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Searched refs:GTA (Results 1 – 25 of 881) sorted by relevance

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/dports/biology/emboss/EMBOSS-6.6.0/test/data/
H A Ddna.fitch2 ACG TAC GTA CGT ACG TAC GTA CGT ACG TAC GTA CGT ACG TAC GTA CGT ACG TAC GTA CGT
3 ACG TAC GTA CGT ACG TAC GTA CGT ACG TAC GTA CGT ACG TAC GTA CGT ACG TAC GTA CGT
5 ACG TAC GTA CGT ACG TAC GT. ... ACG TAC GTA CGT ACG TAC GTA CGT ACG TAC GTA CGT
6 ACG TAC GTA CGT ACG TAC GTA CGT ACG TAC GTA CGT ACG TAC GTA CGT TGC AAC GTA CGT
8 ACG TAC GTA CGT ACG TAC GTA CGT ACG TAC GTA CGT ACG TCG TAC GTA CGT ACG TAC GTA
9 CGT ACG TAC GTA CGT ACG TAA CGT ACG TAC GTA CGT ACG TAC GTA CGT ACG TAC GTA CGT
/dports/math/octave-forge-gsl/gsl-2.1.1/src/
H A Dbootstrap135 GTA="./generate_array_template.sh"
138 ${GTA} int+ double "arg1+1" 1 LD_D_array.template.cc
139 ${GTA} int+ double "arg1+1" 2 LD_DD_array.template.cc
140 ${GTA} int+ double double "arg1+1" 1 LDD_D_array.template.cc
141 ${GTA} int+ double double "arg1+1" 2 LDD_DD_array.template.cc
144 ${GTA} int+ int+ double "arg2-arg1+1" 1 LLD_D_array.template.cc
145 ${GTA} int+ int+ double "arg2-arg1+1" 2 LLD_DD_array.template.cc
148 ${GTA} int+ int+ double "arg1+1" 1 LID_D_array.template.cc
149 ${GTA} int+ int+ double "arg1+1" 2 LID_DD_array.template.cc
152 ${GTA} legnorm size_t double double "arg2" 1 NSDD_D_array.template.cc
[all …]
/dports/biology/paml/paml4.9j/examples/MouseLemurs/
H A DMouseLemurs.nuc18GTA CAA TTC GGA TTT CAA GAC GCT GCC TCC CCT ATT ATA GAA GAA TTA TTA TAC TTC CAT GAC CAC ACC CTT AT…
19GTA CAA TTC GGA TTT CAA GAC GCC GCC TCA CCT ATT ATA GAA GAA CTA CTA TAC TTT CAT GAC CAC ACT CTC AT…
22GTA TTC CTA ATT AGT TCT CTA GTT CTC TAT ATC ATC TCT CTA ATA CTC ACC ACC AAA CTC ATA CAC ACC AGC AC…
25GTA GAA ACA GTA TGA ACA ATC CTA CCT GCA GCA ATC CTC ATT CTT ATT GCT CTT CCA TCA TTA CGC ATT CTG TA…
30GTA TTT TTA ATT AGC TCA TTA GTC CTA TAC ATT ATT TCC CTT ATG CTT ACC ACG GAA CTT ACT CAT ACA AGC AC…
31GTA TTC TTA ATT AGC TCA TTA GTT CTA TAT ATC ATT TCC CTC ATG CTT ACC ACG GAA CTC ACC CAT ACA AGC AC…
32GTA TTT TTA ATT AGT TCA TTA GTC CTA TAT ATC ATT TCC CTT ATG CTT ACC ACG GAA CTC ACT CAT ACA AGC AC…
34GTA TTT TTA ATT AGC TCA TTA GTT CTT TAT ATC ATT TCC CTC ATG CTT ACC ACA GAA CTC ACC CAT ACA AGC AC…
