| /dports/archivers/peazip/peazip-8.1.0.src/ |
| H A D | peach.lrs | 48255 +#255#247#247#247#255#2'iG'#255#0'tw'#255#0'v'#131#255#1#130#154#255#0#153#186
118935 +#255#1'iG'#255#4'jQ'#255#2'fV'#255#1'cI'#255#1'^@'#255#4'jL'#255#3'cN'#255#9
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| /dports/astro/cfitsio/cfitsio-3.49/ |
| H A D | cfitsio_mac.sit.hqx | 341 $(J#3!aErN!4849K8G(4iG!%!VZP",E@CpXm!!!'X!!!%5`#3!md!!!*C*YQfB3#
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| /dports/audio/csound/csound-6.15.0/tests/soak/ |
| H A D | chuap.csd | 25 iG = p11
40 aI3, aV2, aV1 chuap iL, iR0, iC2, iG, iGa, iGb, iE, iC1, iI3, iV2, iV1, istep_size
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| /dports/audio/libmikmod/libmikmod-3.3.11.1/macintosh/ |
| H A D | FixTypeAndCreators.hqx | 13 JE'&cG#"MD'&bB@0dCA)JEfBJ+(GSBA3JBA-JG'9iG#NJDA-J)MSL)(4SC@iJ,5e
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| /dports/audio/snack/snack2.2.10/mac/ |
| H A D | snack.mcp.sit.hqx | 53 N`$b@)YId(P$2%CCiLYibK,LNRTQe-iG-PL4ab+4)miC-PK4Yb14)XSDf&!Z5+,6
88 DePF[KTI!AhR&JrSbYp#m!NSS*0XmMR5kl2$8iG(bq1$iR(fdN6lQ(3JM`Brhrhq
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| /dports/biology/bbmap/bbmap/resources/ |
| H A D | blacklist_nt_merged.sketch | 2047 OW=i^iG
15295 oMBi;iG
15844 =iG@^fN
23152 J92:iG<
31708 <DJC>7iG
32587 1D_:L;iG
39323 1iG:QX8h
45516 iG::C7@
67033 ;iG?TU`
76045 TY_7>iG
[all …]
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| H A D | blacklist_prokprot_merged.sketch | 13696 4Z^iG;ma
16931 ;iG<D1F
17532 5iG<0\fc
27967 72iG:`D
28438 1HK:iG<N
30490 8iG@N]B8
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| H A D | blacklist_refseq_merged.sketch | 38004 iG=Rh`V
42643 ;klF\iG
50027 1;cWK^iG
55273 =iG@^fN
67904 1^9iG@;2
78205 3iG^HT=5
89190 @T9IS@iG
91615 5iG]k;GD
97343 4iG<?aFC
109598 2\^:iG<^
[all …]
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| H A D | blacklist_silva_merged.sketch | 7730 cU:02>iG
10783 d>iG=<o?
12715 1hDiK9@iG
15087 771iG=bY
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/app/pubseq_gateway/server/integrationsmoketest/baseline/ |
| H A D | get_splitted_tse_whole | 363 …2\\u00b8\\u00d9\\u00ad:\\u00c0\\u00d8\\u0096\\u001d\\u00a0*5\\u00d5\\u00c3|iG\\u00a9A\\u00a2\\u000…
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| H A D | many_chunk_blob | 30 …15i/gs3y3+iTb2X/vayW5H9U5P+o7PgZJsnvp8vIH9B8/4CB84eVBdpnOH8UZsv/BfPnj1FD8/+iG/P/aUbH8UWhER4vNIXbCy…
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| /dports/biology/py-biopython/biopython-1.79/Tests/HHsuite/ |
| H A D | hhpred_9590198.hhr | 536 T Consensus 43 i~iG~s~~~v~~~~G~P~r~~ 63 (323)
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| H A D | hhsearch_q9bsu1_uniclust_w_ss_pfamA_30.hhr | 136 T Consensus 1 iG~~~~~v~~~lG~P~~~~ 19 (140)
149 T Consensus 62 i~iG~s~~~v~~~~G~p~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~d~~~g~v~~…
232 T Consensus 61 g-----i~iG~s~~~v~~~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~~g~v~~i~~~~ …
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| /dports/biology/py-biopython/biopython-1.79/Tests/Hmmer/ |
