Searched refs:y_genomicstart (Results 1 – 2 of 2) sorted by relevance
| /dports/biology/gmap/gmap-2020-09-12/src/ |
| H A D | gregion.c | 439 Univcoord_T x_genomicstart, x_genomicend, y_genomicstart, y_genomicend; in gregion_overlap_p() local
452 y_genomicstart = y->chroffset + y->chrstart; in gregion_overlap_p()
455 if (y_genomicstart > x_genomicend || x_genomicstart > y_genomicend) { in gregion_overlap_p()
457 x_genomicstart,x_genomicend,y_genomicstart,y_genomicend)); in gregion_overlap_p()
463 } else if (y_genomicstart < x_genomicstart) { in gregion_overlap_p()
484 if (y_genomicend - y_genomicstart < x_genomicend - x_genomicstart) { in gregion_overlap_p()
485 fraction = (double) overlap/(double) (y_genomicend - y_genomicstart); in gregion_overlap_p()
549 } else if (y_genomicstart > x_genomicstart) { in gregion_overlap_p()
593 overlap = x_genomicend - y_genomicstart; in gregion_overlap_p()
594 if (y_genomicend - y_genomicstart < x_genomicend - x_genomicstart) { in gregion_overlap_p()
[all …]
|
| H A D | stage3hr.c | 7505 Univcoord_T x_genomicstart, y_genomicstart; in duplicate_sort_cmp() local
7548 y_genomicstart = normalize_coord(y->genomicstart,y->circularalias,y->chrlength); in duplicate_sort_cmp()
7552 if (x_genomicstart < y_genomicstart) { in duplicate_sort_cmp()
7554 } else if (x_genomicstart > y_genomicstart) { in duplicate_sort_cmp()
7607 Univcoord_T x_genomicstart, x_genomicend, y_genomicstart, y_genomicend; in duplicate_equiv_cmp() local
7634 y_genomicstart = normalize_coord(y->genomicstart,y->circularalias,y->chrlength); in duplicate_equiv_cmp()
7637 if (x_genomicstart < y_genomicstart) { in duplicate_equiv_cmp()
7639 } else if (x_genomicstart > y_genomicstart) { in duplicate_equiv_cmp()
|