35GTA TTT TTA ATT AGC TCA TTA GTT CTT TAT ATT ATT TCC CTT ATA CTT ACC ACG GAA CTC ACT CAT ACA AGC AC…
36GTA TTT TTA ATT AGC TCA TTA GTT CTA TAT ATC ATT TCC CTT ATG CTT ACC ACA GAA CTC ACT CAT ACA AGC AC…
[all …]
/dports/biology/p5-Bio-NEXUS/Bio-NEXUS-0.78/t/data/compliant/
H A DOmland-Ravens.nex9 California.166 TAT CTC ACA TAA CAA GTA ATG CAA GAC CTA ACC AAA CTC AAA TAT CAT
10 California.168 TAT CTC ACA TAA CAA GTA ATG CAA GAC CTA ACC AAA CTC AAA TAT CAT
11 California.169 TAT CTC ACA TAA CAA GTA ATG CAA GAC CTA ACC AAA CTC AAA TAT CAT
12 California.170 TAT CTC ACA TAA CAA GTA ATG CAA GAC CTA ACC AAA CTC AAA TAT CAT
13 California.171 TAT CTC ACA TAA CAA GTA ATG CAA GAC CTA ACC AAA CTC AAA TAT CAT
14 California.172 TAT CTC ACA TAA CAA GTA ATG CAA GAC CTA ACC AAA CTC AAA TAT CAT
15 California.175 TAT CTC ACA TAA CAA GTA ATG CAA GAC CTA ACC AAA CTC AAA TAT CAT
23 California.881 TAT CTC ACA TAA CAA GTA ATG CAA GAC CTA ACC AAA CTC AAA TAT CAT
254 C.brachyrhynchosDS.CR.111099 TCC CAG GTA CAA CAA ACC CAA GTG ATC CTA CCA ACA GTA CAA GAC AAG
255 C.hawaiiensis.Kol.CR.txt.110999 CCA CAG GTA CAA TAA ACC CAG GTA ATC CTA CCA ACC ACA CAA GAC AAG
[all …]
/dports/biology/p5-BioPerl/BioPerl-1.7.7/t/data/
H A Dcodeml45b.mlc3GTA ACT CCT CAA CCT GGA GTT CCG CCC GAG GAA GCA GGG GCC GCA GTA GCT GCT GAA TCT TCT ACT GGT ACA TG…
4GTA ACT CCT CAA CCT GGA GTT CCG CCC GAG GAA GCA GGG GCC GCA GTA GCT GCT GAA TCT TCT ACT GGT ACA TG…
5GTA ACT CCT CAA CCT GGA GTT CCG CCC GAG GAA GCA GGG GCC GCA GTA GCT GCT GAA TCT TCT ACT GGT ACA TG…
6GTA ACT CCT CAA CCT GGA GTT CCG CCC GAG GAA GCA GGG GCC GCA GTA GCT GCT GAA TCT TCT ACT GGT ACA TG…
7GTA ACT CCT CAA CCT GGA GTT CCG CCC GAG GAA GCA GGG GCC GCA GTA GCT GCT GAA TCT TCT ACT GGT ACA TG…
9GTA ACT CCT CAA CCT GGA GTT CCG CCC GAG GAA GCA GGG GCC GCA GTA GCT GCT GAA TCT TCT ACT GGT ACA TG…
10GTA ACT CCT CAA CCT GGA GTT CCG CCC GAG GAA GCA GGG GCC GCA GTA GCT GCT GAA TCT TCT ACT GGT ACA TG…
11GTA ACT CCT CAA CCT GGA GTT CCG CCC GAG GAA GCA GGG GCC GCA GTA GCT GCT GAA TCT TCT ACT GGT ACA TG…
61GTA 13 13 12 13 13 12 | GCA 15 15 16 16 16 16 | Glu GAA 24 24 25 24 24 25 | GGA 13 13 13 1…
83 GTA 13 13 13 | GCA 15 16 16 | Glu GAA 24 24 24 | GGA 13 13 13
[all …]
/dports/biology/py-biopython/biopython-1.79/Tests/PAML/Results/yn00/
H A Dyn00_dottednum-4_9i.out3GTA CAA TGT ACA CAT GGA ATT AAG CCA GTG GTA CCA ACT CAA CCA CTG TTA AAT GGT AGC CTA GCA AAA GAG AA…