| H A D | text_30_hmmscan_010.out | 125 … tE+tv+++ +++++ + +++iG+pl+++++ ++d + ++vppg+vGEl+++g+++a+GYl++ lta +fv+d+++ +yrTGDl+ ++
1970 + ++ +le +iG F l+lrt+++
2001 … +t+ ++++ e + +iG+p+++ +i+++d ++vppg+ GEl+i+g ++a GYlk p lta +fv+ +++ +yrTGD +r++ dG++ ++GR
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| H A D | text_31b2_hmmsearch_001.out | 86 G+ g++e+ + iG+ +vrl dG+ev+++Gi
131 Gf ++t +a +++iG e +lEdG +v
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| H A D | text_31b2_hmmsearch_002.out | 86 G+ g++e+ + iG+ +vrl dG+ev+++Gi
131 Gf ++t +a +++iG e +lEdG +v
318 G+ g++e+ + iG+ +vrl dG+ev+++Gi
363 Gf ++t +a +++iG e +lEdG +v
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| /dports/biology/star/STAR-2.7.9a/source/ |
| H A D | SoloFeature_collapseUMIall.cpp | 84 for (uint32 iG=0; iG<nGenes; iG++) {//collapse UMIs for each gene in collapseUMIall() local
85 uint32 *rGU1=rGU+gReadS[iG]; in collapseUMIall()
87 uint32 nR0 = (gReadS[iG+1]-gReadS[iG])/rguStride; //total number of reads in collapseUMIall()
96 …for (uint32 iR=rguU; iR<gReadS[iG+1]-gReadS[iG]; iR+=rguStride) {//count and collapse identical UM… in collapseUMIall()
172 for (uint32 iR=0; iR<gReadS[iG+1]-gReadS[iG]; iR+=rguStride) {//cycle over reads in collapseUMIall()
177 if (umiCorrected[iG].count(umi)>0) in collapseUMIall()
232 for (uint32 iG=0; iG<nGenes; iG++) {//cycle over genes in collapseUMIall() local
233 uint32 *rGU1=rGU+gReadS[iG]; in collapseUMIall()
234 for (uint32 iR=0; iR<gReadS[iG+1]-gReadS[iG]; iR+=rguStride) {//cycle over reads in collapseUMIall()
239 if (umiCorrected[iG].count(umi)>0) in collapseUMIall()
[all …]
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| H A D | SoloFeature_collapseUMIall_multiMappers.cpp | 88 for (uint32 iG=0; iG<nGenes; iG++) {//collapse UMIs for each gene in collapseUMIall() local
89 uint32 *rGU1=rGU+gReadS[iG]; in collapseUMIall()
91 uint32 nR0 = (gReadS[iG+1]-gReadS[iG])/rguStride; //total number of reads in collapseUMIall()
100 …for (uint32 iR=rguU; iR<gReadS[iG+1]-gReadS[iG]; iR+=rguStride) {//count and collapse identical UM… in collapseUMIall()
176 for (uint32 iR=0; iR<gReadS[iG+1]-gReadS[iG]; iR+=rguStride) {//cycle over reads in collapseUMIall()
181 if (umiCorrected[iG].count(umi)>0) in collapseUMIall()
236 for (uint32 iG=0; iG<nGenes; iG++) {//cycle over genes in collapseUMIall() local
237 uint32 *rGU1=rGU+gReadS[iG]; in collapseUMIall()
238 for (uint32 iR=0; iR<gReadS[iG+1]-gReadS[iG]; iR+=rguStride) {//cycle over reads in collapseUMIall()
243 if (umiCorrected[iG].count(umi)>0) in collapseUMIall()
[all …]
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| H A D | extendAlign.cpp | 10 int iS,iG; in extendAlign() local
23 iG=dG*iExt; in extendAlign()
25 if ((gStart+iG)==(uint)(-1) || G[iG]==5) {//prohibit extension through chr boundary in extendAlign()
35 if (R[iS]>3 || G[iG]>3) continue;//no penalties for Ns in reads or genome in extendAlign()
37 if (G[iG]==R[iS]) {//Match in extendAlign()
61 iG=dG*i; in extendAlign()
63 …if ((gStart+iG)==(uint)(-1) || G[iG]==5 || R[iS]==MARK_FRAG_SPACER_BASE) break; //no extension thr… in extendAlign()
