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Name Date Size #Lines LOC

..08-Dec-2020-

bcf-sr/H08-Dec-2020-8276

fuzz/H08-Dec-2020-153113

longrefs/H08-Dec-2020-397391

maintainer/H08-Dec-2020-189122

mpileup/H03-May-2022-1,001940

tabix/H03-May-2022-306257

auxf#values.samH A D08-Dec-2020751 65

auxf.faH A D08-Dec-202029 32

auxf.fa.faiH A D08-Dec-202018 21

c1#bounds.samH A D08-Dec-2020148 54

c1#clip.samH A D08-Dec-2020337 98

c1#noseq.samH A D08-Dec-2020433 1110

c1#pad1.samH A D08-Dec-2020388 1110

c1#pad2.samH A D08-Dec-2020527 1514

c1#pad3.samH A D08-Dec-2020665 1514

c1#unknown.samH A D08-Dec-2020429 109

c1.faH A D08-Dec-202015 32

c1.fa.faiH A D08-Dec-202014 21

c2#pad.samH A D08-Dec-2020847 2726

c2.faH A D08-Dec-202014 32

c2.fa.faiH A D08-Dec-202012 21

ce#1.samH A D08-Dec-2020341 32

ce#1000.samH A D08-Dec-2020315.1 KiB1,0061,005

ce#2.samH A D08-Dec-2020645 43

ce#5.samH A D08-Dec-20201.8 KiB1211

ce#5b.samH A D08-Dec-20201.8 KiB1312

ce#large_seq.samH A D08-Dec-20202 MiB43

ce#supp.samH A D08-Dec-2020547 76

ce#tag_depadded.samH A D08-Dec-20201.6 KiB1211

ce#tag_padded.samH A D08-Dec-20201.6 KiB1211

ce#unmap.samH A D08-Dec-20201.3 KiB76

ce#unmap1.samH A D08-Dec-20202.7 KiB2120

ce#unmap2.samH A D08-Dec-20205.4 KiB3029

ce.faH A D08-Dec-20201 MiB20,80420,803

ce.fa.faiH A D08-Dec-2020230 87

compare_sam.plH A D08-Dec-20206.3 KiB214130

cross_validate.shH A D08-Dec-20204.2 KiB14676

faidx.faH A D08-Dec-2020289 2218

fastqs.fqH A D08-Dec-202047.5 KiB501500

fieldarith.cH A D08-Dec-20202.4 KiB7540

fieldarith.samH A D08-Dec-2020910 1615

formatcols.vcfH A D08-Dec-2020240 76

formatmissing-out.vcfH A D08-Dec-2020226 76

formatmissing.vcfH A D08-Dec-2020226 76

header_syms.plH A D08-Dec-20203.5 KiB10537

hfile.cH A D08-Dec-202011.7 KiB312244

hts_endian.cH A D08-Dec-202017.2 KiB514413

index.samH A D08-Dec-202052.9 KiB191190

index.vcfH A D08-Dec-202067.3 KiB729728

index_dos.samH A D08-Dec-202053.1 KiB191190

md#1.samH A D08-Dec-20201,017 1312

md.faH A D08-Dec-202045 42

md.fa.faiH A D08-Dec-202013 21

no_hdr_sq_1.expected.samH A D08-Dec-20202 KiB1716

noroundtrip-out.vcfH A D08-Dec-2020325 109

noroundtrip.vcfH A D08-Dec-2020271 98

pileup.cH A D08-Dec-20206.8 KiB257178

plugins-dlhts.cH A D08-Dec-20204.6 KiB175121

range.outH A D08-Dec-20203.4 KiB1817

realn01.faH A D08-Dec-2020719 1413

realn01.fa.faiH A D08-Dec-202021 21

realn01.samH A D08-Dec-20201.8 KiB98

realn01_exp-a.samH A D08-Dec-20202.1 KiB98

realn01_exp-e.samH A D08-Dec-20202.1 KiB98

realn01_exp.samH A D08-Dec-20202.1 KiB98

realn02-r.samH A D08-Dec-20203.7 KiB1312

realn02.faH A D08-Dec-20204.2 KiB7271

realn02.fa.faiH A D08-Dec-202017 21

realn02.samH A D08-Dec-20202.8 KiB1312

realn02_exp-a.samH A D08-Dec-20203.7 KiB1312

realn02_exp-e.samH A D08-Dec-20203.7 KiB1312

realn02_exp.samH A D08-Dec-20203.7 KiB1312

sam.cH A D08-Dec-202077.1 KiB2,2151,773

simple_test_driver.shH A D08-Dec-20205.5 KiB191131

tabix.outH A D08-Dec-202098 21

test-bcf-sr.cH A D08-Dec-20205 KiB152108

test-bcf-sr.plH A D08-Dec-202019.1 KiB632542

test-bcf-translate.cH A D08-Dec-20208.8 KiB20480

test-bcf-translate.outH A D08-Dec-2020869 1918

test-logging.plH A D08-Dec-20202.5 KiB9761

test-parse-reg.cH A D08-Dec-20206.9 KiB205126

test-regidx.cH A D08-Dec-202016.5 KiB474364

test-vcf-api.cH A D08-Dec-202021 KiB589468

test-vcf-api.outH A D08-Dec-20202 KiB3029

test-vcf-hdr-in.vcfH A D08-Dec-20202 KiB2625

test-vcf-hdr.outH A D08-Dec-20201.3 KiB1716

test-vcf-sweep.cH A D08-Dec-20203.7 KiB11662

test-vcf-sweep.outH A D08-Dec-202092 54

test.plH A D08-Dec-202035.6 KiB964735

test_bgzf.cH A D08-Dec-202030.9 KiB1,009796

test_index.cH A D08-Dec-20202.8 KiB8449

test_kfunc.cH A D08-Dec-20203.6 KiB8953

test_kstring.cH A D08-Dec-202011.8 KiB424328

test_realn.cH A D08-Dec-20204.9 KiB171128

test_str2int.cH A D08-Dec-20208.7 KiB226169

test_view.cH A D08-Dec-202014.1 KiB426352

thrash_threads1.cH A D08-Dec-20201.6 KiB4919

thrash_threads2.cH A D08-Dec-20201.6 KiB4717

thrash_threads3.cH A D08-Dec-20201.7 KiB5222

thrash_threads4.cH A D08-Dec-20202.2 KiB7033

thrash_threads5.cH A D08-Dec-20202.1 KiB6836

thrash_threads6.cH A D08-Dec-20203.3 KiB11074

thrash_threads7.cH A D08-Dec-20203.6 KiB12177

thread_pool.mdH A D08-Dec-20202.9 KiB5943

with-shlib.shH A D08-Dec-20202.1 KiB6629

xx#MD.samH A D08-Dec-20201 KiB2322

xx#MD2.samH A D08-Dec-20201.1 KiB2120

xx#blank.samH A D08-Dec-202071 21

xx#large_aux.samH A D08-Dec-2020884.3 KiB54

xx#large_aux2.samH A D08-Dec-2020651 1211

xx#minimal.samH A D08-Dec-2020254 1110

xx#pair.samH A D08-Dec-2020304 87

xx#repeated.samH A D08-Dec-2020298 87

xx#rg.samH A D08-Dec-2020517 1413

xx#tlen.samH A D08-Dec-20201 KiB3534

xx#tlen2.samH A D08-Dec-20201.1 KiB3736

xx#triplet.samH A D08-Dec-2020267 87

xx#unsorted.samH A D08-Dec-2020320 98

xx.faH A D08-Dec-202086 86

xx.fa.faiH A D08-Dec-202044 43