4GTA CAA TGT ACA CAT GGA ATT AAG CCA GTG GTA CCA ACT CAA CCA CTG TTA AAT GGT AGC CTA GCA AAA GAG AA…
5GTA CAA TAT ACA CAT GGA ATT AAG CCA GTG GTA CCA ACT CAA CCA CTG TTA AAT GGT AGC CTA GCA AAA GAG AA…
6GTA CAA TGT ACA TAT GGA ATT AAG CCA GTA GTA TCA ACT CAA CCA CTG TTA AGT GGT AGC CTA GCA GAA GAG GA…
7GTA CAA TGT ACA CAT GGA ATT AAG CCA GTG GTA TCA ACT CAA CCA CTG TTA AAT GGT AGC CTA GCA GAA GAG GA…
8GTA CAA TGT ACA TAT GGA ATT AAG CCA GTA GTA TCA ACT CAA CCA CTG TTA AAT GGT AGC CTA GTA GAA GAG GA…
9GTA CAA TGT ACA TAT GGA ATT AAG CCA GTA GTA TCA ACT CAA CCA CTG TTA AAT GGT AGC CTA GCA GAA GAG GA…
18 …AT CCA CCA CCC CCT CTA CTG CTT GAA GAC GAG GCA GCA GCG GCT GGA GGC GGG GGT GTA GTC GTG GTG GTT TAT…
97GTA 6 6 6 7 6 8 | GCA 4 4 4 4 4 3 | Glu GAA 6 6 6 7 7 8 | …
119 GTA 7 | GCA 5 | Glu GAA 7 | GGA 7
[all …]
H A Dyn00_long-4_8.out3GTA CAA TGT ACA CAT GGA ATT AAG CCA GTG GTA CCA ACT CAA CCA CTG TTA AAT GGT AGC CTA GCA AAA GAG AA…
4GTA CAA TGT ACA CAT GGA ATT AAG CCA GTG GTA CCA ACT CAA CCA CTG TTA AAT GGT AGC CTA GCA AAA GAG AA…
5GTA CAA TAT ACA CAT GGA ATT AAG CCA GTG GTA CCA ACT CAA CCA CTG TTA AAT GGT AGC CTA GCA AAA GAG AA…
6GTA CAA TGT ACA TAT GGA ATT AAG CCA GTA GTA TCA ACT CAA CCA CTG TTA AGT GGT AGC CTA GCA GAA GAG GA…
7GTA CAA TGT ACA CAT GGA ATT AAG CCA GTG GTA TCA ACT CAA CCA CTG TTA AAT GGT AGC CTA GCA GAA GAG GA…
8GTA CAA TGT ACA TAT GGA ATT AAG CCA GTA GTA TCA ACT CAA CCA CTG TTA AAT GGT AGC CTA GTA GAA GAG GA…
9GTA CAA TGT ACA TAT GGA ATT AAG CCA GTA GTA TCA ACT CAA CCA CTG TTA AAT GGT AGC CTA GCA GAA GAG GA…
18 …AT CCA CCA CCC CCT CTA CTG CTT GAA GAC GAG GCA GCA GCG GCT GGA GGC GGG GGT GTA GTC GTG GTG GTT TAT…
97GTA 6 6 6 7 6 8 | GCA 4 4 4 4 4 3 | Glu GAA 6 6 6 7 7 8 | …
119 GTA 7 | GCA 5 | Glu GAA 7 | GGA 7
[all …]
H A Dyn00-4_4.out3GTA ATC AAT ATT GAG GAC CTG ACA GAA AAG GAC AAA TTG AAG ATG GAA GTT GAC CAG CTC AAG AAA GAA GTG AC…
4GTA ATC AAT ATT GAG GAC CTG ACA GAA AAG GAC AAA TTG AAG ATG GAA GTT GAC CAG CTC AAG AAA GAA GTG AC…
5GTA ATC AAT ATT GAG GAC CTG ACA GAA AAG GAC AAA TTG AAG ATG GAA GTT GAC CAG CTC AAG AAA GAA GTG AC…
6GTA ATC AAT ATT GAG GAC CTG ACA GAA AAG GAC AAA TTG AAG ATG GAA GTT GAC CAG CTC AAG AAA GAA GTG AC…
7GTA ATC AAT ATT GAG GAC CTG ACA GAA AAG GAC AAA TTG AAG ATG GAA GTT GAC CAG CTC AAG AAA GAA GTG AC…
