1# hmmsearch :: search profile(s) against a sequence database 2# HMMER 3.1b2 (February 2015); http://hmmer.org/ 3# Copyright (C) 2015 Howard Hughes Medical Institute. 4# Freely distributed under the GNU General Public License (GPLv3). 5# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 6# query HMM file: ../params/infile_hmm 7# target sequence database: /r_arc70 8# output directed to file: ../results/outfile 9# MSA of all hits saved to file: ../results/outfile_multi_sto 10# per-seq hits tabular output: ../results/tbl 11# per-dom hits tabular output: ../results/domtbl 12# sequence reporting threshold: E-value <= 1 13# number of worker threads: 12 14# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 15 16Query: infile_sto [M=46] 17Scores for complete sequences (score includes all domains): 18 --- full sequence --- --- best 1 domain --- -#dom- 19 E-value score bias E-value score bias exp N Sequence Description 20 ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 21 ------ inclusion threshold ------ 22 0.017 20.1 0.6 0.03 19.3 0.6 1.3 1 KYH38259.1 alanine acetyltransferase [Candidatus Bathyar 23 0.13 17.3 0.7 0.27 16.3 0.1 1.7 2 WP_054299021.1 ribosomal-protein-alanine N-acetyltransferase 24 0.14 17.3 0.1 0.23 16.5 0.1 1.3 1 WP_054584921.1 hypothetical protein [Halolamina pelagica]KP 25 0.18 16.9 0.7 0.35 15.9 0.7 1.5 1 WP_052883773.1 hypothetical protein [Thermofilum sp. 1807-2] 26 0.39 15.8 0.0 1.3e+02 7.7 0.0 2.5 2 KYK22897.1 hypothetical protein AYK24_08245 [Thermoplasm 27 0.41 15.7 0.2 26 9.9 0.0 3.2 3 AIF02201.1 GTPase domain-containing protein [uncultured 28 0.48 15.5 0.7 1.1e+03 4.8 0.1 3.9 4 WP_062399658.1 hypothetical protein [Methanogenium cariaci] 29 0.48 15.5 0.0 51 9.0 0.0 2.5 2 KYK32494.1 hypothetical protein AYK19_02995 [Thermoplasm 30 0.69 15.0 0.1 9.8 11.3 0.0 2.5 2 KUO39566.1 hypothetical protein APZ16_01915 [Hadesarchae 31 0.9 14.6 0.1 1.7 13.7 0.1 1.4 1 OGD45671.1 hypothetical protein A3K79_06915 [Candidatus 32 33 34Domain annotation for each sequence (and alignments): 35>> KYH38259.1 alanine acetyltransferase [Candidatus Bathyarchaeota archaeon B23] 36 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc 37 --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 38 1 ? 19.3 0.6 4.4e-07 0.03 5 27 .. 49 71 .. 47 75 .. 0.91 39 40 Alignments for each domain: 41 == domain 1 score: 19.3 bits; conditional E-value: 4.4e-07 42 infile_sto 5 aDGeivGfvwGtpgganeGkviG 27 43 +DG++vG+v+G+ +ga +G vi 44 KYH38259.1 49 VDGRVVGYVMGEMEGAKVGHVIN 71 45 7******************9996 PP 46 47>> WP_054299021.1 ribosomal-protein-alanine N-acetyltransferase RimI [Methanosarcina flavescens]KPL45943.1 ribosomal-p 48 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc 49 --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 50 1 ? 16.3 0.1 3.9e-06 0.27 4 25 .. 44 65 .. 43 71 .. 0.87 51 2 ? -2.3 0.0 2.6 1.8e+05 4 9 .. 132 137 .. 130 139 .. 0.54 52 53 Alignments for each domain: 54 == domain 1 score: 16.3 bits; conditional E-value: 3.9e-06 55 infile_sto 4 eaDGeivGfvwGtpgganeGkv 25 56 e DG++vG+v G+ +neG + 57 WP_054299021.1 44 EQDGKVVGYVVGYRSAENEGHI 65 58 78******************76 PP 59 60 == domain 2 score: -2.3 bits; conditional E-value: 2.6 61 infile_sto 4 eaDGei 9 62 ++DG + 63 WP_054299021.1 132 GEDGMV 137 64 555554 PP 65 66>> WP_054584921.1 hypothetical protein [Halolamina pelagica]KPN29154.1 hypothetical protein SY89_03388 [Halolamina pel 67 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc 68 --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 69 1 ? 