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Searched refs:NM (Results 126 – 150 of 26319) sorted by relevance

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/dports/math/cmlib/cmlib-3.0_8/src/eispack/
H A D	rsgab.f	`1 SUBROUTINE RSGAB(NM,N,A,B,W,MATZ,Z,FV1,FV2,IERR) argument 55 INTEGER N,NM,IERR,MATZ 56 REAL A(NM,N),B(NM,N),W(N),Z(NM,N),FV1(N),FV2(N) 59 IF (N .LE. NM) GO TO 10 63 10 CALL REDUC2(NM,N,A,B,FV2,IERR) 67 CALL TRED1(NM,N,A,W,FV1,FV2) 71 20 CALL TRED2(NM,N,A,W,FV1,Z) 72 CALL TQL2(NM,N,W,FV1,Z,IERR) 74 CALL REBAK(NM,N,B,FV2,N,Z)`
H A D	rg.f	`1 SUBROUTINE RG(NM,N,A,WR,WI,MATZ,Z,IV1,FV1,IERR) argument 62 INTEGER N,NM,IS1,IS2,IERR,MATZ 63 REAL A(NM,N),WR(N),WI(N),Z(NM,N),FV1(N) 67 IF (N .LE. NM) GO TO 10 71 10 CALL BALANC(NM,N,A,IS1,IS2,FV1) 72 CALL ELMHES(NM,N,IS1,IS2,A,IV1) 75 CALL HQR(NM,N,IS1,IS2,A,WR,WI,IERR) 78 20 CALL ELTRAN(NM,N,IS1,IS2,A,IV1,Z) 79 CALL HQR2(NM,N,IS1,IS2,A,WR,WI,Z,IERR) 81 CALL BALBAK(NM,N,IS1,IS2,FV1,N,Z)`
/dports/math/slatec/src/
H A D	rg.f	`2 SUBROUTINE RG (NM, N, A, WR, WI, MATZ, Z, IV1, FV1, IERR) argument 85 INTEGER N,NM,IS1,IS2,IERR,MATZ 86 REAL A(NM,),WR(),WI(),Z(NM,),FV1(*) 90 IF (N .LE. NM) GO TO 10 94 10 CALL BALANC(NM,N,A,IS1,IS2,FV1) 95 CALL ELMHES(NM,N,IS1,IS2,A,IV1) 98 CALL HQR(NM,N,IS1,IS2,A,WR,WI,IERR) 101 20 CALL ELTRAN(NM,N,IS1,IS2,A,IV1,Z) 102 CALL HQR2(NM,N,IS1,IS2,A,WR,WI,Z,IERR) 104 CALL BALBAK(NM,N,IS1,IS2,FV1,N,Z)`
H A D	ch.f	`2 SUBROUTINE CH (NM, N, AR, AI, W, MATZ, ZR, ZI, FV1, FV2, FM1, argument 80 INTEGER I,J,N,NM,IERR,MATZ 81 REAL AR(NM,),AI(NM,),W(),ZR(NM,),ZI(NM,*) 85 IF (N .LE. NM) GO TO 10 89 10 CALL HTRIDI(NM,N,AR,AI,W,FV1,FV2,FM1) 104 CALL TQL2(NM,N,W,FV1,ZR,IERR) 106 CALL HTRIBK(NM,N,AR,AI,FM1,N,ZR,ZI)`
/dports/science/tfel/tfel-3.4.0/include/TFEL/Math/Kriging/
H A D	KrigingDefaultModel3D.hxx	`34 typename NM> 35 struct KrigingDefaultModel<3u,T,NM> 36 : public NM 75 typename NM> 76 const typename KrigingDefaultModel<3u,T,NM>::Drifts 77 …KrigingDefaultModel<3u,T,NM>::drifts[ KrigingDefaultModel<3u,T,NM>::nb] = {KrigingDefaultModel<3u,… 78 KrigingDefaultModel<3u,T,NM>::x, 79 KrigingDefaultModel<3u,T,NM>::y, 80 KrigingDefaultModel<3u,T,NM>::z};`
/dports/science/tfel-edf/tfel-3.2.1/include/TFEL/Math/Kriging/