16 …AT ACA AGA ATC ATG ATT CAG CCA CCC CGA CTA CTC CTG GAA GAC GAG GAT GGA GGC GTA GTG GTT GTT GTT TAC…
81 GTA 3 3 3 3 4 | GCA 0 0 0 0 0 | Glu GAA 8 8 8 8 8 | GGA 1 1 1 1 1
105 GTA 16 | GCA 0 | Glu GAA 40 | GGA 5
H A Dyn00-4_4c.out3GTA ATC AAT ATT GAG GAC CTG ACA GAA AAG GAC AAA TTG AAG ATG GAA GTT GAC CAG CTC AAG AAA GAA GTG AC…
4GTA ATC AAT ATT GAG GAC CTG ACA GAA AAG GAC AAA TTG AAG ATG GAA GTT GAC CAG CTC AAG AAA GAA GTG AC…
5GTA ATC AAT ATT GAG GAC CTG ACA GAA AAG GAC AAA TTG AAG ATG GAA GTT GAC CAG CTC AAG AAA GAA GTG AC…
6GTA ATC AAT ATT GAG GAC CTG ACA GAA AAG GAC AAA TTG AAG ATG GAA GTT GAC CAG CTC AAG AAA GAA GTG AC…
7GTA ATC AAT ATT GAG GAC CTG ACA GAA AAG GAC AAA TTG AAG ATG GAA GTT GAC CAG CTC AAG AAA GAA GTG AC…
16 …AT ACA AGA ATC ATG ATT CAG CCA CCC CGA CTA CTC CTG GAA GAC GAG GAT GGA GGC GTA GTG GTT GTT GTT TAC…
81 GTA 3 3 3 3 4 | GCA 0 0 0 0 0 | Glu GAA 8 8 8 8 8 | GGA 1 1 1 1 1
105 GTA 16 | GCA 0 | Glu GAA 40 | GGA 5
H A Dyn00-4_5.out3GTA ATC AAT ATT GAG GAC CTG ACA GAA AAG GAC AAA TTG AAG ATG GAA GTT GAC CAG CTC AAG AAA GAA GTG AC…
4GTA ATC AAT ATT GAG GAC CTG ACA GAA AAG GAC AAA TTG AAG ATG GAA GTT GAC CAG CTC AAG AAA GAA GTG AC…
5GTA ATC AAT ATT GAG GAC CTG ACA GAA AAG GAC AAA TTG AAG ATG GAA GTT GAC CAG CTC AAG AAA GAA GTG AC…
6GTA ATC AAT ATT GAG GAC CTG ACA GAA AAG GAC AAA TTG AAG ATG GAA GTT GAC CAG CTC AAG AAA GAA GTG AC…
7GTA ATC AAT ATT GAG GAC CTG ACA GAA AAG GAC AAA TTG AAG ATG GAA GTT GAC CAG CTC AAG AAA GAA GTG AC…
16 …AT ACA AGA ATC ATG ATT CAG CCA CCC CGA CTA CTC CTG GAA GAC GAG GAT GGA GGC GTA GTG GTT GTT GTT TAC…
81 GTA 3 3 3 3 4 | GCA 0 0 0 0 0 | Glu GAA 8 8 8 8 8 | GGA 1 1 1 1 1
105 GTA 16 | GCA 0 | Glu GAA 40 | GGA 5
H A Dyn00-4_6.out3GTA ATC AAT ATT GAG GAC CTG ACA GAA AAG GAC AAA TTG AAG ATG GAA GTT GAC CAG CTC AAG AAA GAA GTG AC…
4GTA ATC AAT ATT GAG GAC CTG ACA GAA AAG GAC AAA TTG AAG ATG GAA GTT GAC CAG CTC AAG AAA GAA GTG AC…
5GTA ATC AAT ATT GAG GAC CTG ACA GAA AAG GAC AAA TTG AAG ATG GAA GTT GAC CAG CTC AAG AAA GAA GTG AC…
6GTA ATC AAT ATT GAG GAC CTG ACA GAA AAG GAC AAA TTG AAG ATG GAA GTT GAC CAG CTC AAG AAA GAA GTG AC…
7GTA ATC AAT ATT GAG GAC CTG ACA GAA AAG GAC AAA TTG AAG ATG GAA GTT GAC CAG CTC AAG AAA GAA GTG AC…
16 …AT ACA AGA ATC ATG ATT CAG CCA CCC CGA CTA CTC CTG GAA GAC GAG GAT GGA GGC GTA GTG GTT GTT GTT TAC…
81 GTA 3 3 3 3 4 | GCA 0 0 0 0 0 | Glu GAA 8 8 8 8 8 | GGA 1 1 1 1 1
