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/dports/biology/subread/subread-2.0.2-source/src/
H A Dsambam-file.c1609 int i, fldi = 0, start_pos = -1; in duplicate_TAB_record_field() local
1615 if(fldi == fno) start_pos = i+1; in duplicate_TAB_record_field()
1620 start_pos = rline[0]>0?0:-1; in duplicate_TAB_record_field()
1621 if(start_pos == 0) for(i=0;rline[i] && rline[i] != '\n' && rline[i] != '\t'; i++); in duplicate_TAB_record_field()
1632 if(start_pos<0 || end_pos <= start_pos) return NULL; in duplicate_TAB_record_field()
1633 char * ret = malloc(end_pos - start_pos +1); in duplicate_TAB_record_field()
1634 memcpy(ret, rline+start_pos, end_pos -start_pos); in duplicate_TAB_record_field()
1635 ret[end_pos -start_pos] = 0; in duplicate_TAB_record_field()
H A Dcore-junction.c1583 …r * rtext, int rlen, int start_coverage, int end_coverage, unsigned int start_pos, unsigned int en…
2058 …r * rtext, int rlen, int start_coverage, int end_coverage, unsigned int start_pos, unsigned int en… in find_donor_receptor() argument
2064 unsigned int search_in_chro_start = start_pos + indels_in_start + search_in_read_start; in find_donor_receptor()
2155 …unsigned int start_pos = start_vote->pos[ ii_array[start_element_i] ][ jj_array[start_element_i] … in find_path() local
2159 long long dist = start_pos; in find_path()
2168 if(start_pos < end_pos){ in find_path()
2170 …read_name, this_read_text, this_read_len, start_coverage, end_coverage, start_pos, end_pos, indels… in find_path()
/dports/biology/p5-transdecoder/TransDecoder-TransDecoder-v5.4.0/util/
H A Dstart_codon_refinement.pl225 my $start_pos = $lend;
228 $start_pos = length($transcript_seq) - $rend + 1;
233 my $start_index = $start_pos - 1; # zero based
/dports/benchmarks/phoronix-test-suite/phoronix-test-suite-10.6.1/pts-core/objects/phodevi/components/
H A Dphodevi_system.php1107 $start_pos = strpos($os, '.');
1109 $start_pos = strrpos(substr($os, 0, $start_pos), ' ');
1112 $os_version = substr($os, $start_pos + 1, $end_pos - $start_pos);
/dports/audio/vgmplay/vgmplay-0.40.9_2/chips/
H A Dnp_nes_fds.c294 UINT32 start_pos, end_pos, p;
297 start_pos = fds->phase[TMOD] >> 16;
305 for (p = start_pos; p < end_pos; ++p)
/dports/mail/thunderbird/thunderbird-91.8.0/toolkit/components/protobuf/src/google/protobuf/stubs/
H A Dstrutil.cc140 string::size_type start_pos = 0; in StringReplace() local
143 pos = s.find(oldsub, start_pos); in StringReplace()
147 res->append(s, start_pos, pos - start_pos); in StringReplace()
149 start_pos = pos + oldsub.size(); // start searching again after the "old" in StringReplace()
151 res->append(s, start_pos, s.length() - start_pos); in StringReplace()
/dports/mail/thunderbird/thunderbird-91.8.0/third_party/rust/regalloc/src/linear_scan/
H A Dassign_registers.rs721 let (start_pos, reg_class) = { in allocate_blocked_reg()
746 start_pos in allocate_blocked_reg()
759 next_use(&state.intervals.get(int_id), start_pos, &state.reg_uses) in allocate_blocked_reg()
834 if first_use == start_pos { in allocate_blocked_reg()
872 split_and_spill(state, int_id, start_pos); in allocate_blocked_reg()
/dports/mail/thunderbird/thunderbird-91.8.0/third_party/rust/fluent-syntax/src/parser/