H A D	KrigingDefaultModel3D.hxx	`34 typename NM> 35 struct KrigingDefaultModel<3u,T,NM> 36 : public NM 75 typename NM> 76 const typename KrigingDefaultModel<3u,T,NM>::Drifts 77 …KrigingDefaultModel<3u,T,NM>::drifts[ KrigingDefaultModel<3u,T,NM>::nb] = {KrigingDefaultModel<3u,… 78 KrigingDefaultModel<3u,T,NM>::x, 79 KrigingDefaultModel<3u,T,NM>::y, 80 KrigingDefaultModel<3u,T,NM>::z};`
/dports/biology/seqan-apps/seqan-seqan-v2.4.0/tests/store/
H A D	amos_to_sam_result.sam	5 r001 163 ref 7 255 16M1D3M = 37 39 TTAGATAAAGAGGATACTG ]]]]]]]]]]]]]]]]]]] NM:i:10 MD:Z:8G0A0T0A1C1… 6 r002 0 ref 9 255 9M1D1M1D7M * 0 0 AAAAGATAAGGGATAAA ]]]]]]]]]]]]]]]]] NM:i:12 MD:Z:1G1T0A1G1T^A1^C0… 7 r003 0 ref 9 255 6M * 0 0 AGCTAA ]]]]]] NM:i:1 MD:Z:2A3 8 r004 0 ref 16 255 6M14D6M * 0 0 ATAGCTCTCAGC ]]]]]]]]]]]] NM:i:20 MD:Z:6^GTGCTAGTAGGCAG0T0C0A0G0C0G 9 r003 272 ref 29 255 6M * 0 0 * * NM:i:3 MD:Z:1A0G2A 10 r001 83 ref 37 255 9M = 7 -39 CAGCGCCAT ]]]]]]]]] NM:i:0 MD:Z:9 11 x1 0 ref2 1 255 20M * 0 0 AGGTTTTATAAAACAAATAA ???????????????????? NM:i:1 MD:Z:16T3 12 x2 0 ref2 2 255 21M * 0 0 GGTTTTATAAAACAAATAATT ????????????????????? NM:i:2 MD:Z:15T3G1 14 x4 0 ref2 10 255 25M * 0 0 CAAATAATTAAGTCTACAGAGCAAC ????????????????????????? NM:i:2 MD:Z:0A3C20 15 x5 0 ref2 12 255 24M * 0 0 AATAATTAAGTCTACAGAGCAACT ???????????????????????? NM:i:1 MD:Z:2C21 [all …]
/dports/biology/samtools/samtools-1.14/test/dat/
H A D	view.004.expected.sam	43 ref1_grp1_p001 147 ref1 25 12 10M = 1 -34 TAGAGTCGAC ---------- RG:Z:grp1 NM:i:0 MD:Z:10 44 ref1_grp2_p001 147 ref1 27 13 10M = 3 -34 GAGTCGACCT .......... RG:Z:grp2 NM:i:0 MD:Z:10 45 ref1_grp1_p002 147 ref1 29 14 10M = 5 -34 GTCGACCTGC ////////// RG:Z:grp1 NM:i:0 MD:Z:10 46 ref1_grp2_p002 147 ref1 31 15 10M = 7 -34 CGACCTGCAG 0000000000 RG:Z:grp2 NM:i:0 MD:Z:10 47 ref1_grp1_p003 147 ref1 33 16 10M = 9 -34 ACCTGCAGGC 1111111111 RG:Z:grp1 NM:i:0 MD:Z:10 48 ref1_grp2_p003 147 ref1 35 17 10M = 11 -34 CTGCAGGCAT 2222222222 RG:Z:grp2 NM:i:0 MD:Z:10 49 ref12_grp1_p001 97 ref1 36 50 10M ref2 2 0 TGCAGGCATG AAAAAAAAAA RG:Z:grp1 NM:i:0 MD:Z:10 50 ref1_grp1_p004 147 ref1 37 18 10M = 13 -34 GCAGGCATGC 3333333333 RG:Z:grp1 NM:i:0 MD:Z:10 51 ref1_grp2_p004 147 ref1 39 19 10M = 15 -34 AGGCATGCAA 4444444444 RG:Z:grp2 NM:i:0 MD:Z:10 52 ref1_grp1_p005 147 ref1 41 20 10M = 17 -34 GCATGCAAGC 5555555555 RG:Z:grp1 NM:i:0 MD:Z:10 [all …]
/dports/biology/samtools/samtools-1.14/test/reheader/