105 GTA 16 | GCA 0 | Glu GAA 40 | GGA 5
H A Dyn00-4_7.out3GTA ATC AAT ATT GAG GAC CTG ACA GAA AAG GAC AAA TTG AAG ATG GAA GTT GAC CAG CTC AAG AAA GAA GTG AC…
4GTA ATC AAT ATT GAG GAC CTG ACA GAA AAG GAC AAA TTG AAG ATG GAA GTT GAC CAG CTC AAG AAA GAA GTG AC…
5GTA ATC AAT ATT GAG GAC CTG ACA GAA AAG GAC AAA TTG AAG ATG GAA GTT GAC CAG CTC AAG AAA GAA GTG AC…
6GTA ATC AAT ATT GAG GAC CTG ACA GAA AAG GAC AAA TTG AAG ATG GAA GTT GAC CAG CTC AAG AAA GAA GTG AC…
7GTA ATC AAT ATT GAG GAC CTG ACA GAA AAG GAC AAA TTG AAG ATG GAA GTT GAC CAG CTC AAG AAA GAA GTG AC…
16 …AT ACA AGA ATC ATG ATT CAG CCA CCC CGA CTA CTC CTG GAA GAC GAG GAT GGA GGC GTA GTG GTT GTT GTT TAC…
81 GTA 3 3 3 3 4 | GCA 0 0 0 0 0 | Glu GAA 8 8 8 8 8 | GGA 1 1 1 1 1
105 GTA 16 | GCA 0 | Glu GAA 40 | GGA 5
H A Dyn00-4_8.out3GTA ATC AAT ATT GAG GAC CTG ACA GAA AAG GAC AAA TTG AAG ATG GAA GTT GAC CAG CTC AAG AAA GAA GTG AC…
4GTA ATC AAT ATT GAG GAC CTG ACA GAA AAG GAC AAA TTG AAG ATG GAA GTT GAC CAG CTC AAG AAA GAA GTG AC…
5GTA ATC AAT ATT GAG GAC CTG ACA GAA AAG GAC AAA TTG AAG ATG GAA GTT GAC CAG CTC AAG AAA GAA GTG AC…
6GTA ATC AAT ATT GAG GAC CTG ACA GAA AAG GAC AAA TTG AAG ATG GAA GTT GAC CAG CTC AAG AAA GAA GTG AC…
7GTA ATC AAT ATT GAG GAC CTG ACA GAA AAG GAC AAA TTG AAG ATG GAA GTT GAC CAG CTC AAG AAA GAA GTG AC…
16 …AT ACA AGA ATC ATG ATT CAG CCA CCC CGA CTA CTC CTG GAA GAC GAG GAT GGA GGC GTA GTG GTT GTT GTT TAC…
81GTA 3 3 3 3 4 | GCA 0 0 0 0 0 | Glu GAA 8 8 8 8 8 | GGA 1 …
105 GTA 16 | GCA 0 | Glu GAA 40 | GGA 5
H A Dyn00_dotted-4_9i.out3GTA ATC AAT ATT GAG GAC CTG ACA GAA AAG GAC AAA TTG AAG ATG GAA GTT GAC CAG CTC AAG AAA GAA GTG AC…
4GTA ATC AAT ATT GAG GAC CTG ACA GAA AAG GAC AAA TTG AAG ATG GAA GTT GAC CAG CTC AAG AAA GAA GTG AC…
5GTA ATC AAT ATT GAG GAC CTG ACA GAA AAG GAC AAA TTG AAG ATG GAA GTT GAC CAG CTC AAG AAA GAA GTG AC…
6GTA ATC AAT ATT GAG GAC CTG ACA GAA AAG GAC AAA TTG AAG ATG GAA GTT GAC CAG CTC AAG AAA GAA GTG AC…
7GTA ATC AAT ATT GAG GAC CTG ACA GAA AAG GAC AAA TTG AAG ATG GAA GTT GAC CAG CTC AAG AAA GAA GTG AC…
16 …AT ACA AGA ATC ATG ATT CAG CCA CCC CGA CTA CTC CTG GAA GAC GAG GAT GGA GGC GTA GTG GTT GTT GTT TAC…
81GTA 3 3 3 3 4 | GCA 0 0 0 0 0 | Glu GAA 8 8 8 8 8 | GGA 1 …
105 GTA 16 | GCA 0 | Glu GAA 40 | GGA 5
H A Dyn00-4_1.out3GTA ATC AAT ATT GAG GAC CTG ACA GAA AAG GAC AAA TTG AAG ATG GAA GTT GAC CAG CTC AAG AAA GAA GTG AC…