16.5 0.1 3.3e-06 0.23 14 37 .. 14 38 .. 10 42 .. 0.86 70 71 Alignments for each domain: 72 == domain 1 score: 16.5 bits; conditional E-value: 3.3e-06 73 infile_sto 14 wGtpgganeGkviGfevrlEdGs.e 37 74 +G+ +a+ G ++G +vr+EdG+ 75 WP_054584921.1 14 EGKHVLAPDGEMVGEVVRTEDGTaF 38 76 799999****************944 PP 77 78>> WP_052883773.1 hypothetical protein [Thermofilum sp. 1807-2]AKG38376.1 hypothetical protein MA03_02555 [Thermofilum 79 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc 80 --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 81 1 ? 15.9 0.7 5.2e-06 0.35 15 43 .. 290 321 .. 279 323 .. 0.74 82 83 Alignments for each domain: 84 == domain 1 score: 15.9 bits; conditional E-value: 5.2e-06 85 infile_sto 15 GtpgganeG..kviGf.evrlEdGsevnasGi 43 86 G+ g++e+ + iG+ +vrl dG+ev+++Gi 87 WP_052883773.1 290 GEVVGEFENsfRSIGYlTVRLADGREVTVGGI 321 88 4444555552245******************9 PP 89 90>> KYK22897.1 hypothetical protein AYK24_08245 [Thermoplasmatales archaeon SG8-52-4] 91 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc 92 --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 93 1 ? 5.4 0.0 0.01 7e+02 19 37 .. 94 112 .. 90 114 .. 0.88 94 2 ? 7.7 0.0 0.002 1.3e+02 5 26 .. 185 206 .. 178 209 .. 0.92 95 96 Alignments for each domain: 97 == domain 1 score: 5.4 bits; conditional E-value: 0.01 98 infile_sto 19 ganeGkviGf.evrlEdGse 37 99 an G viG+ + r+ dG + 100 KYK22897.1 94 HANNG-VIGSkSWRFHDGKT 112 101 5999*.***********976 PP 102 103 == domain 2 score: 7.7 bits; conditional E-value: 0.002 104 infile_sto 5 aDGeivGfvwGtpgganeGkvi 26 105 DG+i+ + w + + ++ +kvi 106 KYK22897.1 185 PDGKIISYKWSYHDVKTPNKVI 206 107 6******************998 PP 108 109>> AIF02201.1 GTPase domain-containing protein [uncultured marine group II/III euryarchaeote KM3_155_E06] 110 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc 111 --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 112 1 ? 1.9 0.1 0.13 8.7e+03 2 15 .. 71 84 .. 70 89 .. 0.86 113 2 ? -2.9 0.0 4 2.7e+05 10 18 .. 295 303 .. 294 310 .. 0.82 114 3 ? 9.9 0.0 0.00038 26 11 39 .. 397 423 .. 397 426 .. 0.88 115 116 Alignments for each domain: 117 == domain 1 score: 1.9 bits; conditional E-value: 0.13 118 infile_sto 2 edeaDGeivGfvwG 15 119 +de+DG i+ + G 120 AIF02201.1 71 DDERDGSICQPNTG 84 121 89******998888 PP 122 123 == domain 2 score: -2.9 bits; conditional E-value: 4 124 infile_sto 10 vGfvwGtpg 18 125 + +v+G+p+ 126 AIF02201.1 295 IAYVPGEPE 303 127 689999976 PP 128 129 == domain 3 score: 9.9 bits; conditional E-value: 0.00038 130 infile_sto 11 GfvwGtpgganeGkviGfevrlEdGsevn 39 131 Gf ++t +a +++iG e +lEdG +v 132 AIF02201.1 397 GFIRAT--DARTNRIIGAEHELEDGAVVK 423 133 677788..8999***************97 PP 134 135>> WP_062399658.1 hypothetical protein [Methanogenium cariaci] 136 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc 137 --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 138 1 ? -1.3 0.0 1.3 8.7e+04 31 38 .. 87 94 .. 86 97 .. 0.74 139 2 ? 2.1 0.0 0.11 7.4e+03 31 43 .. 125 137 .. 124 139 .. 0.85 140 3 ? 3.7 0.0 0.035 2.4e+03 31 45 .. 165 179 .. 164 180 .. 0.83 141 4 ? 4.8 0.1 0.016 1.1e+03 31 43 .. 205 217 .. 202 220 .. 