H A D	4_view1.sam.expected	43 ref1_grp1_p001 147 ref1 25 12 10M = 1 -34 TAGAGTCGAC ---------- RG:Z:grp1 NM:i:0 MD:Z:10 44 ref1_grp2_p001 147 ref1 27 13 10M = 3 -34 GAGTCGACCT .......... RG:Z:grp2 NM:i:0 MD:Z:10 45 ref1_grp1_p002 147 ref1 29 14 10M = 5 -34 GTCGACCTGC ////////// RG:Z:grp1 NM:i:0 MD:Z:10 46 ref1_grp2_p002 147 ref1 31 15 10M = 7 -34 CGACCTGCAG 0000000000 RG:Z:grp2 NM:i:0 MD:Z:10 47 ref1_grp1_p003 147 ref1 33 16 10M = 9 -34 ACCTGCAGGC 1111111111 RG:Z:grp1 NM:i:0 MD:Z:10 48 ref1_grp2_p003 147 ref1 35 17 10M = 11 -34 CTGCAGGCAT 2222222222 RG:Z:grp2 NM:i:0 MD:Z:10 49 ref12_grp1_p001 97 ref1 36 50 10M ref2 2 0 TGCAGGCATG AAAAAAAAAA RG:Z:grp1 NM:i:0 MD:Z:10 50 ref1_grp1_p004 147 ref1 37 18 10M = 13 -34 GCAGGCATGC 3333333333 RG:Z:grp1 NM:i:0 MD:Z:10 51 ref1_grp2_p004 147 ref1 39 19 10M = 15 -34 AGGCATGCAA 4444444444 RG:Z:grp2 NM:i:0 MD:Z:10 52 ref1_grp1_p005 147 ref1 41 20 10M = 17 -34 GCATGCAAGC 5555555555 RG:Z:grp1 NM:i:0 MD:Z:10 [all …]
H A D	5_view1.sam.expected	43 ref1_grp1_p001 147 ref1 25 12 10M = 1 -34 TAGAGTCGAC ---------- MD:Z:10 NM:i:0 RG:Z:grp1 44 ref1_grp2_p001 147 ref1 27 13 10M = 3 -34 GAGTCGACCT .......... MD:Z:10 NM:i:0 RG:Z:grp2 45 ref1_grp1_p002 147 ref1 29 14 10M = 5 -34 GTCGACCTGC ////////// MD:Z:10 NM:i:0 RG:Z:grp1 46 ref1_grp2_p002 147 ref1 31 15 10M = 7 -34 CGACCTGCAG 0000000000 MD:Z:10 NM:i:0 RG:Z:grp2 47 ref1_grp1_p003 147 ref1 33 16 10M = 9 -34 ACCTGCAGGC 1111111111 MD:Z:10 NM:i:0 RG:Z:grp1 48 ref1_grp2_p003 147 ref1 35 17 10M = 11 -34 CTGCAGGCAT 2222222222 MD:Z:10 NM:i:0 RG:Z:grp2 49 ref12_grp1_p001 97 ref1 36 50 10M ref2 2 0 TGCAGGCATG AAAAAAAAAA MD:Z:10 NM:i:0 RG:Z:grp1 50 ref1_grp1_p004 147 ref1 37 18 10M = 13 -34 GCAGGCATGC 3333333333 MD:Z:10 NM:i:0 RG:Z:grp1 51 ref1_grp2_p004 147 ref1 39 19 10M = 15 -34 AGGCATGCAA 4444444444 MD:Z:10 NM:i:0 RG:Z:grp2 52 ref1_grp1_p005 147 ref1 41 20 10M = 17 -34 GCATGCAAGC 5555555555 MD:Z:10 NM:i:0 RG:Z:grp1 [all …]
/dports/biology/gatk/gatk-4.2.0.0/src/test/resources/org/broadinstitute/hellbender/tools/spark/RevertSamSpark/
