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/dports/devel/R-cran-ModelMetrics/ModelMetrics/R/
H A DModelMetrics.R121 ppv_(actual, predicted, cutoff)
127 ppv_(actual, predicted, cutoff)
151 npv_(actual, predicted, cutoff)
178 recall_(actual, predicted, cutoff)
183 recall_(actual, predicted, cutoff)
188 recall_(actual, predicted, cutoff)
213 tnr_(actual, predicted, cutoff)
218 tnr_(actual, predicted, cutoff)
233 f1Score_(actual, predicted, cutoff)
264 mcc_(actual, predicted, cutoff)
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H A DRcppExports.R20 confusionMatrix_ <- function(actual, predicted, cutoff) { argument
24 ppv_ <- function(actual, predicted, cutoff) { argument
25 .Call('_ModelMetrics_ppv_', PACKAGE = 'ModelMetrics', actual, predicted, cutoff)
28 npv_ <- function(actual, predicted, cutoff) { argument
29 .Call('_ModelMetrics_npv_', PACKAGE = 'ModelMetrics', actual, predicted, cutoff)
32 tnr_ <- function(actual, predicted, cutoff) { argument
36 recall_ <- function(actual, predicted, cutoff) { argument
40 fScore_ <- function(actual, predicted, cutoff, beta) { argument
44 f1Score_ <- function(actual, predicted, cutoff) { argument
52 mcc_ <- function(actual, predicted, cutoff) { argument
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/dports/devel/R-cran-ModelMetrics/ModelMetrics/src/
H A DconfusionMatrix_.cpp10 cMat(0,0) = sum((predicted <= cutoff) & (actual == 0)); in confusionMatrix_()
12 cMat(0,1) = sum((predicted <= cutoff) & (actual == 1)); in confusionMatrix_()
14 cMat(1,0) = sum((predicted > cutoff) & (actual == 0)); in confusionMatrix_()
16 cMat(1,1) = sum((predicted > cutoff) & (actual == 1)); in confusionMatrix_()
57 double TN = sum((predicted < cutoff) & (actual == 0)); in tnr_()
81 double p = ppv_(actual, predicted, cutoff); in fScore_()
82 double r = recall_(actual, predicted, cutoff); in fScore_()
96 double p = ppv_(actual, predicted, cutoff); in f1Score_()
97 double r = recall_(actual, predicted, cutoff); in f1Score_()
120 double TN = sum((predicted < cutoff) & (actual == 0)); in mcc_()
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/dports/math/py-networkx/networkx-2.6.3/networkx/algorithms/shortest_paths/
H A Dunweighted.py56 if cutoff is None:
57 cutoff = float("inf")
135 if cutoff is None:
136 cutoff = float("inf")
184 yield (n, length(G, n, cutoff=cutoff))
338 if cutoff is None:
339 cutoff = float("inf")
422 if cutoff is None:
423 cutoff = float("inf")
459 yield (n, single_source_shortest_path(G, n, cutoff=cutoff))
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/dports/biology/protomol/protomol/framework/topology/
H A DC1SwitchingFunction.cpp16 C1SwitchingFunction::C1SwitchingFunction(Real cutoff):myCutoff(cutoff), in C1SwitchingFunction() argument
17 myCutoff2(cutoff*cutoff), in C1SwitchingFunction()
18 myCutoff_3(1.0/(cutoff*cutoff*cutoff)), in C1SwitchingFunction()
19 my15Cutoff_1(1.5/cutoff), in C1SwitchingFunction()
20 my05Cutoff_3(0.5/(cutoff*cutoff*cutoff)), in C1SwitchingFunction()
21 my15Cutoff_3(1.5/(cutoff*cutoff*cutoff)){} in C1SwitchingFunction()
H A DC2SwitchingFunction.cpp12 C2SwitchingFunction::C2SwitchingFunction(Real switchon,Real cutoff):mySwitchon(switchon), in C2SwitchingFunction() argument
14 myCutoff(cutoff), in C2SwitchingFunction()
15 myCutoff2(cutoff*cutoff), in C2SwitchingFunction()
16 mySwitch1(1.0/power<3>(cutoff*cutoff-switchon*switchon)), in C2SwitchingFunction()
17 mySwitch2(cutoff*cutoff - 3.0*switchon*switchon), in C2SwitchingFunction()
18 mySwitch3(4.0/power<3>(cutoff*cutoff-switchon*switchon)){} in C2SwitchingFunction()
27 Real switchon,cutoff; in make() local
29 values[1].get(cutoff); in make()
30 …alues[0].valid() || !values[0].valid() || switchon < 0.0 || cutoff <= 0.0 || switchon >= cutoff){ in make()
34 return C2SwitchingFunction(switchon,cutoff); in make()