H A Dcomment.rs72 let start_pos = self.ptr; in get_comment_line() localVariable
78 Ok(self.source.slice(start_pos..self.ptr)) in get_comment_line()
H A Dpattern.rs161 let start_pos = self.ptr; in get_text_slice() localVariable
170 start_pos, in get_text_slice()
179 start_pos, in get_text_slice()
187 start_pos, in get_text_slice()
203 start_pos, in get_text_slice()
/dports/mail/thunderbird/thunderbird-91.8.0/third_party/rust/minidump_writer_linux/src/
H A Dminidump_writer.rs91 let start_pos = self.last_position_written_to_file as usize; in write_to_file() localVariable
92 self.destination.write_all(&buffer.get_ref()[start_pos..])?; in write_to_file()
/dports/mail/thunderbird/thunderbird-91.8.0/toolkit/components/protobuf/src/google/protobuf/util/internal/
H A Dproto_writer.cc335 int start_pos = ow_->stream_->ByteCount(); in ProtoElement() local
340 SizeInfo info = {start_pos, -start_pos}; in ProtoElement()
/dports/mail/thunderbird/thunderbird-91.8.0/third_party/libwebrtc/webrtc/modules/audio_coding/codecs/ilbc/
H A Ddecode_residual.c46 size_t meml_gotten, diff, start_pos; in WebRtcIlbcfix_DecodeResidual() local
55 start_pos = (iLBC_encbits->startIdx-1)*SUBL; in WebRtcIlbcfix_DecodeResidual()
57 start_pos = (iLBC_encbits->startIdx-1)*SUBL + diff; in WebRtcIlbcfix_DecodeResidual()
64 &decresidual[start_pos], iLBCdec_inst->state_short_len in WebRtcIlbcfix_DecodeResidual()
72 WEBRTC_SPL_MEMCPY_W16(mem+CB_MEML-iLBCdec_inst->state_short_len, decresidual+start_pos, in WebRtcIlbcfix_DecodeResidual()
78 &decresidual[start_pos + iLBCdec_inst->state_short_len], in WebRtcIlbcfix_DecodeResidual()
90 decresidual+start_pos, meml_gotten); in WebRtcIlbcfix_DecodeResidual()
103 WebRtcSpl_MemCpyReversedOrder(&decresidual[start_pos-1], in WebRtcIlbcfix_DecodeResidual()
H A Ddefines.h166 int16_t start_pos; member
H A Dencode.c53 size_t diff, start_pos; in WebRtcIlbcfix_EncodeImpl() local
92 start_pos = iLBCenc_inst->start_pos; in WebRtcIlbcfix_EncodeImpl()
174 start_pos = (iLBCbits_inst->startIdx-1)*SUBL; in WebRtcIlbcfix_EncodeImpl()
177 start_pos = (iLBCbits_inst->startIdx-1)*SUBL + diff; in WebRtcIlbcfix_EncodeImpl()
182 WebRtcIlbcfix_StateSearch(iLBCenc_inst, iLBCbits_inst, &residual[start_pos], in WebRtcIlbcfix_EncodeImpl()
188 &decresidual[start_pos], iLBCenc_inst->state_short_len in WebRtcIlbcfix_EncodeImpl()
199 decresidual+start_pos, iLBCenc_inst->state_short_len); in WebRtcIlbcfix_EncodeImpl()
204 &residual[start_pos+iLBCenc_inst->state_short_len], in WebRtcIlbcfix_EncodeImpl()
211 &decresidual[start_pos + iLBCenc_inst->state_short_len], in WebRtcIlbcfix_EncodeImpl()
243 WebRtcSpl_MemCpyReversedOrder(&decresidual[start_pos-1], reverseDecresidual, diff); in WebRtcIlbcfix_EncodeImpl()
[all …]
/dports/mail/thunderbird/thunderbird-91.8.0/third_party/libwebrtc/webrtc/modules/audio_coding/neteq/test/delay_tool/
H A Dparse_delay_file.m29 start_pos = ftell(fid); variable
38 fseek(fid, start_pos, 'bof');
/dports/mail/thunderbird/thunderbird-91.8.0/third_party/libwebrtc/webrtc/rtc_base/
H A Dstringencode.cc606 size_t start_pos = remain_source.find(start_mark); in tokenize() local
607 if (std::string::npos == start_pos) break; in tokenize()
609 if (start_pos > 0) { in tokenize()