64 if (R[iS]>3 || G[iG]>3) continue;//no penalties for Ns in reads or genome in extendAlign()
66 if (G[iG]==R[iS]) {//Match in extendAlign()
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| H A D | stitchGapIndel.cpp | 42 uint iG=gAend+iR; in stitchGapIndel() local
43 if (iR>iRbest) iG += (uint) inDel; in stitchGapIndel()
44 if (iG>=gapStart) iG += gapLength;//exclude gap in stitchGapIndel()
46 if ( R[rAend+iR]==G[iG] ) { in stitchGapIndel()
48 …} else if (R[rAend+iR]!=G[iG] && R[rAend+iR]<4 && G[iG]<4) {//only penalize mismatches for non-N b… in stitchGapIndel()
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| /dports/cad/opencascade/opencascade-7.6.0/src/BRepSweep/ |
| H A D | BRepSweep_Trsf.cxx | 63 Standard_Integer iG = myGenShapeTool.Index(aGenS); in Process() local
65 myShapes(iG,iD) = aGenS; in Process()
66 myBuiltShapes(iG,iD) = Standard_True; in Process()
78 myShapes(iG,iD) = newShape; in Process()
79 myBuiltShapes(iG,iD) = Standard_True; in Process()
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| /dports/cad/opencascade/opencascade-7.6.0/src/BinMDataXtd/ |
| H A D | BinMDataXtd_ConstraintDriver.cxx | 82 Standard_Integer iG = 1; in Paste() local
83 while (iG <= NbGeom) in Paste()
97 aC->SetGeometry (iG++, aG); in Paste()
159 Standard_Integer iG; in Paste() local
160 for (iG = 1; iG <= NbGeom; iG++) in Paste()
162 Handle(TNaming_NamedShape) aG = aC->GetGeometry(iG); in Paste()
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| /dports/cad/opencascade/opencascade-7.6.0/src/TopOpeBRepBuild/ |
| H A D | TopOpeBRepBuild_GridEE.cxx | 619 Standard_Integer iG = EPit.Current(); in GFillPointTopologyPVS() local
622 if (ispoint) VIG = TopoDS::Vertex(NewVertex(iG)); in GFillPointTopologyPVS()
623 else VIG = TopoDS::Vertex(myDataStructure->Shape(iG)); in GFillPointTopologyPVS()
715 if(tSPS){std::cout<<iG<<" : ";GdumpORIPARPNT(ori,par,P);std::cout<<std::endl;} in GFillPointTopologyPVS()
748 if(tSPS){std::cout<<iG<<" : ";GdumpORIPARPNT(ovpv,parf,PF);std::cout<<std::endl;} in GFillPointTopologyPVS()
768 if(tSPS){std::cout<<iG<<" : ";GdumpORIPARPNT(ovpv,parl,PR);std::cout<<std::endl;} in GFillPointTopologyPVS()
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| H A D | TopOpeBRepBuild_GridSS.cxx | 154 Standard_Integer iEinterf=0; Standard_Integer iG = FUN_getG(p3d,EPIlist,HDS,iEinterf); in FUN_EPIforEvisoONperiodicF() local
155 if (iG == 0) { in FUN_EPIforEvisoONperiodicF()
165 (T,TopOpeBRepDS_EDGE,iEinterf,TopOpeBRepDS_POINT,iG,parone); in FUN_EPIforEvisoONperiodicF()
473 Standard_Integer iG = SSit.Current(); in GFillSurfaceTopologySFS() local
474 const TopTools_ListOfShape& LnewF = NewFaces(iG); in GFillSurfaceTopologySFS()
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| H A D | TopOpeBRepBuild_fctwes.cxx | 176 Standard_Integer iG = FCit.Current(); in GFillCurveTopologyWES() local
177 const TopTools_ListOfShape& LnewE = NewEdges(iG); in GFillCurveTopologyWES()
219 …if (tSPS) debaddpwes(iWESF,TB,iG,neworiE,(TopOpeBRepBuild_Builder* const)this,&WES,"GFillCurveTopo… in GFillCurveTopologyWES()
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