/dports/science/py-MDAnalysis/MDAnalysis-0.19.2/MDAnalysis/analysis/
H A Dleaflet.py148 self._init_graph(cutoff)
150 def _init_graph(self, cutoff): argument
151 self.cutoff = cutoff
172 … adj = distances.contact_matrix(coord, cutoff=self.cutoff, returntype="numpy", box=box)
179 adj = distances.contact_matrix(coord, cutoff=self.cutoff, returntype="sparse", box=box)
184 … adj = distances.contact_matrix(coord, cutoff=self.cutoff, returntype="numpy", box=box)
198 def update(self, cutoff=None): argument
200 if cutoff is None:
201 cutoff = self.cutoff
202 self._init_graph(cutoff)
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/dports/math/m4ri/m4ri-release-20200125/m4ri/
H A Dmp.c38 return 3 * a < 4 * cutoff; in closer()
50 if (closer(A->nrows, cutoff) || closer(A->ncols, cutoff) || closer(B->ncols, cutoff)) { in _mzd_addmul_mp4()
163 if (closer(A->nrows, cutoff) || closer(A->ncols, cutoff) || closer(B->ncols, cutoff)) { in _mzd_mul_mp4()
272 if (cutoff < 0) in mzd_mul_mp()
275 if(cutoff == 0) { in mzd_mul_mp()
279 cutoff = cutoff / m4ri_radix * m4ri_radix; in mzd_mul_mp()
281 cutoff = m4ri_radix; in mzd_mul_mp()
300 if (cutoff < 0) in mzd_addmul_mp()
303 if(cutoff == 0) { in mzd_addmul_mp()
307 cutoff = cutoff / m4ri_radix * m4ri_radix; in mzd_addmul_mp()
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H A Dstrassen.c40 return 3 * a < 4 * cutoff; in closer()
55 if (closer(m, cutoff) || closer(k, cutoff) || closer(n, cutoff)) { in _mzd_mul_even()
77 while (width > cutoff) { in _mzd_mul_even()
345 if (cutoff < 0) in mzd_mul()
348 if(cutoff == 0) { in mzd_mul()
352 cutoff = cutoff / m4ri_radix * m4ri_radix; in mzd_mul()
354 cutoff = m4ri_radix; in mzd_mul()
380 if (closer(m, cutoff) || closer(k, cutoff) || closer(n, cutoff)) { in _mzd_addmul_even()
672 if (cutoff < 0) in mzd_addmul()
675 if(cutoff == 0) { in mzd_addmul()
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/dports/math/igraph/igraph-0.9.5/tests/unit/
H A Digraph_closeness.out33 Unweighted undirected with cutoff
35 Range-limited closeness with cutoff -1
40 Range-limited closeness with cutoff 0
45 Range-limited closeness with cutoff 1
50 Range-limited closeness with cutoff 2.9
55 Range-limited closeness with cutoff 3
60 Range-limited closeness with cutoff 3.1
66 Unweighted directed with cutoff
73 Range-limited directed closeness with cutoff 0
78 Range-limited directed closeness with cutoff 1
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/dports/science/siesta/siesta-4.1.5/Tests/flos_h2o_meshcutoff/
H A Dconv.lua33 local cutoff = flos.Array.range(cutoff_start, cutoff_end, cutoff_step)
34 local Etot = flos.Array.zeros(#cutoff)
48 siesta.Mesh.Cutoff.Minimum = cutoff[icutoff]
60 cutoff[icutoff] = siesta.Mesh.Cutoff.Used
76 if step_cutoff(cutoff[icutoff]) then
77 siesta.Mesh.Cutoff.Minimum = cutoff[icutoff]
93 file:write( ("%8.3e %17.10e %17.10e\n"):format(cutoff[1], Etot[1], 0.) )
94 for i = 2, #cutoff do
110 if icutoff < #cutoff then
116 if cutoff[icutoff] <= cur_cutoff then
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/dports/biology/gmap/gmap-2020-09-12/src/
H A Dorderstat.c201 int cutoff; in Orderstat_double_pct() local
204 if (cutoff > length) { in Orderstat_double_pct()
205 cutoff = length; in Orderstat_double_pct()
212 int cutoff; in Orderstat_double_pct_inplace() local
216 cutoff = length; in Orderstat_double_pct_inplace()
223 int cutoff; in Orderstat_int_pct() local
227 cutoff = length; in Orderstat_int_pct()
234 int cutoff; in Orderstat_long_int_pct() local
238 cutoff = length; in Orderstat_long_int_pct()
245 int cutoff; in Orderstat_int_pct_inplace() local
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/dports/devel/llvm-cheri/llvm-project-37c49ff00e3eadce5d8703fdc4497f28458c64a8/llvm/test/tools/llvm-profdata/
H A Dcutoff.test1 Basic tests for cutoff options in show command.