H A D	missing-rg-info.sam	4 …J-JJJFAJAJAJJJFJ<A<-AJFFFA<FFAF< MC:Z:124M27S MD:Z:151 PG:Z:MarkDuplicates NM:i:0 MQ:i:60 UQ:i:0 A… 5 …###################### MC:Z:151M MD:Z:50C4A2G43A2C12C5 PG:Z:MarkDuplicates NM:i:6 MQ:i:48 UQ:i:82 … 6 …JJJFJJ<JJFFFJFJ-JFFJ<JJF<F-F MC:Z:121M30S MD:Z:97T51A1 PG:Z:MarkDuplicates NM:i:2 MQ:i:60 UQ:i:44 … 7 …################################ MC:Z:151M MD:Z:106G14 PG:Z:MarkDuplicates NM:i:1 MQ:i:60 UQ:i:12 … 8 …JJJAJJFFJJFAJJFJFJAFJJFFFFF MC:Z:10M2I118M21S MD:Z:151 PG:Z:MarkDuplicates NM:i:0 MQ:i:60 UQ:i:0 A… 9 …-7JA7-7F<A###################### MC:Z:151M MD:Z:117A10 PG:Z:MarkDuplicates NM:i:3 MQ:i:60 UQ:i:12 … 10 …7JJJJJAJ7JFFAJAJJJJ<JAJAJJ7AJ MC:Z:21S130M MD:Z:21T129 PG:Z:MarkDuplicates NM:i:1 MQ:i:40 UQ:i:41 … 14 …JJJJAFJJFFJFFFJJAJJFAJFAFFFA- MC:Z:135M16S MD:Z:47T103 PG:Z:MarkDuplicates NM:i:1 MQ:i:60 UQ:i:41 … 15 …F<-FJJ-AJ7FFFFAF7#J############## MC:Z:151M MD:Z:35T99 PG:Z:MarkDuplicates NM:i:1 MQ:i:60 UQ:i:41 … 16 …JJJAFJJAFFFFJJFFJJJJJJFJJJFFFAFF MC:Z:135M16S MD:Z:151 PG:Z:MarkDuplicates NM:i:0 MQ:i:60 UQ:i:0 A… [all …]
/dports/biology/bio-mocha/bcftools-1.14/test/mpileup/
H A D	mpileup.4.sam	4 …67=6?$6ABDGD6GGHKGEGHIJIH=BFIKI:DEADBH>CFIE MD:Z:21 RG:Z:ERR229776 AM:i:29 NM:i:0 SM:i:29 MQ:i:29 … 5 …KMLINLMNLMNKJJKLNKMKFAEHGMKPLHFGJIMIKFFFE@; MD:Z:92 RG:Z:ERR229776 AM:i:29 NM:i:0 SM:i:29 MQ:i:29 … 6 …MKBGJ=EGEJMLLMKJJKJLKLK?FCHCNILFEEB?FKAHECE MD:Z:89 RG:Z:ERR229776 AM:i:29 NM:i:0 SM:i:29 MQ:i:29 … 7 …IIKFMHFHMIGGJIJIGJJGHFHAAEAE X0:i:1 X1:i:0 MD:Z:101 RG:Z:ERR229776 AM:i:37 NM:i:0 SM:i:37 MQ:i:60 … 8 …JGLLLJKLKHGHJHGHECKGFGLGGHFB X0:i:1 X1:i:0 MD:Z:101 RG:Z:ERR229776 AM:i:37 NM:i:0 SM:i:37 XT:A:U B… 9 …EHICBCGFJD'?BEF8>>1;<=E?CG?F X0:i:1 X1:i:0 MD:Z:101 RG:Z:ERR229776 AM:i:37 NM:i:0 SM:i:37 MQ:i:60 … 10 …GMFCIJDHJICAIDJJFIHGGIBBHEEI X0:i:1 X1:i:0 MD:Z:101 RG:Z:ERR229776 AM:i:37 NM:i:0 SM:i:37 MQ:i:60 … 11 …C?IIJHHHKHB@IICIICGCGJGDDH?? X0:i:1 X1:i:0 MD:Z:101 RG:Z:ERR229776 AM:i:37 NM:i:0 SM:i:37 XT:A:U B… 13 …JGIJHJ>F9F2=@JCDKHJGAIGFEEEE X0:i:1 X1:i:0 MD:Z:101 RG:Z:ERR999999 AM:i:37 NM:i:0 SM:i:37 MQ:i:60 … 44 …KQD9)@GNLKB<KB18=?87BGILGHGNE8ICF< X0:i:1 X1:i:0 MD:Z:16T84 RG:Z:ERR229776 NM:i:1 XT:A:U BQ:Z:D@@@… [all …]
H A D	indel-AD.1.sam	4 …FFJJJFJFFJFJJFJAJJ)AJF<JFJJFJFJJ<FJFFJJJJ- MD:Z:147^T4 PG:Z:MarkDuplicates NM:i:1 AS:i:147 XS:i:20… 5 …JJJJJJJJ77JJAJJJFJJFJFJJJJ<FAFAAA MD:Z:5C5A22C43C64^C8 PG:Z:MarkDuplicates NM:i:5 AS:i:124 XS:i:24… 6 …FJJJJJJJJJJJJJJJJJJJJJJJJJJF<<FAAJFFAF<A MD:Z:78C64^C8 PG:Z:MarkDuplicates NM:i:2 AS:i:139 XS:i:24… 7 …AJJA<AJJJJJJ7<JFJJJJJ<<JFF7-<<FF<-AFFJF MD:Z:0C136^T14 PG:Z:MarkDuplicates NM:i:2 AS:i:143 XS:i:20… 9 …--<--7----7-7-)---7---7-)))-)-) MD:Z:35T13A47T1T7C7T18 PG:Z:MarkDuplicates