0.82 142 143 Alignments for each domain: 144 == domain 1 score: -1.3 bits; conditional E-value: 1.3 145 infile_sto 31 rlEdGsev 38 146 ++EdGs++ 147 WP_062399658.1 87 LTEDGSIF 94 148 57999876 PP 149 150 == domain 2 score: 2.1 bits; conditional E-value: 0.11 151 infile_sto 31 rlEdGsevnasGi 43 152 ++E+Gs+v+ +G 153 WP_062399658.1 125 LTENGSIVAWGGW 137 154 68******99985 PP 155 156 == domain 3 score: 3.7 bits; conditional E-value: 0.035 157 infile_sto 31 rlEdGsevnasGisk 45 158 ++EdG++v+ +G ++ 159 WP_062399658.1 165 LTEDGMIVAWGGWDR 179 160 68******9999765 PP 161 162 == domain 4 score: 4.8 bits; conditional E-value: 0.016 163 infile_sto 31 rlEdGsevnasGi 43 164 ++EdG++v+ +G 165 WP_062399658.1 205 LTEDGTIVAWGGG 217 166 6899999999986 PP 167 168>> KYK32494.1 hypothetical protein AYK19_02995 [Thermoplasmatales archaeon DG-70-1] 169 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc 170 --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 171 1 ? 3.9 0.0 0.03 2e+03 8 23 .. 24 39 .. 24 41 .. 0.91 172 2 ? 9.0 0.0 0.00075 51 14 39 .. 228 251 .. 225 255 .. 0.84 173 174 Alignments for each domain: 175 == domain 1 score: 3.9 bits; conditional E-value: 0.03 176 infile_sto 8 eivGfvwGtpgganeG 23 177 +i+++ Gt+g+an + 178 KYK32494.1 24 RIIDVKTGTAGKANQD 39 179 69************97 PP 180 181 == domain 2 score: 9.0 bits; conditional E-value: 0.00075 182 infile_sto 14 wGtpgganeGkviGf.evrlEdGsevn 39 183 +G+ + +e+ vi + +++ E+G++v+ 184 KYK32494.1 228 RGK--DTFEK-VIKSiSLLIENGMKVR 251 185 688..45999.**************97 PP 186 187>> KUO39566.1 hypothetical protein APZ16_01915 [Hadesarchaea archaeon YNP_45] 188 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc 189 --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 190 1 ? 0.6 0.0 0.33 2.2e+04 32 44 .. 36 48 .. 33 50 .. 0.86 191 2 ? 11.3 0.0 0.00014 9.8 28 44 .. 163 179 .. 155 181 .. 0.88 192 193 Alignments for each domain: 194 == domain 1 score: 0.6 bits; conditional E-value: 0.33 195 infile_sto 32 lEdGsevnasGis 44 196 EdG +++a+ ++ 197 KUO39566.1 36 SEDGPVTAAGAFT 48 198 59********998 PP 199 200 == domain 2 score: 11.3 bits; conditional E-value: 0.00014 201 infile_sto 28 fevrlEdGsevnasGis 44 202 +++lEdG+ vn++Gi 203 KUO39566.1 163 VQIELEDGTPVNIGGIA 179 204 589************96 PP 205 206>> OGD45671.1 hypothetical protein A3K79_06915 [Candidatus Bathyarchaeota archaeon RBG_13_46_16b] 207 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc 208 --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 209 1 ? 13.7 0.1 2.6e-05 1.7 4 16 .. 65 77 .. 64 81 .. 0.89 210 211 Alignments for each domain: 212 == domain 1 score: 13.7 bits; conditional E-value: 2.6e-05 213 infile_sto 4 eaDGeivGfvwGt 16 214 eaDGei+G+v+G+ 215 OGD45671.1 65 EADGEIIGYVQGE 77 216 89**********8 PP 217 218 219 220Internal pipeline statistics summary: 221------------------------------------- 222Query model(s): 1 (46 nodes) 223Target sequences: 679520 (173599232 residues searched) 224Passed MSV filter: 26202 (0.0385596); expected 13590.4 (0.02) 225Passed bias filter: 18222 (0.026816); expected 13590.4 (0.02) 226Passed Vit filter: 1432 (0.00210737); expected 679.5 (0.001) 227Passed Fwd filter: 51 (7.5053e-05); expected 6.8 (1e-05) 228Initial search space (Z): 679520 [actual number of targets] 229Domain search space (domZ): 10 [number of targets reported over threshold] 230# CPU time: 5.29u 0.50s 00:00:05.79 Elapsed: 00:00:05.83 231# Mc/sec: 1369.74 232// 233# hmmsearch :: search profile(s) against a sequence database 234# HMMER 3.1b2 (February 2015); http://hmmer.org/asdasd 235# Copyright (C) 2015 Howard Hughes Medical Institute. 