/dports/biology/stacks/stacks-2.4/src/ |
H A D | stacks.cc | 56 int Rem::add_seq(const DNANSeq *seq) { in add_seq() function in Rem 65 int Rem::add_seq(const char *seq) { in add_seq() function in Rem 82 int PStack::add_seq(const char *seq) { in add_seq() function in PStack 91 int PStack::add_seq(const DNANSeq *seq) { in add_seq() function in PStack 132 int Stack::add_seq(const char *seq) { in add_seq() function in Stack 141 int Stack::add_seq(const DNANSeq *seq) { in add_seq() function in Stack
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H A D | stacks.h | 141 int add_seq(const char *); 142 int add_seq(const DNANSeq *); 180 int add_seq(const char *); 181 int add_seq(const DNANSeq *); 198 int add_seq(const char *); 199 int add_seq(const DNANSeq *);
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/dports/biology/p5-BioPerl/BioPerl-1.7.7/t/Align/ |
H A D | SimpleAlign.t | 145 ok $aln->add_seq( $seqs[0] ), 'add_seq'; 371 $aln->add_seq( 487 $a->add_seq($s1); 488 $a->add_seq($s2); 489 $a->add_seq($s3); 593 $aln->add_seq($a); 594 $aln->add_seq($b); 595 $aln->add_seq($c); 616 $aln->add_seq($d); 617 $aln->add_seq($e); [all …]
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H A D | Utilities.t | 21 $aa_align->add_seq(Bio::LocatableSeq->new(-id => "n1", -seq => "MLIDVG-MLVLR")); 22 $aa_align->add_seq(Bio::LocatableSeq->new(-id => "n2", -seq => "MLIDVRTPLALR")); 23 $aa_align->add_seq(Bio::LocatableSeq->new(-id => "n3", -seq => "MLI-VR-SLALR"));
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/dports/biology/p5-BioPerl/BioPerl-1.7.7/lib/Bio/AlignIO/ |
H A D | xmfa.pm | 102 $aln->add_seq($seq); 113 $aln->add_seq($seq); 125 $aln->add_seq($seq);
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H A D | fasta.pm | 110 $aln->add_seq($seq); 154 $aln->add_seq($seq);
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/dports/biology/p5-BioPerl/BioPerl-1.7.7/lib/Bio/Align/ |
H A D | Utilities.pm | 179 $dnaalign->add_seq($newdna); 239 $aa_aln->add_seq($new_aa); 282 $newaln->add_seq( 336 $newaln->add_seq( 473 $aln->add_seq($new_seq);
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/dports/devel/spin/Spin-version-6.5.0/Src/ |
H A D | flow.c | 240 { open_seq(0); add_seq(Es); in do_unless() 257 open_seq(0); add_seq(Re); in do_unless() 268 { open_seq(0); add_seq(No); in do_unless() 594 add_seq(Lextok *n) in add_seq() function 958 add_seq(nn(a3, ASGN, a3, a5)); /* start value */ in for_setup() 1008 add_seq(nn(z3, ASGN, z3, z1)); /* start value 0 */ in for_index() 1016 add_seq(nn(a5, 'r', a5, expand(a3, 1))); /* receive */ in for_index() 1039 add_seq(rv); /* initial increment */ in for_body() 1047 { add_seq(nn(ZN, ELSE, ZN, ZN)); in for_body() 1051 add_seq(t2); in for_body() [all …]
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/dports/biology/p5-BioPerl/BioPerl-1.7.7/bin/ |
H A D | bp_search2alnblocks | 125 $aln->add_seq(shift @seqs); 126 $aln->add_seq(shift @seqs);
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/dports/biology/p5-BioPerl/BioPerl-1.7.7/lib/Bio/Search/HSP/ |
H A D | FastaHSP.pm | 216 $aln->add_seq($query); 217 $aln->add_seq($hit);
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/dports/biology/p5-BioPerl/BioPerl-1.7.7/lib/Bio/SeqIO/game/ |
H A D | gameWriter.pm | 509 my %add_seq = (); 510 $add_seq{residues} = $aa; 511 $add_seq{header} = ['seq', 517 ($add_seq{desc}) = $cds->get_tag_values('product_desc'); 521 unless ( $add_seq{desc} && $add_seq{desc} =~ /cds_boundaries/ ) { 527 $add_seq{desc} = "translation from_gene[$gid] " . 532 push @{$self->{add_seqs}}, \%add_seq;
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/dports/biology/p5-BioPerl/BioPerl-1.7.7/lib/Bio/ |