3 RUN: llvm-profdata show -value-cutoff=1 %p/Inputs/cutoff.proftext | FileCheck %s -check-prefixes=CU…
4 RUN: llvm-profdata show -value-cutoff=1000 %p/Inputs/cutoff.proftext | FileCheck %s -check-prefixes…
5 RUN: llvm-profdata show -all-functions -value-cutoff=1 %p/Inputs/cutoff.proftext | FileCheck %s -ch…
6 RUN: llvm-profdata show -all-functions -value-cutoff=1000 %p/Inputs/cutoff.proftext | FileCheck %s …
7 RUN: llvm-profdata show -value-cutoff=1 -list-below-cutoff %p/Inputs/cutoff.proftext | FileCheck %s…
8 RUN: llvm-profdata show -value-cutoff=1000 -list-below-cutoff %p/Inputs/cutoff.proftext | FileCheck…
/dports/devel/llvm11/llvm-11.0.1.src/test/tools/llvm-profdata/
H A Dcutoff.test1 Basic tests for cutoff options in show command.
3 RUN: llvm-profdata show -value-cutoff=1 %p/Inputs/cutoff.proftext | FileCheck %s -check-prefixes=CU…
4 RUN: llvm-profdata show -value-cutoff=1000 %p/Inputs/cutoff.proftext | FileCheck %s -check-prefixes…
5 RUN: llvm-profdata show -all-functions -value-cutoff=1 %p/Inputs/cutoff.proftext | FileCheck %s -ch…
6 RUN: llvm-profdata show -all-functions -value-cutoff=1000 %p/Inputs/cutoff.proftext | FileCheck %s …
7 RUN: llvm-profdata show -value-cutoff=1 -list-below-cutoff %p/Inputs/cutoff.proftext | FileCheck %s…
8 RUN: llvm-profdata show -value-cutoff=1000 -list-below-cutoff %p/Inputs/cutoff.proftext | FileCheck…
/dports/devel/llvm-devel/llvm-project-f05c95f10fc1d8171071735af8ad3a9e87633120/llvm/test/tools/llvm-profdata/
H A Dcutoff.test1 Basic tests for cutoff options in show command.
3 RUN: llvm-profdata show -value-cutoff=1 %p/Inputs/cutoff.proftext | FileCheck %s -check-prefixes=CU…
4 RUN: llvm-profdata show -value-cutoff=1000 %p/Inputs/cutoff.proftext | FileCheck %s -check-prefixes…
5 RUN: llvm-profdata show -all-functions -value-cutoff=1 %p/Inputs/cutoff.proftext | FileCheck %s -ch…
6 RUN: llvm-profdata show -all-functions -value-cutoff=1000 %p/Inputs/cutoff.proftext | FileCheck %s …
7 RUN: llvm-profdata show -value-cutoff=1 -list-below-cutoff %p/Inputs/cutoff.proftext | FileCheck %s…
8 RUN: llvm-profdata show -value-cutoff=1000 -list-below-cutoff %p/Inputs/cutoff.proftext | FileCheck…
/dports/lang/rust/rustc-1.58.1-src/src/llvm-project/llvm/test/tools/llvm-profdata/
H A Dcutoff.test1 Basic tests for cutoff options in show command.
3 RUN: llvm-profdata show -value-cutoff=1 %p/Inputs/cutoff.proftext | FileCheck %s -check-prefixes=CU…
4 RUN: llvm-profdata show -value-cutoff=1000 %p/Inputs/cutoff.proftext | FileCheck %s -check-prefixes…
5 RUN: llvm-profdata show -all-functions -value-cutoff=1 %p/Inputs/cutoff.proftext | FileCheck %s -ch…
6 RUN: llvm-profdata show -all-functions -value-cutoff=1000 %p/Inputs/cutoff.proftext | FileCheck %s …
7 RUN: llvm-profdata show -value-cutoff=1 -list-below-cutoff %p/Inputs/cutoff.proftext | FileCheck %s…
8 RUN: llvm-profdata show -value-cutoff=1000 -list-below-cutoff %p/Inputs/cutoff.proftext | FileCheck…
/dports/devel/wasi-compiler-rt12/llvm-project-12.0.1.src/llvm/test/tools/llvm-profdata/
H A Dcutoff.test1 Basic tests for cutoff options in show command.