236# Freely distributed under the GNU General Public License (GPLv3). 237# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 238# query HMM file: ../params/infile_hmm 239# target sequence database: /r_arc70 240# output directed to file: ../results/outfile 241# MSA of all hits saved to file: ../results/outfile_multi_sto 242# per-seq hits tabular output: ../results/tbl 243# per-dom hits tabular output: ../results/domtbl 244# sequence reporting threshold: E-value <= 1 245# number of worker threads: 12 246# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 247 248Query: infile_sto2 [M=46] 249Scores for complete sequences (score includes all domains): 250 --- full sequence --- --- best 1 domain --- -#dom- 251 E-value score bias E-value score bias exp N Sequence Description 252 ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 253 ------ inclusion threshold ------ 254 0.017 20.1 0.6 0.03 19.3 0.6 1.3 1 KYH38259.1 alanine acetyltransferase [Candidatus Bathyar 255 0.13 17.3 0.7 0.27 16.3 0.1 1.7 2 WP_054299021.1 ribosomal-protein-alanine N-acetyltransferase 256 0.14 17.3 0.1 0.23 16.5 0.1 1.3 1 WP_054584921.1 hypothetical protein [Halolamina pelagica]KP 257 0.18 16.9 0.7 0.35 15.9 0.7 1.5 1 WP_052883773.1 hypothetical protein [Thermofilum sp. 1807-2] 258 0.39 15.8 0.0 1.3e+02 7.7 0.0 2.5 2 KYK22897.1 hypothetical protein AYK24_08245 [Thermoplasm 259 0.41 15.7 0.2 26 9.9 0.0 3.2 3 AIF02201.1 GTPase domain-containing protein [uncultured 260 0.48 15.5 0.7 1.1e+03 4.8 0.1 3.9 4 WP_062399658.1 hypothetical protein [Methanogenium cariaci] 261 0.48 15.5 0.0 51 9.0 0.0 2.5 2 KYK32494.1 hypothetical protein AYK19_02995 [Thermoplasm 262 0.69 15.0 0.1 9.8 11.3 0.0 2.5 2 KUO39566.1 hypothetical protein APZ16_01915 [Hadesarchae 263 0.9 14.6 0.1 1.7 13.7 0.1 1.4 1 OGD45671.1 hypothetical protein A3K79_06915 [Candidatus 264 265 266Domain annotation for each sequence (and alignments): 267>> KYH38259.1 alanine acetyltransferase [Candidatus Bathyarchaeota archaeon B23] 268 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc 269 --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 270 1 ? 19.3 0.6 4.4e-07 0.03 5 27 .. 49 71 .. 47 75 .. 0.91 271 272 Alignments for each domain: 273 == domain 1 score: 19.3 bits; conditional E-value: 4.4e-07 274 infile_sto 5 aDGeivGfvwGtpgganeGkviG 27 275 +DG++vG+v+G+ +ga +G vi 276 KYH38259.1 49 VDGRVVGYVMGEMEGAKVGHVIN 71 277 7******************9996 PP 278 279>> WP_054299021.1 ribosomal-protein-alanine N-acetyltransferase RimI [Methanosarcina flavescens]KPL45943.1 ribosomal-p 280 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc 281 --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 282 1 ? 16.3 0.1 3.9e-06 0.27 4 25 .. 44 65 .. 43 71 .. 0.87 283 2 ? -2.3 0.0 2.6 1.8e+05 4 9 .. 132 137 .. 130 139 .. 0.54 284 285 Alignments for each domain: 286 == domain 1 score: 16.3 bits; conditional E-value: 3.9e-06 287 infile_sto 4 eaDGeivGfvwGtpgganeGkv 25 288 e DG++vG+v G+ +neG + 289 WP_054299021.1 44 EQDGKVVGYVVGYRSAENEGHI 65 290 78******************76 PP 291 292 == domain 2 score: -2.3 bits; conditional E-value: 2.6 293 infile_sto 4 eaDGei 9 294 ++DG + 295 WP_054299021.1 132 GEDGMV 137 296 555554 PP 297 298>> WP_054584921.1 hypothetical protein [Halolamina pelagica]KPN29154.1 hypothetical protein SY89_03388 [Halolamina pel 299 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc 300 --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 301 1 ? 