/dports/biology/emboss/EMBOSS-6.6.0/test/data/ |
H A D | dna.fitch | 2 ACG TAC GTA CGT ACG TAC GTA CGT ACG TAC GTA CGT ACG TAC GTA CGT ACG TAC GTA CGT 3 ACG TAC GTA CGT ACG TAC GTA CGT ACG TAC GTA CGT ACG TAC GTA CGT ACG TAC GTA CGT 5 ACG TAC GTA CGT ACG TAC GT. ... ACG TAC GTA CGT ACG TAC GTA CGT ACG TAC GTA CGT 6 ACG TAC GTA CGT ACG TAC GTA CGT ACG TAC GTA CGT ACG TAC GTA CGT TGC AAC GTA CGT 8 ACG TAC GTA CGT ACG TAC GTA CGT ACG TAC GTA CGT ACG TCG TAC GTA CGT ACG TAC GTA 9 CGT ACG TAC GTA CGT ACG TAA CGT ACG TAC GTA CGT ACG TAC GTA CGT ACG TAC GTA CGT
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/dports/math/octave-forge-gsl/gsl-2.1.1/src/ |
H A D | bootstrap | 135 GTA="./generate_array_template.sh" 138 ${GTA} int+ double "arg1+1" 1 LD_D_array.template.cc 139 ${GTA} int+ double "arg1+1" 2 LD_DD_array.template.cc 140 ${GTA} int+ double double "arg1+1" 1 LDD_D_array.template.cc 141 ${GTA} int+ double double "arg1+1" 2 LDD_DD_array.template.cc 144 ${GTA} int+ int+ double "arg2-arg1+1" 1 LLD_D_array.template.cc 145 ${GTA} int+ int+ double "arg2-arg1+1" 2 LLD_DD_array.template.cc 148 ${GTA} int+ int+ double "arg1+1" 1 LID_D_array.template.cc 149 ${GTA} int+ int+ double "arg1+1" 2 LID_DD_array.template.cc 152 ${GTA} legnorm size_t double double "arg2" 1 NSDD_D_array.template.cc [all …]
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/dports/biology/paml/paml4.9j/examples/MouseLemurs/ |
H A D | MouseLemurs.nuc | 18 …GTA CAA TTC GGA TTT CAA GAC GCT GCC TCC CCT ATT ATA GAA GAA TTA TTA TAC TTC CAT GAC CAC ACC CTT AT… 19 …GTA CAA TTC GGA TTT CAA GAC GCC GCC TCA CCT ATT ATA GAA GAA CTA CTA TAC TTT CAT GAC CAC ACT CTC AT… 22 …GTA TTC CTA ATT AGT TCT CTA GTT CTC TAT ATC ATC TCT CTA ATA CTC ACC ACC AAA CTC ATA CAC ACC AGC AC… 25 …GTA GAA ACA GTA TGA ACA ATC CTA CCT GCA GCA ATC CTC ATT CTT ATT GCT CTT CCA TCA TTA CGC ATT CTG TA… 30 …GTA TTT TTA ATT AGC TCA TTA GTC CTA TAC ATT ATT TCC CTT ATG CTT ACC ACG GAA CTT ACT CAT ACA AGC AC… 31 …GTA TTC TTA ATT AGC TCA TTA GTT CTA TAT ATC ATT TCC CTC ATG CTT ACC ACG GAA CTC ACC CAT ACA AGC AC… 32 …GTA TTT TTA ATT AGT TCA TTA GTC CTA TAT ATC ATT TCC CTT ATG CTT ACC ACG GAA CTC ACT CAT ACA AGC AC… 34 …GTA TTT TTA ATT AGC TCA TTA GTT CTT TAT ATC ATT TCC CTC ATG CTT ACC ACA GAA CTC ACC CAT ACA AGC AC… 35 …GTA TTT TTA ATT AGC TCA TTA GTT CTT TAT ATT ATT TCC CTT ATA CTT ACC ACG GAA CTC ACT CAT ACA AGC AC… 36 …GTA TTT TTA ATT AGC TCA TTA GTT CTA TAT ATC ATT TCC CTT ATG CTT ACC ACA GAA CTC ACT CAT ACA AGC AC… [all …]