H A D | SimpleAlign.pm | 238 $self->add_seq($seq); 271 $self->add_seq(@_); 274 sub add_seq { subroutine 533 foreach (@sorted) { $aln->add_seq($_) } 668 $aln->add_seq($new); 1154 $aln->add_seq($new_seq); 1157 $aln->add_seq($new_seq); 1316 $aln->add_seq($new); 2867 $new->add_seq($new_seq); 2900 $new->add_seq($new_seq); [all …]
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/dports/databases/py-sqlalchemy12/SQLAlchemy-1.2.19/lib/sqlalchemy/testing/ |
H A D | schema.py | 93 def add_seq(c, tbl): function 103 event.listen(col, "after_parent_attach", add_seq, propagate=True)
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/dports/databases/py-sqlalchemy11/SQLAlchemy-1.1.18/lib/sqlalchemy/testing/ |
H A D | schema.py | 86 def add_seq(c, tbl): function 92 event.listen(col, 'after_parent_attach', add_seq, propagate=True)
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/dports/databases/py-sqlalchemy10/SQLAlchemy-1.0.14/lib/sqlalchemy/testing/ |
H A D | schema.py | 83 def add_seq(c, tbl): function 89 event.listen(col, 'after_parent_attach', add_seq, propagate=True)
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/dports/devel/boost-docs/boost_1_72_0/libs/local_function/doc/ |
H A D | no_variadic_macros.qbk | 23 … all compilers with and without variadic macros (see also [@../../test/add_seq.cpp =add_seq.cpp=]): 25 [add_seq]
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/dports/devel/boost-python-libs/boost_1_72_0/libs/local_function/doc/ |
H A D | no_variadic_macros.qbk | 23 … all compilers with and without variadic macros (see also [@../../test/add_seq.cpp =add_seq.cpp=]): 25 [add_seq]
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/dports/databases/percona57-pam-for-mysql/boost_1_59_0/libs/local_function/doc/ |
H A D | no_variadic_macros.qbk | 23 … all compilers with and without variadic macros (see also [@../../test/add_seq.cpp =add_seq.cpp=]): 25 [add_seq]
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/dports/databases/percona57-server/boost_1_59_0/libs/local_function/doc/ |
H A D | no_variadic_macros.qbk | 23 … all compilers with and without variadic macros (see also [@../../test/add_seq.cpp =add_seq.cpp=]): 25 [add_seq]
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/dports/databases/xtrabackup/boost_1_59_0/libs/local_function/doc/ |
H A D | no_variadic_macros.qbk | 23 … all compilers with and without variadic macros (see also [@../../test/add_seq.cpp =add_seq.cpp=]): 25 [add_seq]
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/dports/databases/percona57-client/boost_1_59_0/libs/local_function/doc/ |
H A D | no_variadic_macros.qbk | 23 … all compilers with and without variadic macros (see also [@../../test/add_seq.cpp =add_seq.cpp=]): 25 [add_seq]
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/dports/devel/boost-libs/boost_1_72_0/libs/local_function/doc/ |
H A D | no_variadic_macros.qbk | 23 … all compilers with and without variadic macros (see also [@../../test/add_seq.cpp =add_seq.cpp=]): 25 [add_seq]
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/dports/databases/mysqlwsrep57-server/boost_1_59_0/libs/local_function/doc/ |
H A D | no_variadic_macros.qbk | 23 … all compilers with and without variadic macros (see also [@../../test/add_seq.cpp =add_seq.cpp=]): 25 [add_seq]
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/dports/devel/hyperscan/boost_1_75_0/libs/local_function/doc/ |
H A D | no_variadic_macros.qbk | 23 … all compilers with and without variadic macros (see also [@../../test/add_seq.cpp =add_seq.cpp=]): 25 [add_seq]
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/dports/math/boolector/boolector-3.2.2/examples/generators/adder/ |
H A D | adder.py | 39 def add_seq (list, ext): function 110 result_simple, bw_simple = add_seq (list, num_bits_n - 1)
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