NM:i:6 AS:i:104 XS:i:19… 10 …JJJJJJJJJJJJJJJJJJJJFJJJJJJJJFJJJJJJJJJJF< MD:Z:129^T3 PG:Z:MarkDuplicates NM:i:1 AS:i:129 XS:i:20… 11 …JJJJJJJJJJJJJJFJJFFJJJJJFFFJJFFJJJJJAFJJJ7 MD:Z:128^T3 PG:Z:MarkDuplicates NM:i:1 AS:i:128 XS:i:20… 12 …JJJJJJFJJJAFJFF-A<AAFJJJJJ7<FJJJAAAF<FJJJ- MD:Z:128^T3 PG:Z:MarkDuplicates NM:i:1 AS:i:128 XS:i:20… 15 …FJ7<--7A-<AA7AAJAF)AA-A<-A-)77<7F--A-)<<- MD:Z:123^T28 PG:Z:MarkDuplicates NM:i:1 AS:i:144 XS:i:20… 17 …JJJJJJJJJJJJJJJJAFFJJJJJJJJFJJJJFAJJJJJJJ MD:Z:118^T11 PG:Z:MarkDuplicates NM:i:1 AS:i:122 XS:i:22… [all …]
/dports/biology/bcftools/bcftools-1.14/test/mpileup/
H A D	mpileup.4.sam	4 …67=6?$6ABDGD6GGHKGEGHIJIH=BFIKI:DEADBH>CFIE MD:Z:21 RG:Z:ERR229776 AM:i:29 NM:i:0 SM:i:29 MQ:i:29 … 5 …KMLINLMNLMNKJJKLNKMKFAEHGMKPLHFGJIMIKFFFE@; MD:Z:92 RG:Z:ERR229776 AM:i:29 NM:i:0 SM:i:29 MQ:i:29 … 6 …MKBGJ=EGEJMLLMKJJKJLKLK?FCHCNILFEEB?FKAHECE MD:Z:89 RG:Z:ERR229776 AM:i:29 NM:i:0 SM:i:29 MQ:i:29 … 7 …IIKFMHFHMIGGJIJIGJJGHFHAAEAE X0:i:1 X1:i:0 MD:Z:101 RG:Z:ERR229776 AM:i:37 NM:i:0 SM:i:37 MQ:i:60 … 8 …JGLLLJKLKHGHJHGHECKGFGLGGHFB X0:i:1 X1:i:0 MD:Z:101 RG:Z:ERR229776 AM:i:37 NM:i:0 SM:i:37 XT:A:U B… 9 …EHICBCGFJD'?BEF8>>1;<=E?CG?F X0:i:1 X1:i:0 MD:Z:101 RG:Z:ERR229776 AM:i:37 NM:i:0 SM:i:37 MQ:i:60 … 10 …GMFCIJDHJICAIDJJFIHGGIBBHEEI X0:i:1 X1:i:0 MD:Z:101 RG:Z:ERR229776 AM:i:37 NM:i:0 SM:i:37 MQ:i:60 … 11 …C?IIJHHHKHB@IICIICGCGJGDDH?? X0:i:1 X1:i:0 MD:Z:101 RG:Z:ERR229776 AM:i:37 NM:i:0 SM:i:37 XT:A:U B… 13 …JGIJHJ>F9F2=@JCDKHJGAIGFEEEE X0:i:1 X1:i:0 MD:Z:101 RG:Z:ERR999999 AM:i:37 NM:i:0 SM:i:37 MQ:i:60 … 44 …KQD9)@GNLKB<KB18=?87BGILGHGNE8ICF< X0:i:1 X1:i:0 MD:Z:16T84 RG:Z:ERR229776 NM:i:1 XT:A:U BQ:Z:D@@@… [all …]
H A D	indel-AD.1.sam	4 …FFJJJFJFFJFJJFJAJJ)AJF<JFJJFJFJJ<FJFFJJJJ- MD:Z:147^T4 PG:Z:MarkDuplicates NM:i:1 AS:i:147 XS:i:20… 5 …JJJJJJJJ77JJAJJJFJJFJFJJJJ<FAFAAA MD:Z:5C5A22C43C64^C8 PG:Z:MarkDuplicates NM:i:5 AS:i:124 XS:i:24… 6 …FJJJJJJJJJJJJJJJJJJJJJJJJJJF<<FAAJFFAF<A MD:Z:78C64^C8 PG:Z:MarkDuplicates NM:i:2 AS:i:139 XS:i:24… 7 …AJJA<AJJJJJJ7<JFJJJJJ<<JFF7-<<FF<-AFFJF MD:Z:0C136^T14 PG:Z:MarkDuplicates NM:i:2 AS:i:143 XS:i:20… 9 …--<--7----7-7-)---7---7-)))-)-) MD:Z:35T13A47T1T7C7T18 PG:Z:MarkDuplicates NM:i:6 AS:i:104 XS:i:19… 10 …JJJJJJJJJJJJJJJJJJJJFJJJJJJJJFJJJJJJJJJJF< MD:Z:129^T3 PG:Z:MarkDuplicates NM:i:1 AS:i:129 XS:i:20… 11 …JJJJJJJJJJJJJJFJJFFJJJJJFFFJJFFJJJJJAFJJJ7 MD:Z:128^T3 PG:Z:MarkDuplicates NM:i:1 AS:i:128 XS:i:20… 12 …JJJJJJFJJJAFJFF-A<AAFJJJJJ7<FJJJAAAF<FJJJ- MD:Z:128^T3 PG:Z:MarkDuplicates NM:i:1 AS:i:128 XS:i:20… 15 …FJ7<--7A-<AA7AAJAF)AA-A<-A-)77<7F--A-)<<- MD:Z:123^T28 PG:Z:MarkDuplicates NM:i:1 AS:i:144 XS:i:20… 17 …JJJJJJJJJJJJJJJJAFFJJJJJJJJFJJJJFAJJJJJJJ MD:Z:118^T11 PG:Z:MarkDuplicates NM:i:1 AS:i:122 XS:i:22… [all …]
/dports/biology/seqan-apps/seqan-seqan-v2.4.0/apps/sam2matrix/tests/
H A D	ecoli.sam	4 …0)$)))000/-)-22225555522222-(---/-+++&++++/555/5/5555+&+++++'8888-'//+801117 NM:i:2 MD:Z:3T53T24 5 …GCC -///1131'1225500055,555855833%333336/)//00066677::::::::4441,0&0000444666677/? NM:i:3 MD:Z:77 6 …A /+++1+/0/002222)&))//2)&))/222233/35255225555255525555525422===2=2=====2===2==2= NM:i:3 MD:Z:73C5 7 …55711122999///0'-'--046000--+,,$,,)'+,++$,443033//).0.1.--(,02++&+0(-- NM:i:4 MD:Z:3G33A15T22A7 8 …ATC //08-711+172=777====255555055505550-'-0555-1--05552-1-550222---1-201110101+/+/ NM:i:3 MD:Z:77 9 …2222/221.0)%,,&1-,-/(33303--(55/(/-&//8828(88826326611142------/+,'556660005/7 NM:i:4 MD:Z:49G27A 10 …ACA 0)))&000+))/-2+++2+)++1--+++1-111-1-5++5//-1-55/111111//---+7-771/+//778808888= NM:i:4 MD:Z:76 12 SRR254209.200600 272 gi\|170079663\|ref\|NC_010473.1\| 697606 255 3M1D21M1I21M1D34M * 0 0 * * NM:i:3 MD… 13 …TAC 34444444444488885457<<<<<<4===<;;@@@@@99;A<A@A2BB@@A(AAA@4BBBBBBB@BB@BBBBBB4BBB@ NM:i:0 MD:Z:80 14 …A :9969222&2::::::::6=6=@@<@@@<@@B>@@@@@@@(@=@996344444444%.).34411-1133133131---2 NM:i:1 MD:Z:77T3 [all …]
/dports/science/nwchem/nwchem-7b21660b82ebd85ef659f6fba7e1e73433b0bd0a/src/vscf/
H A D	vscf.F	`1236 dimension wave(NM,N),allwave(NM+1,NM,N) 1450 dimension Vc(NM,NM,N,N) 1451 dimension Vtr(NM,NM,NM,N,N,N) 1491 dimension Vc(NM,NM,N,N) 1512 dimension Vtr(NM,NM,NM,N,N,N) 1538 dimension Vtr(NM,NM,NM,N,N,N) 1675 dimension Vtr(NM,NM,NM,N,N,N) 1834 dimension Vtr(NM,NM,NM,N,N,N) 2002 DIMENSION DQ(NM),RQ(NM,N),DIAGV(NM,N) 2003 DIMENSION DMX(NM,N),DMY(NM,N),DMZ(NM,N) [all …]`
/dports/science/nwchem-data/nwchem-7.0.2-release/src/vscf/
H A D	vscf.F	`1236 dimension wave(NM,N),allwave(NM+1,NM,N) 1450 dimension Vc(NM,NM,N,N) 1451 dimension Vtr(NM,NM,NM,N,N,N) 1491 dimension Vc(NM,NM,N,N) 1512 dimension Vtr(NM,NM,NM,N,N,N) 1538 dimension Vtr(NM,NM,NM,N,N,N) 1675 dimension Vtr(NM,NM,NM,N,N,N) 1834 dimension Vtr(NM,NM,NM,N,N,N) 2002 DIMENSION DQ(NM),RQ(NM,N),DIAGV(NM,N) 2003 DIMENSION DMX(NM,N),DMY(NM,N),DMZ(NM,N) [all …]`