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/dports/biology/p5-Bio-NEXUS/Bio-NEXUS-0.78/t/data/compliant/ |
H A D | Omland-Ravens.nex | 9 California.166 TAT CTC ACA TAA CAA GTA ATG CAA GAC CTA ACC AAA CTC AAA TAT CAT 10 California.168 TAT CTC ACA TAA CAA GTA ATG CAA GAC CTA ACC AAA CTC AAA TAT CAT 11 California.169 TAT CTC ACA TAA CAA GTA ATG CAA GAC CTA ACC AAA CTC AAA TAT CAT 12 California.170 TAT CTC ACA TAA CAA GTA ATG CAA GAC CTA ACC AAA CTC AAA TAT CAT 13 California.171 TAT CTC ACA TAA CAA GTA ATG CAA GAC CTA ACC AAA CTC AAA TAT CAT 14 California.172 TAT CTC ACA TAA CAA GTA ATG CAA GAC CTA ACC AAA CTC AAA TAT CAT 15 California.175 TAT CTC ACA TAA CAA GTA ATG CAA GAC CTA ACC AAA CTC AAA TAT CAT 23 California.881 TAT CTC ACA TAA CAA GTA ATG CAA GAC CTA ACC AAA CTC AAA TAT CAT 254 C.brachyrhynchosDS.CR.111099 TCC CAG GTA CAA CAA ACC CAA GTG ATC CTA CCA ACA GTA CAA GAC AAG 255 C.hawaiiensis.Kol.CR.txt.110999 CCA CAG GTA CAA TAA ACC CAG GTA ATC CTA CCA ACC ACA CAA GAC AAG [all …]
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/dports/biology/p5-BioPerl/BioPerl-1.7.7/t/data/ |
H A D | codeml45b.mlc | 3 …GTA ACT CCT CAA CCT GGA GTT CCG CCC GAG GAA GCA GGG GCC GCA GTA GCT GCT GAA TCT TCT ACT GGT ACA TG… 4 …GTA ACT CCT CAA CCT GGA GTT CCG CCC GAG GAA GCA GGG GCC GCA GTA GCT GCT GAA TCT TCT ACT GGT ACA TG… 5 …GTA ACT CCT CAA CCT GGA GTT CCG CCC GAG GAA GCA GGG GCC GCA GTA GCT GCT GAA TCT TCT ACT GGT ACA TG… 6 …GTA ACT CCT CAA CCT GGA GTT CCG CCC GAG GAA GCA GGG GCC GCA GTA GCT GCT GAA TCT TCT ACT GGT ACA TG… 7 …GTA ACT CCT CAA CCT GGA GTT CCG CCC GAG GAA GCA GGG GCC GCA GTA GCT GCT GAA TCT TCT ACT GGT ACA TG… 9 …GTA ACT CCT CAA CCT GGA GTT CCG CCC GAG GAA GCA GGG GCC GCA GTA GCT GCT GAA TCT TCT ACT GGT ACA TG… 10 …GTA ACT CCT CAA CCT GGA GTT CCG CCC GAG GAA GCA GGG GCC GCA GTA GCT GCT GAA TCT TCT ACT GGT ACA TG… 11 …GTA ACT CCT CAA CCT GGA GTT CCG CCC GAG GAA GCA GGG GCC GCA GTA GCT GCT GAA TCT TCT ACT GGT ACA TG… 61 …GTA 13 13 12 13 13 12 | GCA 15 15 16 16 16 16 | Glu GAA 24 24 25 24 24 25 | GGA 13 13 13 1… 83 GTA 13 13 13 | GCA 15 16 16 | Glu GAA 24 24 24 | GGA 13 13 13 [all …]
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/dports/biology/py-biopython/biopython-1.79/Tests/PAML/Results/yn00/ |