3 RUN: llvm-profdata show -value-cutoff=1 %p/Inputs/cutoff.proftext | FileCheck %s -check-prefixes=CU…
4 RUN: llvm-profdata show -value-cutoff=1000 %p/Inputs/cutoff.proftext | FileCheck %s -check-prefixes…
5 RUN: llvm-profdata show -all-functions -value-cutoff=1 %p/Inputs/cutoff.proftext | FileCheck %s -ch…
6 RUN: llvm-profdata show -all-functions -value-cutoff=1000 %p/Inputs/cutoff.proftext | FileCheck %s …
7 RUN: llvm-profdata show -value-cutoff=1 -list-below-cutoff %p/Inputs/cutoff.proftext | FileCheck %s…
8 RUN: llvm-profdata show -value-cutoff=1000 -list-below-cutoff %p/Inputs/cutoff.proftext | FileCheck…
/dports/devel/wasi-compiler-rt13/llvm-project-13.0.1.src/llvm/test/tools/llvm-profdata/
H A Dcutoff.test1 Basic tests for cutoff options in show command.
3 RUN: llvm-profdata show -value-cutoff=1 %p/Inputs/cutoff.proftext | FileCheck %s -check-prefixes=CU…
4 RUN: llvm-profdata show -value-cutoff=1000 %p/Inputs/cutoff.proftext | FileCheck %s -check-prefixes…
5 RUN: llvm-profdata show -all-functions -value-cutoff=1 %p/Inputs/cutoff.proftext | FileCheck %s -ch…
6 RUN: llvm-profdata show -all-functions -value-cutoff=1000 %p/Inputs/cutoff.proftext | FileCheck %s …
7 RUN: llvm-profdata show -value-cutoff=1 -list-below-cutoff %p/Inputs/cutoff.proftext | FileCheck %s…
8 RUN: llvm-profdata show -value-cutoff=1000 -list-below-cutoff %p/Inputs/cutoff.proftext | FileCheck…
/dports/www/chromium-legacy/chromium-88.0.4324.182/third_party/llvm/llvm/test/tools/llvm-profdata/
H A Dcutoff.test1 Basic tests for cutoff options in show command.
3 RUN: llvm-profdata show -value-cutoff=1 %p/Inputs/cutoff.proftext | FileCheck %s -check-prefixes=CU…
4 RUN: llvm-profdata show -value-cutoff=1000 %p/Inputs/cutoff.proftext | FileCheck %s -check-prefixes…
5 RUN: llvm-profdata show -all-functions -value-cutoff=1 %p/Inputs/cutoff.proftext | FileCheck %s -ch…
6 RUN: llvm-profdata show -all-functions -value-cutoff=1000 %p/Inputs/cutoff.proftext | FileCheck %s …
7 RUN: llvm-profdata show -value-cutoff=1 -list-below-cutoff %p/Inputs/cutoff.proftext | FileCheck %s…
8 RUN: llvm-profdata show -value-cutoff=1000 -list-below-cutoff %p/Inputs/cutoff.proftext | FileCheck…
/dports/devel/wasi-libcxx/llvm-project-13.0.1.src/llvm/test/tools/llvm-profdata/
H A Dcutoff.test1 Basic tests for cutoff options in show command.
3 RUN: llvm-profdata show -value-cutoff=1 %p/Inputs/cutoff.proftext | FileCheck %s -check-prefixes=CU…
4 RUN: llvm-profdata show -value-cutoff=1000 %p/Inputs/cutoff.proftext | FileCheck %s -check-prefixes…
5 RUN: llvm-profdata show -all-functions -value-cutoff=1 %p/Inputs/cutoff.proftext | FileCheck %s -ch…
6 RUN: llvm-profdata show -all-functions -value-cutoff=1000 %p/Inputs/cutoff.proftext | FileCheck %s …
7 RUN: llvm-profdata show -value-cutoff=1 -list-below-cutoff %p/Inputs/cutoff.proftext | FileCheck %s…
8 RUN: llvm-profdata show -value-cutoff=1000 -list-below-cutoff %p/Inputs/cutoff.proftext | FileCheck…
/dports/devel/llvm12/llvm-project-12.0.1.src/llvm/test/tools/llvm-profdata/
H A Dcutoff.test1 Basic tests for cutoff options in show command.