/dports/science/mdynamix/md528/makemol/
H A D	makemol.f	347 if(NM(I)(2:2).eq.'e'.or.NM(I)(2:2).eq.'E')then 354 else if(NM(I)(1:2).eq.'Al'.or.NM(I)(1:2).eq.'AL')then 360 else if(NM(I)(1:2).eq.'Br'.or.NM(I)(1:2).eq.'BR'.or. 368 if(NM(I)(1:2).eq.'FE'.or.NM(I)(1:2).eq.'Fe')then 382 if(NM(I)(2:2).eq.'i'.or.NM(I)(2:2).eq.'I')then 389 else if(NM(I)(1:2).eq.'TI'.or.NM(I)(1:2).eq.'Ti')then 392 else if(NM(I)(1:2).eq.'RU'.or.NM(I)(1:2).eq.'Ru')then 455 write(,)' parameters for bond ',NM(IBI),'-',NM(JBJ), 719 +NM(KT),'-',NM(LT),' found' 721 +NM(KT),'-',NM(LT),' found' [all …]
/dports/security/mhash/mhash-0.9.9.9/
H A D	NEWS	`6 NM - Nikos Mavroyanopoulos <nmav@hellug.gr> 90 - TIGER runs on alpha (NM) 99 - Added MD4 (NM) 100 - Added TIGER128 and TIGER160 (NM) 114 - Bugfixes in KEYGEN_ASIS (NM) 118 - Added HAVAL224 (NM) 121 - Bugfixes in hmac implementation. (NM) 128 - Corrected Haval implementation. (NM) 136 - added keygen API (NM) 138 - removed RIPEMD128 (NM) [all …]`
/dports/editors/wxhexeditor/wxHexEditor/mhash/
H A D	NEWS	`6 NM - Nikos Mavroyanopoulos <nmav@hellug.gr> 90 - TIGER runs on alpha (NM) 99 - Added MD4 (NM) 100 - Added TIGER128 and TIGER160 (NM) 114 - Bugfixes in KEYGEN_ASIS (NM) 118 - Added HAVAL224 (NM) 121 - Bugfixes in hmac implementation. (NM) 128 - Corrected Haval implementation. (NM) 136 - added keygen API (NM) 138 - removed RIPEMD128 (NM) [all …]`
/dports/editors/wxhexeditor/wxHexEditor/mhash/mhash-0.9.9/
H A D	NEWS	`6 NM - Nikos Mavroyanopoulos <nmav@hellug.gr> 90 - TIGER runs on alpha (NM) 99 - Added MD4 (NM) 100 - Added TIGER128 and TIGER160 (NM) 114 - Bugfixes in KEYGEN_ASIS (NM) 118 - Added HAVAL224 (NM) 121 - Bugfixes in hmac implementation. (NM) 128 - Corrected Haval implementation. (NM) 136 - added keygen API (NM) 138 - removed RIPEMD128 (NM) [all …]`
/dports/security/mhash/mhash-0.9.9.9/mhash-0.9.9/
H A D	NEWS	`6 NM - Nikos Mavroyanopoulos <nmav@hellug.gr> 90 - TIGER runs on alpha (NM) 99 - Added MD4 (NM) 100 - Added TIGER128 and TIGER160 (NM) 114 - Bugfixes in KEYGEN_ASIS (NM) 118 - Added HAVAL224 (NM) 121 - Bugfixes in hmac implementation. (NM) 128 - Corrected Haval implementation. (NM) 136 - added keygen API (NM) 138 - removed RIPEMD128 (NM) [all …]`