H A D | yn00_dottednum-4_9i.out | 3 …GTA CAA TGT ACA CAT GGA ATT AAG CCA GTG GTA CCA ACT CAA CCA CTG TTA AAT GGT AGC CTA GCA AAA GAG AA… 4 …GTA CAA TGT ACA CAT GGA ATT AAG CCA GTG GTA CCA ACT CAA CCA CTG TTA AAT GGT AGC CTA GCA AAA GAG AA… 5 …GTA CAA TAT ACA CAT GGA ATT AAG CCA GTG GTA CCA ACT CAA CCA CTG TTA AAT GGT AGC CTA GCA AAA GAG AA… 6 …GTA CAA TGT ACA TAT GGA ATT AAG CCA GTA GTA TCA ACT CAA CCA CTG TTA AGT GGT AGC CTA GCA GAA GAG GA… 7 …GTA CAA TGT ACA CAT GGA ATT AAG CCA GTG GTA TCA ACT CAA CCA CTG TTA AAT GGT AGC CTA GCA GAA GAG GA… 8 …GTA CAA TGT ACA TAT GGA ATT AAG CCA GTA GTA TCA ACT CAA CCA CTG TTA AAT GGT AGC CTA GTA GAA GAG GA… 9 …GTA CAA TGT ACA TAT GGA ATT AAG CCA GTA GTA TCA ACT CAA CCA CTG TTA AAT GGT AGC CTA GCA GAA GAG GA… 18 …AT CCA CCA CCC CCT CTA CTG CTT GAA GAC GAG GCA GCA GCG GCT GGA GGC GGG GGT GTA GTC GTG GTG GTT TAT… 97 …GTA 6 6 6 7 6 8 | GCA 4 4 4 4 4 3 | Glu GAA 6 6 6 7 7 8 | … 119 GTA 7 | GCA 5 | Glu GAA 7 | GGA 7 [all …]
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H A D | yn00_long-4_8.out | 3 …GTA CAA TGT ACA CAT GGA ATT AAG CCA GTG GTA CCA ACT CAA CCA CTG TTA AAT GGT AGC CTA GCA AAA GAG AA… 4 …GTA CAA TGT ACA CAT GGA ATT AAG CCA GTG GTA CCA ACT CAA CCA CTG TTA AAT GGT AGC CTA GCA AAA GAG AA… 5 …GTA CAA TAT ACA CAT GGA ATT AAG CCA GTG GTA CCA ACT CAA CCA CTG TTA AAT GGT AGC CTA GCA AAA GAG AA… 6 …GTA CAA TGT ACA TAT GGA ATT AAG CCA GTA GTA TCA ACT CAA CCA CTG TTA AGT GGT AGC CTA GCA GAA GAG GA… 7 …GTA CAA TGT ACA CAT GGA ATT AAG CCA GTG GTA TCA ACT CAA CCA CTG TTA AAT GGT AGC CTA GCA GAA GAG GA… 8 …GTA CAA TGT ACA TAT GGA ATT AAG CCA GTA GTA TCA ACT CAA CCA CTG TTA AAT GGT AGC CTA GTA GAA GAG GA… 9 …GTA CAA TGT ACA TAT GGA ATT AAG CCA GTA GTA TCA ACT CAA CCA CTG TTA AAT GGT AGC CTA GCA GAA GAG GA… 18 …AT CCA CCA CCC CCT CTA CTG CTT GAA GAC GAG GCA GCA GCG GCT GGA GGC GGG GGT GTA GTC GTG GTG GTT TAT… 97 …GTA 6 6 6 7 6 8 | GCA 4 4 4 4 4 3 | Glu GAA 6 6 6 7 7 8 | … 119 GTA 7 | GCA 5 | Glu GAA 7 | GGA 7 [all …]
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H A D | yn00-4_4.out | 3 …GTA ATC AAT ATT GAG GAC CTG ACA GAA AAG GAC AAA TTG AAG ATG GAA GTT GAC CAG CTC AAG AAA GAA GTG AC… 4 …GTA ATC AAT ATT GAG GAC CTG ACA GAA AAG GAC AAA TTG AAG ATG GAA GTT GAC CAG CTC AAG AAA GAA GTG AC… 5 …GTA ATC AAT ATT GAG GAC CTG ACA GAA AAG GAC AAA TTG AAG ATG GAA GTT GAC CAG CTC AAG AAA GAA GTG AC… 6 …GTA ATC AAT ATT GAG GAC CTG ACA GAA