4GTA ATC AAT ATT GAG GAC CTG ACA GAA AAG GAC AAA TTG AAG ATG GAA GTT GAC CAG CTC AAG AAA GAA GTG AC…
5GTA ATC AAT ATT GAG GAC CTG ACA GAA AAG GAC AAA TTG AAG ATG GAA GTT GAC CAG CTC AAG AAA GAA GTG AC…
6GTA ATC AAT ATT GAG GAC CTG ACA GAA AAG GAC AAA TTG AAG ATG GAA GTT GAC CAG CTC AAG AAA GAA GTG AC…
7GTA ATC AAT ATT GAG GAC CTG ACA GAA AAG GAC AAA TTG AAG ATG GAA GTT GAC CAG CTC AAG AAA GAA GTG AC…
65 GTA 3 3 3 3 4 | GCA 0 0 0 0 0 | Glu GAA 8 8 8 8 8 | GGA 1 1 1 1 1
89 GTA 16 | GCA 0 | Glu GAA 40 | GGA 5
H A Dyn00-4_3.out3GTA ATC AAT ATT GAG GAC CTG ACA GAA AAG GAC AAA TTG AAG ATG GAA GTT GAC CAG CTC AAG AAA GAA GTG AC…
4GTA ATC AAT ATT GAG GAC CTG ACA GAA AAG GAC AAA TTG AAG ATG GAA GTT GAC CAG CTC AAG AAA GAA GTG AC…
5GTA ATC AAT ATT GAG GAC CTG ACA GAA AAG GAC AAA TTG AAG ATG GAA GTT GAC CAG CTC AAG AAA GAA GTG AC…
6GTA ATC AAT ATT GAG GAC CTG ACA GAA AAG GAC AAA TTG AAG ATG GAA GTT GAC CAG CTC AAG AAA GAA GTG AC…
7GTA ATC AAT ATT GAG GAC CTG ACA GAA AAG GAC AAA TTG AAG ATG GAA GTT GAC CAG CTC AAG AAA GAA GTG AC…
65 GTA 3 3 3 3 4 | GCA 0 0 0 0 0 | Glu GAA 8 8 8 8 8 | GGA 1 1 1 1 1
89 GTA 16 | GCA 0 | Glu GAA 40 | GGA 5
/dports/graphics/py-gdal/gdal-3.3.3/doc/source/drivers/raster/
H A Dgta.rst4 GTA - Generic Tagged Arrays
7 .. shortname:: GTA
11 GDAL can read and write GTA data files through
14 GTA is a file format that can store any kind of multidimensional array
28 - **COMPRESS=method** Set the GTA compression method: NONE (default) or
35 - `GTA home page <http://gta.nongnu.org>`__
/dports/graphics/p5-Geo-GDAL/gdal-3.3.3/doc/source/drivers/raster/
H A Dgta.rst4 GTA - Generic Tagged Arrays
7 .. shortname:: GTA
11 GDAL can read and write GTA data files through
14 GTA is a file format that can store any kind of multidimensional array
28 - **COMPRESS=method** Set the GTA compression method: NONE (default) or
35 - `GTA home page <http://gta.nongnu.org>`__
/dports/graphics/gdal/gdal-3.3.3/doc/source/drivers/raster/
H A Dgta.rst4 GTA - Generic Tagged Arrays
7 .. shortname:: GTA
11 GDAL can read and write GTA data files through
14 GTA is a file format that can store any kind of multidimensional array
28 - **COMPRESS=method** Set the GTA compression method: NONE (default) or
35 - `GTA home page <http://gta.nongnu.org>`__
/dports/biology/gatk/gatk-4.2.0.0/docs/