/dports/biology/freebayes/freebayes-1.3.5/contrib/htslib/test/
H A D	index.sam	10 …CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC AS:i:0 XN:i:0 XM:i:0 XO:i:0 XG:i:0 NM:i:0 MD:Z:100 YT:Z:UU 11 …CCCDBCCBDBCCBDDA@>DC?5@?@@??:><<>8>39<37 AS:i:0 XN:i:0 XM:i:0 XO:i:0 XG:i:0 NM:i:0 MD:Z:100 YT:Z:UU 12 …CCCCCDCCCCDCCCCBDCDDBBDDBDBDD@BBB@DBABDB AS:i:0 XN:i:0 XM:i:0 XO:i:0 XG:i:0 NM:i:0 MD:Z:100 YT:Z:UU 13 …>@==>BBBBA?<;@<@######################## AS:i:0 XN:i:0 XM:i:0 XO:i:0 XG:i:0 NM:i:0 MD:Z:100 YT:Z:UU 14 …CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC AS:i:0 XN:i:0 XM:i:0 XO:i:0 XG:i:0 NM:i:0 MD:Z:100 YT:Z:UU 15 …?=A=B.>AA?AADA########################## AS:i:0 XN:i:0 XM:i:0 XO:i:0 XG:i:0 NM:i:0 MD:Z:100 YT:Z:UU 16 …DDBDDBDD@BBBBBBACBBAB=AB>BBBAB>?BA@CAAA? AS:i:0 XN:i:0 XM:i:0 XO:i:0 XG:i:0 NM:i:0 MD:Z:100 YT:Z:UU 18 …CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC AS:i:0 XN:i:0 XM:i:0 XO:i:0 XG:i:0 NM:i:0 MD:Z:100 YT:Z:UU 19 …CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC AS:i:0 XN:i:0 XM:i:0 XO:i:0 XG:i:0 NM:i:0 MD:Z:100 YT:Z:UU 20 …BCBBC?==@BCBB@ABADDDBD=>B>B@<BB?A####### AS:i:0 XN:i:0 XM:i:0 XO:i:0 XG:i:0 NM:i:0 MD:Z:100 YT:Z:UU [all …]
H A D	index_dos.sam	10 …CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC AS:i:0 XN:i:0 XM:i:0 XO:i:0 XG:i:0 NM:i:0 MD:Z:100 YT:Z:UU 11 …CCCDBCCBDBCCBDDA@>DC?5@?@@??:><<>8>39<37 AS:i:0 XN:i:0 XM:i:0 XO:i:0 XG:i:0 NM:i:0 MD:Z:100 YT:Z:UU 12 …CCCCCDCCCCDCCCCBDCDDBBDDBDBDD@BBB@DBABDB AS:i:0 XN:i:0 XM:i:0 XO:i:0 XG:i:0 NM:i:0 MD:Z:100 YT:Z:UU 13 …>@==>BBBBA?<;@<@######################## AS:i:0 XN:i:0 XM:i:0 XO:i:0 XG:i:0 NM:i:0 MD:Z:100 YT:Z:UU 14 …CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC AS:i:0 XN:i:0 XM:i:0 XO:i:0 XG:i:0 NM:i:0 MD:Z:100 YT:Z:UU 15 …?=A=B.>AA?AADA########################## AS:i:0 XN:i:0 XM:i:0 XO:i:0 XG:i:0 NM:i:0 MD:Z:100 YT:Z:UU 16 …DDBDDBDD@BBBBBBACBBAB=AB>BBBAB>?BA@CAAA? AS:i:0 XN:i:0 XM:i:0 XO:i:0 XG:i:0 NM:i:0 MD:Z:100 YT:Z:UU 18 …CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC AS:i:0 XN:i:0 XM:i:0 XO:i:0 XG:i:0 NM:i:0 MD:Z:100 YT:Z:UU 19 …CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC AS:i:0 XN:i:0 XM:i:0 XO:i:0 XG:i:0 NM:i:0 MD:Z:100 YT:Z:UU 20 …BCBBC?==@BCBB@ABADDDBD=>B>B@<BB?A####### AS:i:0 XN:i:0 XM:i:0 XO:i:0 XG:i:0 NM:i:0 MD:Z:100 YT:Z:UU [all …]

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