Searched refs:FastqPatternSource (Results 1 – 7 of 7) sorted by relevance
| /dports/biology/bowtie/bowtie-1.3.1/ |
| H A D | pat.h | 672 class FastqPatternSource : public CFilePatternSource {
674 FastqPatternSource(
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| H A D | pat.cpp | 797 pair<bool, int> FastqPatternSource::nextBatchFromFile( in nextBatchFromFile()
862 bool FastqPatternSource::parse(Read &r, Read& rb, TReadId rdid) const { in parse()
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| H A D | ebwt_search.cpp | 2935 return new FastqPatternSource (reads, trim3, trim5,
2939 return new FastqPatternSource (reads, trim3, trim5,
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| /dports/biology/bowtie2/bowtie2-2.4.4/ |
| H A D | pat.h | 764 class FastqPatternSource : public CFilePatternSource {
768 FastqPatternSource( in FastqPatternSource() function
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| H A D | pat.cpp | 97 case FASTQ: return new FastqPatternSource(qs, p, p.interleaved); in patsrcFromStrings()
1015 pair<bool, int> FastqPatternSource::nextBatchFromFile( in nextBatchFromFile()
1084 bool FastqPatternSource::parse(Read &r, Read& rb, TReadId rdid) const { in parse()
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| /dports/biology/hisat2/hisat2-2.2.1/ |
| H A D | pat.h | 1360 class FastqPatternSource : public BufferedFilePatternSource {
1364 FastqPatternSource(const EList<string>& infiles, const PatternParams& p) : in FastqPatternSource() function
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| H A D | pat.cpp | 57 case FASTQ: return new FastqPatternSource(qs, p); in patsrcFromStrings()
852 bool FastqPatternSource::read(
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