16.5 0.1 3.3e-06 0.23 14 37 .. 14 38 .. 10 42 .. 0.86 302 303 Alignments for each domain: 304 == domain 1 score: 16.5 bits; conditional E-value: 3.3e-06 305 infile_sto 14 wGtpgganeGkviGfevrlEdGs.e 37 306 +G+ +a+ G ++G +vr+EdG+ 307 WP_054584921.1 14 EGKHVLAPDGEMVGEVVRTEDGTaF 38 308 799999****************944 PP 309 310>> WP_052883773.1 hypothetical protein [Thermofilum sp. 1807-2]AKG38376.1 hypothetical protein MA03_02555 [Thermofilum 311 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc 312 --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 313 1 ? 15.9 0.7 5.2e-06 0.35 15 43 .. 290 321 .. 279 323 .. 0.74 314 315 Alignments for each domain: 316 == domain 1 score: 15.9 bits; conditional E-value: 5.2e-06 317 infile_sto 15 GtpgganeG..kviGf.evrlEdGsevnasGi 43 318 G+ g++e+ + iG+ +vrl dG+ev+++Gi 319 WP_052883773.1 290 GEVVGEFENsfRSIGYlTVRLADGREVTVGGI 321 320 4444555552245******************9 PP 321 322>> KYK22897.1 hypothetical protein AYK24_08245 [Thermoplasmatales archaeon SG8-52-4] 323 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc 324 --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 325 1 ? 5.4 0.0 0.01 7e+02 19 37 .. 94 112 .. 90 114 .. 0.88 326 2 ? 7.7 0.0 0.002 1.3e+02 5 26 .. 185 206 .. 178 209 .. 0.92 327 328 Alignments for each domain: 329 == domain 1 score: 5.4 bits; conditional E-value: 0.01 330 infile_sto 19 ganeGkviGf.evrlEdGse 37 331 an G viG+ + r+ dG + 332 KYK22897.1 94 HANNG-VIGSkSWRFHDGKT 112 333 5999*.***********976 PP 334 335 == domain 2 score: 7.7 bits; conditional E-value: 0.002 336 infile_sto 5 aDGeivGfvwGtpgganeGkvi 26 337 DG+i+ + w + + ++ +kvi 338 KYK22897.1 185 PDGKIISYKWSYHDVKTPNKVI 206 339 6******************998 PP 340 341>> AIF02201.1 GTPase domain-containing protein [uncultured marine group II/III euryarchaeote KM3_155_E06] 342 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc 343 --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 344 1 ? 1.9 0.1 0.13 8.7e+03 2 15 .. 71 84 .. 70 89 .. 0.86 345 2 ? -2.9 0.0 4 2.7e+05 10 18 .. 295 303 .. 294 310 .. 0.82 346 3 ? 9.9 0.0 0.00038 26 11 39 .. 397 423 .. 397 426 .. 0.88 347 348 Alignments for each domain: 349 == domain 1 score: 1.9 bits; conditional E-value: 0.13 350 infile_sto 2 edeaDGeivGfvwG 15 351 +de+DG i+ + G 352 AIF02201.1 71 DDERDGSICQPNTG 84 353 89******998888 PP 354 355 == domain 2 score: -2.9 bits; conditional E-value: 4 356 infile_sto 10 vGfvwGtpg 18 357 + +v+G+p+ 358 AIF02201.1 295 IAYVPGEPE 303 359 689999976 PP 360 361 == domain 3 score: 9.9 bits; conditional E-value: 0.00038 362 infile_sto 11 GfvwGtpgganeGkviGfevrlEdGsevn 39 363 Gf ++t +a +++iG e +lEdG +v 364 AIF02201.1 397 GFIRAT--DARTNRIIGAEHELEDGAVVK 423 365 677788..8999***************97 PP 366 367>> WP_062399658.1 hypothetical protein [Methanogenium cariaci] 368 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc 369 --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 370 1 ? -1.3 0.0 1.3 8.7e+04 31 38 .. 87 94 .. 86 97 .. 0.74 371 2 ? 2.1 0.0 0.11 7.4e+03 31 43 .. 125 137 .. 124 139 .. 0.85 372 3 ? 3.7 0.0 0.035 2.4e+03 31 45 .. 165 179 .. 164 180 .. 0.83 373 4 ? 4.8 0.1 0.016 1.1e+03 31 43 .. 205 217 .. 202 220 .. 