AAG GAC AAA TTG AAG ATG GAA GTT GAC CAG CTC AAG AAA GAA GTG AC… 7 …GTA ATC AAT ATT GAG GAC CTG ACA GAA AAG GAC AAA TTG AAG ATG GAA GTT GAC CAG CTC AAG AAA GAA GTG AC… 16 …AT ACA AGA ATC ATG ATT CAG CCA CCC CGA CTA CTC CTG GAA GAC GAG GAT GGA GGC GTA GTG GTT GTT GTT TAC… 81 GTA 3 3 3 3 4 | GCA 0 0 0 0 0 | Glu GAA 8 8 8 8 8 | GGA 1 1 1 1 1 105 GTA 16 | GCA 0 | Glu GAA 40 | GGA 5
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H A D | yn00-4_4c.out | 3 …GTA ATC AAT ATT GAG GAC CTG ACA GAA AAG GAC AAA TTG AAG ATG GAA GTT GAC CAG CTC AAG AAA GAA GTG AC… 4 …GTA ATC AAT ATT GAG GAC CTG ACA GAA AAG GAC AAA TTG AAG ATG GAA GTT GAC CAG CTC AAG AAA GAA GTG AC… 5 …GTA ATC AAT ATT GAG GAC CTG ACA GAA AAG GAC AAA TTG AAG ATG GAA GTT GAC CAG CTC AAG AAA GAA GTG AC… 6 …GTA ATC AAT ATT GAG GAC CTG ACA GAA AAG GAC AAA TTG AAG ATG GAA GTT GAC CAG CTC AAG AAA GAA GTG AC… 7 …GTA ATC AAT ATT GAG GAC CTG ACA GAA AAG GAC AAA TTG AAG ATG GAA GTT GAC CAG CTC AAG AAA GAA GTG AC… 16 …AT ACA AGA ATC ATG ATT CAG CCA CCC CGA CTA CTC CTG GAA GAC GAG GAT GGA GGC GTA GTG GTT GTT GTT TAC… 81 GTA 3 3 3 3 4 | GCA 0 0 0 0 0 | Glu GAA 8 8 8 8 8 | GGA 1 1 1 1 1 105 GTA 16 | GCA 0 | Glu GAA 40 | GGA 5
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H A D | yn00-4_5.out | 3 …GTA ATC AAT ATT GAG GAC CTG ACA GAA AAG GAC AAA TTG AAG ATG GAA GTT GAC CAG CTC AAG AAA GAA GTG AC… 4 …GTA ATC AAT ATT GAG GAC CTG ACA GAA AAG GAC AAA TTG AAG ATG GAA GTT GAC CAG CTC AAG AAA GAA GTG AC… 5 …GTA ATC AAT ATT GAG GAC CTG ACA GAA AAG GAC AAA TTG AAG ATG GAA GTT GAC CAG CTC AAG AAA GAA GTG AC… 6 …GTA ATC AAT ATT GAG GAC CTG ACA GAA AAG GAC AAA TTG AAG ATG GAA GTT GAC CAG CTC AAG AAA GAA GTG AC… 7 …GTA ATC AAT ATT GAG GAC CTG ACA GAA AAG GAC AAA TTG AAG ATG GAA GTT GAC CAG CTC AAG AAA GAA GTG AC… 16 …AT ACA AGA ATC ATG ATT CAG CCA CCC CGA CTA CTC CTG GAA GAC GAG GAT GGA GGC GTA GTG GTT GTT GTT TAC… 81 GTA 3 3 3 3 4 | GCA 0 0 0 0 0 | Glu GAA 8 8 8 8 8 | GGA 1 1 1 1 1 105 GTA 16 | GCA 0 | Glu GAA 40 | GGA 5
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H A D | yn00-4_6.out | 3 …GTA ATC AAT ATT GAG GAC CTG ACA GAA AAG GAC AAA TTG AAG ATG GAA GTT GAC CAG CTC AAG AAA GAA GTG AC… 4 …GTA ATC AAT ATT GAG GAC CTG ACA GAA AAG GAC AAA TTG AAG ATG GAA GTT GAC CAG CTC AAG AAA GAA GTG AC… 5 …GTA ATC AAT ATT GAG GAC CTG ACA GAA AAG GAC AAA TTG AAG ATG GAA GTT GAC CAG CTC AAG AAA GAA GTG AC… 6 …GTA ATC