3 RUN: llvm-profdata show -value-cutoff=1 %p/Inputs/cutoff.proftext | FileCheck %s -check-prefixes=CU…
4 RUN: llvm-profdata show -value-cutoff=1000 %p/Inputs/cutoff.proftext | FileCheck %s -check-prefixes…
5 RUN: llvm-profdata show -all-functions -value-cutoff=1 %p/Inputs/cutoff.proftext | FileCheck %s -ch…
6 RUN: llvm-profdata show -all-functions -value-cutoff=1000 %p/Inputs/cutoff.proftext | FileCheck %s …
7 RUN: llvm-profdata show -value-cutoff=1 -list-below-cutoff %p/Inputs/cutoff.proftext | FileCheck %s…
8 RUN: llvm-profdata show -value-cutoff=1000 -list-below-cutoff %p/Inputs/cutoff.proftext | FileCheck…
/dports/graphics/llvm-mesa/llvm-13.0.1.src/test/tools/llvm-profdata/
H A Dcutoff.test1 Basic tests for cutoff options in show command.
3 RUN: llvm-profdata show -value-cutoff=1 %p/Inputs/cutoff.proftext | FileCheck %s -check-prefixes=CU…
4 RUN: llvm-profdata show -value-cutoff=1000 %p/Inputs/cutoff.proftext | FileCheck %s -check-prefixes…
5 RUN: llvm-profdata show -all-functions -value-cutoff=1 %p/Inputs/cutoff.proftext | FileCheck %s -ch…
6 RUN: llvm-profdata show -all-functions -value-cutoff=1000 %p/Inputs/cutoff.proftext | FileCheck %s …
7 RUN: llvm-profdata show -value-cutoff=1 -list-below-cutoff %p/Inputs/cutoff.proftext | FileCheck %s…
8 RUN: llvm-profdata show -value-cutoff=1000 -list-below-cutoff %p/Inputs/cutoff.proftext | FileCheck…
/dports/devel/llvm13/llvm-project-13.0.1.src/llvm/test/tools/llvm-profdata/
H A Dcutoff.test1 Basic tests for cutoff options in show command.
3 RUN: llvm-profdata show -value-cutoff=1 %p/Inputs/cutoff.proftext | FileCheck %s -check-prefixes=CU…
4 RUN: llvm-profdata show -value-cutoff=1000 %p/Inputs/cutoff.proftext | FileCheck %s -check-prefixes…
5 RUN: llvm-profdata show -all-functions -value-cutoff=1 %p/Inputs/cutoff.proftext | FileCheck %s -ch…
6 RUN: llvm-profdata show -all-functions -value-cutoff=1000 %p/Inputs/cutoff.proftext | FileCheck %s …
7 RUN: llvm-profdata show -value-cutoff=1 -list-below-cutoff %p/Inputs/cutoff.proftext | FileCheck %s…
8 RUN: llvm-profdata show -value-cutoff=1000 -list-below-cutoff %p/Inputs/cutoff.proftext | FileCheck…
/dports/math/R-cran-robustbase/robustbase/R/
H A DcovPlot.R35 cutoff= cutoff, id.n = id.n, labels.id, cex.id = cex.id,
44 m.cov = covMcd(x), cutoff = NULL, argument
130 id.n <- length(which(x > cutoff))
137 abline(h = cutoff)
157 abline(v = cutoff, h = cutoff)
176 id.n <- length(which(x > cutoff))
223 if(is.null(cutoff))
258 myddplot(md, rd, cutoff = cutoff, id.n = id.n) # distance-distance plot
268 qqplot(rd, p, cutoff = cutoff, id.n = id.n)
271 qqplot(md, p, cutoff = cutoff, classic = TRUE, id.n = id.n)
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/dports/science/jmol/jmol-14.32.7/src/org/jmol/jvxl/readers/
H A DParameters.java493 cutoff = cutoff * cutoff; in setLobe()
511 cutoff = cutoff * cutoff; in setLp()
525 cutoff = cutoff * cutoff; in setRadical()
555 cutoff = 0.0f; in setSolvent()
647 if (cutoff == Float.MAX_VALUE || cutoff == defaultOrbitalCutoffOld) { in setAtomicOrbital()
650 cutoff = cutoff * cutoff; in setAtomicOrbital()
672 cutoff = cutoff * cutoff; in setMep()
724 if (cutoff == Float.MAX_VALUE || cutoff == 0) in setNci()
725 cutoff = 0.3f; in setNci()
727 cutoff *= cutoff; in setNci()
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