H A Dunphased.dot5 "TGA" -> "GAA" -> "AAA" -> "AAC" -> "ACG" -> "CGT" -> "GTA"
6 "AAA" -> "AAT" -> "ATG" -> "TGT" -> "GTA"
7 "GTA" -> "TAT" -> "ATT" -> "TTT" -> "TTG"
8 "GTA" -> "TAC" -> "ACT" -> "CTT" -> "TTG" -> "TGG"
/dports/biology/py-ete3/ete3-3.1.2/ete3/test/ete_evol_data/S_example/paml/fb/
H A Drst111GTA (V) GTA (V) GTA (V) GTG (V) : TTT(0.000) TTC(0.000) TTA(0.000) TTG(0.000) TCT(0.000) TCC(0.000…
201GTA (V) GTA (V) GTA (V) GTG (V) : TTT(0.000) TTC(0.000) TTA(0.000) TTG(0.000) TCT(0.000) TCC(0.000…
291GTA (V) GTA (V) GTA (V) GTG (V) : TTT(0.000) TTC(0.000) TTA(0.000) TTG(0.000) TCT(0.000) TCC(0.000…
381 …84 1 GTA (V) GTA (V) GTA (V) GTG (V) : GTG V 1.000 (V 1.000) GTA V 1.000 (V 1.000) GTA V 1…
409 84 GTG (V) 1.000 -> GTA (V) 1.000
472 …AG ACA CGG AGG AGA GCC ATG AGG TGC CGC CGC AGG TAC AGA CTG AGA CGT AGA AGA CCC TAT CAT ATT GTA TCT
473 …AG ACA CGG AGG AGA GCC ATG AGG TGT CGC CGC AGG TAC AGG CTG AGA CGT AGA AGC TGT TAC CAC ATT GTA TCT
474 …AG ACA CGG AGG AGA GCC ATG AGG TGC CGC CGC AGG TAC AGA CTG AGA CGT AAA AGA TGT TAC CAT ATT GTA TCT
477 …AG ACA CGG AGG AGA GCC ATG AGG TGT CGC CGC AGG TAC AGG CTG AGA CGT AGA AGA TGT TAC CAC ATT GTA TCT
581 84 GTG.GTA (S N: 1.000 2.000 Sd Nd: 1.0 0.0)
[all …]
/dports/biology/py-ete3/ete3-3.1.2/examples/evol/data/S_example/paml/fb/
H A Drst111GTA (V) GTA (V) GTA (V) GTG (V) : TTT(0.000) TTC(0.000) TTA(0.000) TTG(0.000) TCT(0.000) TCC(0.000…
201GTA (V) GTA (V) GTA (V) GTG (V) : TTT(0.000) TTC(0.000) TTA(0.000) TTG(0.000) TCT(0.000) TCC(0.000…
291GTA (V) GTA (V) GTA (V) GTG (V) : TTT(0.000) TTC(0.000) TTA(0.000) TTG(0.000) TCT(0.000) TCC(0.000…
381 …84 1 GTA (V) GTA (V) GTA (V) GTG (V) : GTG V 1.000 (V 1.000) GTA V 1.000 (V 1.000) GTA V 1…
409 84 GTG (V) 1.000 -> GTA (V) 1.000
472 …AG ACA CGG AGG AGA GCC ATG AGG TGC CGC CGC AGG TAC AGA CTG AGA CGT AGA AGA CCC TAT CAT ATT GTA TCT
473 …AG ACA CGG AGG AGA GCC ATG AGG TGT CGC CGC AGG TAC AGG CTG AGA CGT AGA AGC TGT TAC CAC ATT GTA TCT
474 …AG ACA CGG AGG AGA GCC ATG AGG TGC CGC CGC AGG TAC AGA CTG AGA CGT AAA AGA TGT TAC CAT ATT GTA TCT
477 …AG ACA CGG AGG AGA GCC ATG AGG TGT CGC CGC AGG TAC AGG CTG AGA CGT AGA AGA TGT TAC CAC ATT GTA TCT
581 84 GTG.GTA (S N: 1.000 2.000 Sd Nd: 1.0 0.0)
[all …]
/dports/biology/wise/wise2.4.1/wisecfg/
H A Dworm.gf55 AA-GTA-GTT 6.5
83 -A-GTA-GTT 2.42424
88 A--GTA-GTT 1.9697
96 T--GTA-GTT 1.63636