610 pre_mark = remain_source.substr(0, start_pos - 1); in tokenize()
613 ++start_pos; in tokenize()
614 size_t end_pos = remain_source.find(end_mark, start_pos); in tokenize()
620 fields->push_back(remain_source.substr(start_pos, end_pos - start_pos)); in tokenize()
/dports/mail/thunderbird/thunderbird-91.8.0/third_party/libwebrtc/webrtc/system_wrappers/source/
H A Daligned_malloc.cc28 uintptr_t GetRightAlign(uintptr_t start_pos, size_t alignment) { in GetRightAlign() argument
31 return (start_pos + alignment - 1) & ~(alignment - 1); in GetRightAlign()
49 uintptr_t start_pos = reinterpret_cast<uintptr_t>(pointer); in GetRightAlign() local
50 return reinterpret_cast<void*>(GetRightAlign(start_pos, alignment)); in GetRightAlign()
/dports/mail/thunderbird/thunderbird-91.8.0/third_party/jpeg-xl/lib/jxl/jpeg/
H A Denc_jpeg_data_reader.cc53 if (start_pos + marker_len != *pos) { \
55 marker_len, (*pos - start_pos)); \
88 const size_t start_pos = *pos; in ProcessSOF() local
163 const size_t start_pos = *pos; in ProcessSOS() local
256 const size_t start_pos = *pos; in ProcessDHT() local
264 while (*pos < start_pos + marker_len) { in ProcessDHT()
329 huff.is_last = (*pos == start_pos + marker_len); in ProcessDHT()
343 const size_t start_pos = *pos; in ProcessDQT() local
351 while (*pos < start_pos + marker_len && jpg->quant.size() < kMaxQuantTables) { in ProcessDQT()
368 table.is_last = (*pos == start_pos + marker_len); in ProcessDQT()
[all …]
/dports/mail/thunderbird/thunderbird-91.8.0/third_party/aom/tools/
H A Dcpplint.py1343 (start_pos, num_open) = FindStartOfExpressionInLine(
1345 if start_pos > -1:
1346 return (line, linenum, start_pos)
1352 (start_pos, num_open) = FindStartOfExpressionInLine(
1354 if start_pos > -1:
1355 return (line, linenum, start_pos)
3180 start_pos = -1
3193 start_pos = len(matched.group(1))
3195 if not check_macro or start_pos < 0:
3201 clean_lines, linenum, start_pos)
[all …]
/dports/mail/thunderbird/thunderbird-91.8.0/third_party/python/ply/
H A DCHANGES265 start_pos = p.lexpos(3)
273 start_pos, end_pos = p.lexspan(3)
/dports/mail/thunderbird/thunderbird-91.8.0/third_party/aom/av1/encoder/
H A Dfirstpass.c2305 const FIRSTPASS_STATS *const start_pos = twopass->stats_in; local
2640 reset_fpf_position(twopass, start_pos);
2704 reset_fpf_position(twopass, start_pos);
2709 start_pos, twopass->stats_in_end, rc->baseline_gf_interval);
2769 const FIRSTPASS_STATS *start_pos = twopass->stats_in; local
2813 reset_fpf_position(twopass, start_pos);
/dports/mail/thunderbird/thunderbird-91.8.0/third_party/libwebrtc/webrtc/modules/rtp_rtcp/source/
H A Drtp_format_vp9_unittest.cc154 size_t start_pos, in CheckPayload() argument
157 for (size_t i = start_pos; i < end_pos; ++i) { in CheckPayload()
H A Drtp_format_vp8.cc262 void RtpPacketizerVp8::QueuePacket(size_t start_pos, in QueuePacket() argument
267 packet_info.payload_start_pos = start_pos; in QueuePacket()
H A Drtp_format_vp8.h89 void QueuePacket(size_t start_pos,
H A Drtp_format_vp9.cc155 void QueuePacket(size_t start_pos, in QueuePacket() argument
161 packet_info.payload_start_pos = start_pos; in QueuePacket()

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