxValue
844 if vert < vertLimit:
902 vertLimit = self._value*vertBands//self._maxValue
924 if vert < vertLimit:
/dports/graphics/xpdf/xpdf-4.03/xpdf-qt/
H A DQtPDFCore.cc1023 int winW, winH, horizLimit, vertLimit, horizMax, vertMax; in updateScrollbars() local
1030 tileMap->getScrollLimits(&horizLimit, &vertLimit); in updateScrollbars()
1037 if (vertLimit > winH) { in updateScrollbars()
1038 vertMax = vertLimit - winH; in updateScrollbars()
/dports/graphics/xpdf4/xpdf-4.03/xpdf-qt/
H A DQtPDFCore.cc1023 int winW, winH, horizLimit, vertLimit, horizMax, vertMax; in updateScrollbars() local
1030 tileMap->getScrollLimits(&horizLimit, &vertLimit); in updateScrollbars()
1037 if (vertLimit > winH) { in updateScrollbars()
1038 vertMax = vertLimit - winH; in updateScrollbars()
/dports/cad/electric/electric-7.00/src/io/
H A Diodxf.c1515 INTBIG groupID, vertCount, inEnd, vertLimit, newVertLimit, i; in io_dxfreadpolylineentity() local
1523 vertCount = vertLimit = 0; in io_dxfreadpolylineentity()
1560 if (vertCount >= vertLimit) in io_dxfreadpolylineentity()
1578 if (vertLimit > 0) in io_dxfreadpolylineentity()
1586 vertLimit = newVertLimit; in io_dxfreadpolylineentity()