Home
last modified time | relevance | path

Searched refs:add_seq (Results 1 – 25 of 108) sorted by relevance

12345

/dports/biology/stacks/stacks-2.4/src/
H A Dstacks.cc56 int Rem::add_seq(const DNANSeq *seq) { in add_seq() function in Rem
65 int Rem::add_seq(const char *seq) { in add_seq() function in Rem
82 int PStack::add_seq(const char *seq) { in add_seq() function in PStack
91 int PStack::add_seq(const DNANSeq *seq) { in add_seq() function in PStack
132 int Stack::add_seq(const char *seq) { in add_seq() function in Stack
141 int Stack::add_seq(const DNANSeq *seq) { in add_seq() function in Stack
H A Dstacks.h141 int add_seq(const char *);
142 int add_seq(const DNANSeq *);
180 int add_seq(const char *);
181 int add_seq(const DNANSeq *);
198 int add_seq(const char *);
199 int add_seq(const DNANSeq *);
/dports/biology/p5-BioPerl/BioPerl-1.7.7/t/Align/
H A DSimpleAlign.t145 ok $aln->add_seq( $seqs[0] ), 'add_seq';
371 $aln->add_seq(
487 $a->add_seq($s1);
488 $a->add_seq($s2);
489 $a->add_seq($s3);
593 $aln->add_seq($a);
594 $aln->add_seq($b);
595 $aln->add_seq($c);
616 $aln->add_seq($d);
617 $aln->add_seq($e);
[all …]
H A DUtilities.t21 $aa_align->add_seq(Bio::LocatableSeq->new(-id => "n1", -seq => "MLIDVG-MLVLR"));
22 $aa_align->add_seq(Bio::LocatableSeq->new(-id => "n2", -seq => "MLIDVRTPLALR"));
23 $aa_align->add_seq(Bio::LocatableSeq->new(-id => "n3", -seq => "MLI-VR-SLALR"));
/dports/biology/p5-BioPerl/BioPerl-1.7.7/lib/Bio/AlignIO/
H A Dxmfa.pm102 $aln->add_seq($seq);
113 $aln->add_seq($seq);
125 $aln->add_seq($seq);
H A Dfasta.pm110 $aln->add_seq($seq);
154 $aln->add_seq($seq);
/dports/biology/p5-BioPerl/BioPerl-1.7.7/lib/Bio/Align/
H A DUtilities.pm179 $dnaalign->add_seq($newdna);
239 $aa_aln->add_seq($new_aa);
282 $newaln->add_seq(
336 $newaln->add_seq(
473 $aln->add_seq($new_seq);
/dports/devel/spin/Spin-version-6.5.0/Src/
H A Dflow.c240 { open_seq(0); add_seq(Es); in do_unless()
257 open_seq(0); add_seq(Re); in do_unless()
268 { open_seq(0); add_seq(No); in do_unless()
594 add_seq(Lextok *n) in add_seq() function
958 add_seq(nn(a3, ASGN, a3, a5)); /* start value */ in for_setup()
1008 add_seq(nn(z3, ASGN, z3, z1)); /* start value 0 */ in for_index()
1016 add_seq(nn(a5, 'r', a5, expand(a3, 1))); /* receive */ in for_index()
1039 add_seq(rv); /* initial increment */ in for_body()
1047 { add_seq(nn(ZN, ELSE, ZN, ZN)); in for_body()
1051 add_seq(t2); in for_body()
[all …]
/dports/biology/p5-BioPerl/BioPerl-1.7.7/bin/
H A Dbp_search2alnblocks125 $aln->add_seq(shift @seqs);
126 $aln->add_seq(shift @seqs);
/dports/biology/p5-BioPerl/BioPerl-1.7.7/lib/Bio/Search/HSP/
H A DFastaHSP.pm216 $aln->add_seq($query);
217 $aln->add_seq($hit);
/dports/biology/p5-BioPerl/BioPerl-1.7.7/lib/Bio/SeqIO/game/
H A DgameWriter.pm509 my %add_seq = ();
510 $add_seq{residues} = $aa;
511 $add_seq{header} = ['seq',
517 ($add_seq{desc}) = $cds->get_tag_values('product_desc');
521 unless ( $add_seq{desc} && $add_seq{desc} =~ /cds_boundaries/ ) {
527 $add_seq{desc} = "translation from_gene[$gid] " .
532 push @{$self->{add_seqs}}, \%add_seq;