AAT ATT GAG GAC CTG ACA GAA AAG GAC AAA TTG AAG ATG GAA GTT GAC CAG CTC AAG AAA GAA GTG AC… 7 …GTA ATC AAT ATT GAG GAC CTG ACA GAA AAG GAC AAA TTG AAG ATG GAA GTT GAC CAG CTC AAG AAA GAA GTG AC… 16 …AT ACA AGA ATC ATG ATT CAG CCA CCC CGA CTA CTC CTG GAA GAC GAG GAT GGA GGC GTA GTG GTT GTT GTT TAC… 81 GTA 3 3 3 3 4 | GCA 0 0 0 0 0 | Glu GAA 8 8 8 8 8 | GGA 1 1 1 1 1 105 GTA 16 | GCA 0 | Glu GAA 40 | GGA 5
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H A D | yn00-4_7.out | 3 …GTA ATC AAT ATT GAG GAC CTG ACA GAA AAG GAC AAA TTG AAG ATG GAA GTT GAC CAG CTC AAG AAA GAA GTG AC… 4 …GTA ATC AAT ATT GAG GAC CTG ACA GAA AAG GAC AAA TTG AAG ATG GAA GTT GAC CAG CTC AAG AAA GAA GTG AC… 5 …GTA ATC AAT ATT GAG GAC CTG ACA GAA AAG GAC AAA TTG AAG ATG GAA GTT GAC CAG CTC AAG AAA GAA GTG AC… 6 …GTA ATC AAT ATT GAG GAC CTG ACA GAA AAG GAC AAA TTG AAG ATG GAA GTT GAC CAG CTC AAG AAA GAA GTG AC… 7 …GTA ATC AAT ATT GAG GAC CTG ACA GAA AAG GAC AAA TTG AAG ATG GAA GTT GAC CAG CTC AAG AAA GAA GTG AC… 16 …AT ACA AGA ATC ATG ATT CAG CCA CCC CGA CTA CTC CTG GAA GAC GAG GAT GGA GGC GTA GTG GTT GTT GTT TAC… 81 GTA 3 3 3 3 4 | GCA 0 0 0 0 0 | Glu GAA 8 8 8 8 8 | GGA 1 1 1 1 1 105 GTA 16 | GCA 0 | Glu GAA 40 | GGA 5
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H A D | yn00-4_8.out | 3 …GTA ATC AAT ATT GAG GAC CTG ACA GAA AAG GAC AAA TTG AAG ATG GAA GTT GAC CAG CTC AAG AAA GAA GTG AC… 4 …GTA ATC AAT ATT GAG GAC CTG ACA GAA AAG GAC AAA TTG AAG ATG GAA GTT GAC CAG CTC AAG AAA GAA GTG AC… 5 …GTA ATC AAT ATT GAG GAC CTG ACA GAA AAG GAC AAA TTG AAG ATG GAA GTT GAC CAG CTC AAG AAA GAA GTG AC… 6 …GTA ATC AAT ATT GAG GAC CTG ACA GAA AAG GAC AAA TTG AAG ATG GAA GTT GAC CAG CTC AAG AAA GAA GTG AC… 7 …GTA ATC AAT ATT GAG GAC CTG ACA GAA AAG GAC AAA TTG AAG ATG GAA GTT GAC CAG CTC AAG AAA GAA GTG AC… 16 …AT ACA AGA ATC ATG ATT CAG CCA CCC CGA CTA CTC CTG GAA GAC GAG GAT GGA GGC GTA GTG GTT GTT GTT TAC… 81 …GTA 3 3 3 3 4 | GCA 0 0 0 0 0 | Glu GAA 8 8 8 8 8 | GGA 1 … 105 GTA 16 | GCA 0 | Glu GAA 40 | GGA 5
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H A D | yn00_dotted-4_9i.out | 3 …GTA ATC AAT ATT GAG GAC CTG ACA GAA AAG GAC AAA TTG AAG ATG GAA GTT GAC CAG CTC AAG AAA GAA GTG AC… 4 …GTA ATC AAT ATT GAG GAC CTG ACA GAA AAG GAC AAA TTG AAG ATG GAA GTT GAC CAG CTC AAG AAA GAA GTG AC… 5 …GTA ATC AAT ATT GAG GAC CTG ACA GAA AAG GAC AAA TTG AAG ATG GAA GTT GAC CAG CTC