| /dports/biology/stacks/stacks-2.4/src/ |
| H A D | write.cc | 32 write_fasta(ofstream *fh, RawRead *href, bool overhang) { in write_fasta()
60 write_fasta(gzFile *fh, RawRead *href, bool overhang) { in write_fasta()
115 write_fastq(ofstream *fh, RawRead *href, bool overhang) { in write_fastq()
150 write_fastq(gzFile *fh, RawRead *href, bool overhang) { in write_fastq()
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| H A D | clean.cc | 363 rev_complement(char *seq, int offset, bool overhang) in rev_complement()
406 reverse_qual(char *qual, int offset, bool overhang) in reverse_qual()
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| /dports/biology/ugene/ugene-40.1/src/plugins/enzymes/src/ |
| H A D | DNAFragment.cpp | 195 void DNAFragment::setOverhang(const QByteArray &qName, const QByteArray &overhang) { in setOverhang()
200 void DNAFragment::setLeftOverhang(const QByteArray &overhang) { in setLeftOverhang()
211 void DNAFragment::setRightOverhang(const QByteArray &overhang) { in setRightOverhang()
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| H A D | EditFragmentDialog.cpp | 237 …QByteArray overhang = dnaFragment.getSourceSequenceRegion(U2Region(leftOverhangStart, dnaFragment.… in resetLeftOverhang() local
267 …QByteArray overhang = dnaFragment.getSourceSequenceRegion(U2Region(rightCutPos, rightOverhangStart… in resetRightOverhang() local
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| H A D | DNAFragment.h | 49 QByteArray overhang; member
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| /dports/audio/ardour6/Ardour-6.8.0/gtk2_ardour/ |
| H A D | port_matrix_column_labels.h | 47 uint32_t overhang () const { in overhang() function
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| /dports/print/lyx/lyx-2.3.4.2/src/insets/ |
| H A D | InsetWrap.h | 36 Length overhang; variable
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| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/include/algo/blast/core/ |
| H A D | hspfilter_besthit.h | 99 double overhang; /**< overhang used in condition 1. */ member
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| /dports/biology/ncbi-toolkit/ncbi/algo/blast/core/ |
| H A D | hspfilter_besthit.h | 99 double overhang; /**< overhang used in condition 1. */ member
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/algo/blast/core/ |
| H A D | hspfilter_besthit.h | 99 double overhang; /**< overhang used in condition 1. */ member
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| /dports/x11-toolkits/irrlicht/irrlicht-1.8.5/tools/IrrFontTool/newFontTool/ |
| H A D | CFontTool.h | 44 s32 overhang; member
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| /dports/editors/e93/e93/xgui/ |
| H A D | fonts.c | 114 overhang; in LoadEditorFont() local
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| /dports/math/ogdf/OGDF/include/ogdf/orthogonal/internal/ |
| H A D | RoutingChannel.h | 70 ATYPE overhang() const { in overhang() function
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| /dports/x11-toolkits/irrlicht/irrlicht-1.8.5/source/Irrlicht/ |
| H A D | CGUIFont.h | 87 s32 overhang; member
|
| /dports/games/supertuxkart/SuperTuxKart-1.2-src/lib/irrlicht/source/Irrlicht/ |
| H A D | CGUIFont.h | 106 s32 overhang; member
|
| /dports/cad/PrusaSlicer/PrusaSlicer-version_2.3.3/tests/fff_print/ |
| H A D | test_data.hpp | 31 overhang, enumerator
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| /dports/security/pkcrack/pkcrack-1.2.2/src/ |
| H A D | stage1.c | 132 int j, k, l, overhang = 0, newKeys=0; in reduceKey2s() local
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| /dports/devel/hyperscan/hyperscan-5.4.0/src/rose/ |
| H A D | stream_long_lit.h | 162 size_t overhang = len - buf_len; in confirmLongLiteral() local
196 size_t overhang = hash_len - ci->len; in prepScanBuffer() local
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| /dports/cad/openroad/OpenROAD-2.0/src/OpenDB/src/db/ |
| H A D | dbTechViaLayerRule.cpp | 334 void dbTechViaLayerRule::setOverhang(int overhang) in setOverhang()
353 void dbTechViaLayerRule::setMetalOverhang(int overhang) in setMetalOverhang()
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| /dports/biology/canu/canu-2.2/src/overlapAlign/ |
| H A D | trimRead.C | 91 int32 overhang = 500; in trimRead() local
|
| /dports/biology/gatk/gatk-4.2.0.0/src/main/java/org/broadinstitute/hellbender/tools/walkers/rnaseq/ |
| H A D | OverhangFixingManager.java | 260 final int overhang = splice.loc.getStop() - read.getStart() + 1; in fixSplit() local
267 final int overhang = readLoc.getStop() - splice.loc.getStart() + 1; in fixSplit() local
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| /dports/devel/upp/upp/uppsrc/Draw/ |
| H A D | FontInt.h | 16 int overhang; member
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/blast/core/ |
| H A D | hspfilter_besthit.c | 240 Int4 i, qid, qlen, begin, end, lenA, lenB, scoreA, scoreB, overhang; in s_BlastHSPBestHitRun() local
361 Int4 i, qid, begin, end, lenA, lenB, scoreA, scoreB, overhang; in s_BlastHSPBestHitRun_RPS() local
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| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/algo/blast/core/ |
| H A D | hspfilter_besthit.c | 240 Int4 i, qid, qlen, begin, end, lenA, lenB, scoreA, scoreB, overhang; in s_BlastHSPBestHitRun() local
361 Int4 i, qid, begin, end, lenA, lenB, scoreA, scoreB, overhang; in s_BlastHSPBestHitRun_RPS() local
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| /dports/converters/wkhtmltopdf/qt-5db36ec/src/3rdparty/webkit/Source/WebCore/platform/ |
| H A D | ScrollbarThemeComposite.cpp | 265 float overhang = max(0.0f, max(overhangAtStart, overhangAtEnd)); in usedTotalSize() local
|