/dports/biology/p5-BioPerl/BioPerl-1.7.7/lib/Bio/
H A DSimpleAlign.pm238 $self->add_seq($seq);
271 $self->add_seq(@_);
274 sub add_seq { subroutine
533 foreach (@sorted) { $aln->add_seq($_) }
668 $aln->add_seq($new);
1154 $aln->add_seq($new_seq);
1157 $aln->add_seq($new_seq);
1316 $aln->add_seq($new);
2867 $new->add_seq($new_seq);
2900 $new->add_seq($new_seq);
[all …]
/dports/databases/py-sqlalchemy12/SQLAlchemy-1.2.19/lib/sqlalchemy/testing/
H A Dschema.py93 def add_seq(c, tbl): function
103 event.listen(col, "after_parent_attach", add_seq, propagate=True)
/dports/databases/py-sqlalchemy11/SQLAlchemy-1.1.18/lib/sqlalchemy/testing/
H A Dschema.py86 def add_seq(c, tbl): function
92 event.listen(col, 'after_parent_attach', add_seq, propagate=True)
/dports/databases/py-sqlalchemy10/SQLAlchemy-1.0.14/lib/sqlalchemy/testing/
H A Dschema.py83 def add_seq(c, tbl): function
89 event.listen(col, 'after_parent_attach', add_seq, propagate=True)
/dports/devel/boost-docs/boost_1_72_0/libs/local_function/doc/
H A Dno_variadic_macros.qbk23 … all compilers with and without variadic macros (see also [@../../test/add_seq.cpp =add_seq.cpp=]):
25 [add_seq]
/dports/devel/boost-python-libs/boost_1_72_0/libs/local_function/doc/
H A Dno_variadic_macros.qbk23 … all compilers with and without variadic macros (see also [@../../test/add_seq.cpp =add_seq.cpp=]):
25 [add_seq]
/dports/databases/percona57-pam-for-mysql/boost_1_59_0/libs/local_function/doc/
H A Dno_variadic_macros.qbk23 … all compilers with and without variadic macros (see also [@../../test/add_seq.cpp =add_seq.cpp=]):
25 [add_seq]
/dports/databases/percona57-server/boost_1_59_0/libs/local_function/doc/
H A Dno_variadic_macros.qbk23 … all compilers with and without variadic macros (see also [@../../test/add_seq.cpp =add_seq.cpp=]):
25 [add_seq]
/dports/databases/xtrabackup/boost_1_59_0/libs/local_function/doc/
H A Dno_variadic_macros.qbk23 … all compilers with and without variadic macros (see also [@../../test/add_seq.cpp =add_seq.cpp=]):
25 [add_seq]
/dports/databases/percona57-client/boost_1_59_0/libs/local_function/doc/
H A Dno_variadic_macros.qbk23 … all compilers with and without variadic macros (see also [@../../test/add_seq.cpp =add_seq.cpp=]):
25 [add_seq]
/dports/devel/boost-libs/boost_1_72_0/libs/local_function/doc/
H A Dno_variadic_macros.qbk23 … all compilers with and without variadic macros (see also [@../../test/add_seq.cpp =add_seq.cpp=]):
25 [add_seq]
/dports/databases/mysqlwsrep57-server/boost_1_59_0/libs/local_function/doc/
H A Dno_variadic_macros.qbk23 … all compilers with and without variadic macros (see also [@../../test/add_seq.cpp =add_seq.cpp=]):
25 [add_seq]
/dports/devel/hyperscan/boost_1_75_0/libs/local_function/doc/
H A Dno_variadic_macros.qbk23 … all compilers with and without variadic macros (see also [@../../test/add_seq.cpp =add_seq.cpp=]):
25 [add_seq]
/dports/math/boolector/boolector-3.2.2/examples/generators/adder/
H A Dadder.py39 def add_seq (list, ext): function
110 result_simple, bw_simple = add_seq (list, num_bits_n - 1)

12345