AAG AAA GAA GTG AC… 6 …GTA ATC AAT ATT GAG GAC CTG ACA GAA AAG GAC AAA TTG AAG ATG GAA GTT GAC CAG CTC AAG AAA GAA GTG AC… 7 …GTA ATC AAT ATT GAG GAC CTG ACA GAA AAG GAC AAA TTG AAG ATG GAA GTT GAC CAG CTC AAG AAA GAA GTG AC… 16 …AT ACA AGA ATC ATG ATT CAG CCA CCC CGA CTA CTC CTG GAA GAC GAG GAT GGA GGC GTA GTG GTT GTT GTT TAC… 81 …GTA 3 3 3 3 4 | GCA 0 0 0 0 0 | Glu GAA 8 8 8 8 8 | GGA 1 … 105 GTA 16 | GCA 0 | Glu GAA 40 | GGA 5
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H A D | yn00-4_1.out | 3 …GTA ATC AAT ATT GAG GAC CTG ACA GAA AAG GAC AAA TTG AAG ATG GAA GTT GAC CAG CTC AAG AAA GAA GTG AC… 4 …GTA ATC AAT ATT GAG GAC CTG ACA GAA AAG GAC AAA TTG AAG ATG GAA GTT GAC CAG CTC AAG AAA GAA GTG AC… 5 …GTA ATC AAT ATT GAG GAC CTG ACA GAA AAG GAC AAA TTG AAG ATG GAA GTT GAC CAG CTC AAG AAA GAA GTG AC… 6 …GTA ATC AAT ATT GAG GAC CTG ACA GAA AAG GAC AAA TTG AAG ATG GAA GTT GAC CAG CTC AAG AAA GAA GTG AC… 7 …GTA ATC AAT ATT GAG GAC CTG ACA GAA AAG GAC AAA TTG AAG ATG GAA GTT GAC CAG CTC AAG AAA GAA GTG AC… 65 GTA 3 3 3 3 4 | GCA 0 0 0 0 0 | Glu GAA 8 8 8 8 8 | GGA 1 1 1 1 1 89 GTA 16 | GCA 0 | Glu GAA 40 | GGA 5
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H A D | yn00-4_3.out | 3 …GTA ATC AAT ATT GAG GAC CTG ACA GAA AAG GAC AAA TTG AAG ATG GAA GTT GAC CAG CTC AAG AAA GAA GTG AC… 4 …GTA ATC AAT ATT GAG GAC CTG ACA GAA AAG GAC AAA TTG AAG ATG GAA GTT GAC CAG CTC AAG AAA GAA GTG AC… 5 …GTA ATC AAT ATT GAG GAC CTG ACA GAA AAG GAC AAA TTG AAG ATG GAA GTT GAC CAG CTC AAG AAA GAA GTG AC… 6 …GTA ATC AAT ATT GAG GAC CTG ACA GAA AAG GAC AAA TTG AAG ATG GAA GTT GAC CAG CTC AAG AAA GAA GTG AC… 7 …GTA ATC AAT ATT GAG GAC CTG ACA GAA AAG GAC AAA TTG AAG ATG GAA GTT GAC CAG CTC AAG AAA GAA GTG AC… 65 GTA 3 3 3 3 4 | GCA 0 0 0 0 0 | Glu GAA 8 8 8 8 8 | GGA 1 1 1 1 1 89 GTA 16 | GCA 0 | Glu GAA 40 | GGA 5
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/dports/graphics/py-gdal/gdal-3.3.3/doc/source/drivers/raster/ |
H A D | gta.rst | 4 GTA - Generic Tagged Arrays 7 .. shortname:: GTA 11 GDAL can read and write GTA data files through 14 GTA is a file format that can store any kind of multidimensional array 28 - **COMPRESS=method** Set the GTA compression method: NONE (default) or 35 - `GTA home page <http://gta.nongnu.org>`__
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/dports/graphics/p5-Geo-GDAL/gdal-3.3.3/doc/source/drivers/raster/ |