0.82 374 375 Alignments for each domain: 376 == domain 1 score: -1.3 bits; conditional E-value: 1.3 377 infile_sto 31 rlEdGsev 38 378 ++EdGs++ 379 WP_062399658.1 87 LTEDGSIF 94 380 57999876 PP 381 382 == domain 2 score: 2.1 bits; conditional E-value: 0.11 383 infile_sto 31 rlEdGsevnasGi 43 384 ++E+Gs+v+ +G 385 WP_062399658.1 125 LTENGSIVAWGGW 137 386 68******99985 PP 387 388 == domain 3 score: 3.7 bits; conditional E-value: 0.035 389 infile_sto 31 rlEdGsevnasGisk 45 390 ++EdG++v+ +G ++ 391 WP_062399658.1 165 LTEDGMIVAWGGWDR 179 392 68******9999765 PP 393 394 == domain 4 score: 4.8 bits; conditional E-value: 0.016 395 infile_sto 31 rlEdGsevnasGi 43 396 ++EdG++v+ +G 397 WP_062399658.1 205 LTEDGTIVAWGGG 217 398 6899999999986 PP 399 400>> KYK32494.1 hypothetical protein AYK19_02995 [Thermoplasmatales archaeon DG-70-1] 401 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc 402 --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 403 1 ? 3.9 0.0 0.03 2e+03 8 23 .. 24 39 .. 24 41 .. 0.91 404 2 ? 9.0 0.0 0.00075 51 14 39 .. 228 251 .. 225 255 .. 0.84 405 406 Alignments for each domain: 407 == domain 1 score: 3.9 bits; conditional E-value: 0.03 408 infile_sto 8 eivGfvwGtpgganeG 23 409 +i+++ Gt+g+an + 410 KYK32494.1 24 RIIDVKTGTAGKANQD 39 411 69************97 PP 412 413 == domain 2 score: 9.0 bits; conditional E-value: 0.00075 414 infile_sto 14 wGtpgganeGkviGf.evrlEdGsevn 39 415 +G+ + +e+ vi + +++ E+G++v+ 416 KYK32494.1 228 RGK--DTFEK-VIKSiSLLIENGMKVR 251 417 688..45999.**************97 PP 418 419>> KUO39566.1 hypothetical protein APZ16_01915 [Hadesarchaea archaeon YNP_45] 420 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc 421 --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 422 1 ? 0.6 0.0 0.33 2.2e+04 32 44 .. 36 48 .. 33 50 .. 0.86 423 2 ? 11.3 0.0 0.00014 9.8 28 44 .. 163 179 .. 155 181 .. 0.88 424 425 Alignments for each domain: 426 == domain 1 score: 0.6 bits; conditional E-value: 0.33 427 infile_sto 32 lEdGsevnasGis 44 428 EdG +++a+ ++ 429 KUO39566.1 36 SEDGPVTAAGAFT 48 430 59********998 PP 431 432 == domain 2 score: 11.3 bits; conditional E-value: 0.00014 433 infile_sto 28 fevrlEdGsevnasGis 44 434 +++lEdG+ vn++Gi 435 KUO39566.1 163 VQIELEDGTPVNIGGIA 179 436 589************96 PP 437 438>> OGD45671.1 hypothetical protein A3K79_06915 [Candidatus Bathyarchaeota archaeon RBG_13_46_16b] 439 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc 440 --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 441 1 ? 13.7 0.1 2.6e-05 1.7 4 16 .. 65 77 .. 64 81 .. 0.89 442 443 Alignments for each domain: 444 == domain 1 score: 13.7 bits; conditional E-value: 2.6e-05 445 infile_sto 4 eaDGeivGfvwGt 16 446 eaDGei+G+v+G+ 447 OGD45671.1 65 EADGEIIGYVQGE 77 448 89**********8 PP 449 450 451 452Internal pipeline statistics summary: 453------------------------------------- 454Query model(s): 1 (46 nodes) 455Target sequences: 679520 (173599232 residues searched) 456Passed MSV filter: 26202 (0.0385596); expected 13590.4 (0.02) 457Passed bias filter: 18222 (0.026816); expected 13590.4 (0.02) 458Passed Vit filter: 1432 (0.00210737); expected 679.5 (0.001) 459Passed Fwd filter: 51 (7.5053e-05); expected 6.8 (1e-05) 460Initial search space (Z): 679520 [actual number of targets] 461Domain search space (domZ): 10 [number of targets reported over threshold] 462# CPU time: 5.29u 0.50s 00:00:05.79 Elapsed: 00:00:05.83 463# Mc/sec: 1369.74 464// 465[ok] 466