119 AA-GTA-G-- 0.555556
206 A--GTA-GTT 1.09756
347 -G-GTA-GTT 0.7
633 GTA 18214.000000
701 GTA 7376.000000
769 GTA 6705.000000
[all …]
/dports/biology/py-biopython/biopython-1.79/Tests/PAML/Results/codeml/
H A Dtree_regexp_versatility.out5GTA TAT AGG CAC TTT AAA GAC AAA AAG AAT CTG GTA CTG GAC GAA ACC GTT GCA TTT TTT GTT AGC GGT GAG GC…
6GTA CCT GGG ATA ATC AAA GGT AAG AAA TAC CCA GCT AAG AAT CAC AAC ATC AGG GTC AAG GAT ATT CTA TTG TC…
7GTA AAT ATT CCA AGA GCT TCT ATC TTA TAT GAT TTT AAG ACT GAA AAT TTA ACT CTA TTC TTA CCA AAT ATC GA…
8GTA ATG TGG AGT GGA ATG CCA ATG GGT ATC AAT GAA GCT TTG AAC ACC TTT GAT GTC GAT GAA GTC CTA TAT GC…
17 …GC GGC GGC GGC GGC GGG GGG GGT GGT GGT GGT GGT GGT GGT GGT GTA GTA GTA GTA GTA GTA GTA GTA GTA GTC…
18GTA GTT TTC TTG CAA CAG AGA ATT CAC CAC CAT GCA --- AAA AAA AAA ATG CAA CGT TTA --- ATA CAC CAT CA…
19GTA GTC GTG GTT GCA TTA GTT ATT GTT GTA GTT GTT TTA --- CTG GTT GTA GTT ACA ATC ATA ATC TTG TGC AT…
20GTA AGA AGA CGT AGA GGT AAA GCA TCG AAG AAA CGC AAG TCT ACT GGT ACT GTT ATC ATT ATT GTT ATT GTG GC…
82 GTA 9 5 4 5 | GCA 7 6 1 10 | Glu GAA 15 33 40 35 | GGA 9 4 4 10
131 GTA 23 | GCA 24 | Glu E GAA 123 | GGA 27
/dports/biology/py-biopython/biopython-1.79/Tests/PAML/Alignments/
H A DlysinYangSwanson2002.nuc7GTA AAC AAG GCT TTT GAA GTT GCA CTG AAG GTA CAG ATC ATT GCT GGA TTC GAT AGA ACG CTG GTC AAA TGG CT…
10GTA AAC AAG GCT TTT GAA ATT GCA CTG AAG GAA GAG ATC GTT GCT GGA TTC GAT AGA ACG CTG AAC AAA TGG CT…
11GTA AAC AAG GCT TTT GAA ATT GCA CTG AAG GAA GAG ATC GTT GCT GGA TTC GAT AGA ACG CTG AAC AAA TGG CT…
16 … TGG ATA GTC AAG CAA GTA GCC AAA CTT GGT AGG CCA CCC ACC GTT AGC GAC TAC AGC TAC GTT GGT GCC GAG A…
17 … TGG ATA GCT AAG CAA GTA GCC AAA CTT GGT AGG GCA CCC ACC GTT AAC GAC TAC AGT CGC ATT GGT GCC GAG A…
21GTA CAG ATC ATC GCT GGG TTT GAT AGA AAA TTG TCT GGC TGG CTT ACC CGT CAT GGC AGT CGT TTA AGT CCA AT…
22GTA CAG ATC GTT GCT GGG TTT GAC AGA AAG TTG ACT GCC TGG CTT CGA CGT CAT GGC AGC CAT GTG AGC GCA AT…
23GTA CAG ATC ATT GCT GGC TGG AAC AGA AAG CTG GCC AAC TGG CTT GCA CGA CAT GGC AGT CGT TTG AGT GCA AT…
26 …H._australis CGC CGT TGG AGA TTT GTT CCC CAC GTA CAA GTT AAC AGG TCT TTT GAA GTG GCA CTG AAG…
27GTA CAG ATC ATT GCT GGG TTT GAT AAA AAG TTG GCT ACC TGG ATT AAC CGT CAT GGC AGT GGT TTA AGC GCA GT…
[all …]

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