H A D | gta.rst | 4 GTA - Generic Tagged Arrays 7 .. shortname:: GTA 11 GDAL can read and write GTA data files through 14 GTA is a file format that can store any kind of multidimensional array 28 - **COMPRESS=method** Set the GTA compression method: NONE (default) or 35 - `GTA home page <http://gta.nongnu.org>`__
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/dports/graphics/gdal/gdal-3.3.3/doc/source/drivers/raster/ |
H A D | gta.rst | 4 GTA - Generic Tagged Arrays 7 .. shortname:: GTA 11 GDAL can read and write GTA data files through 14 GTA is a file format that can store any kind of multidimensional array 28 - **COMPRESS=method** Set the GTA compression method: NONE (default) or 35 - `GTA home page <http://gta.nongnu.org>`__
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/dports/biology/gatk/gatk-4.2.0.0/docs/ |
H A D | unphased.dot | 5 "TGA" -> "GAA" -> "AAA" -> "AAC" -> "ACG" -> "CGT" -> "GTA" 6 "AAA" -> "AAT" -> "ATG" -> "TGT" -> "GTA" 7 "GTA" -> "TAT" -> "ATT" -> "TTT" -> "TTG" 8 "GTA" -> "TAC" -> "ACT" -> "CTT" -> "TTG" -> "TGG"
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/dports/biology/py-ete3/ete3-3.1.2/ete3/test/ete_evol_data/S_example/paml/fb/ |
H A D | rst | 111 …GTA (V) GTA (V) GTA (V) GTG (V) : TTT(0.000) TTC(0.000) TTA(0.000) TTG(0.000) TCT(0.000) TCC(0.000… 201 …GTA (V) GTA (V) GTA (V) GTG (V) : TTT(0.000) TTC(0.000) TTA(0.000) TTG(0.000) TCT(0.000) TCC(0.000… 291 …GTA (V) GTA (V) GTA (V) GTG (V) : TTT(0.000) TTC(0.000) TTA(0.000) TTG(0.000) TCT(0.000) TCC(0.000… 381 …84 1 GTA (V) GTA (V) GTA (V) GTG (V) : GTG V 1.000 (V 1.000) GTA V 1.000 (V 1.000) GTA V 1… 409 84 GTG (V) 1.000 -> GTA (V) 1.000 472 …AG ACA CGG AGG AGA GCC ATG AGG TGC CGC CGC AGG TAC AGA CTG AGA CGT AGA AGA CCC TAT CAT ATT GTA TCT 473 …AG ACA CGG AGG AGA GCC ATG AGG TGT CGC CGC AGG TAC AGG CTG AGA CGT AGA AGC TGT TAC CAC ATT GTA TCT 474 …AG ACA CGG AGG AGA GCC ATG AGG TGC CGC CGC AGG TAC AGA CTG AGA CGT AAA AGA TGT TAC CAT ATT GTA TCT 477 …AG ACA CGG AGG AGA GCC ATG AGG TGT CGC CGC AGG TAC AGG CTG AGA CGT AGA AGA TGT TAC CAC ATT GTA TCT 581 84 GTG.GTA (S N: 1.000 2.000 Sd Nd: 1.0 0.0) [all …]
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/dports/biology/py-ete3/ete3-3.1.2/examples/evol/data/S_example/paml/fb/ |
H A D | rst | 111 …GTA (V) GTA (V) GTA (V) GTG (V) : TTT(0.000) TTC(0.000) TTA(0.000) TTG(0.000) TCT(0.000) TCC(0.000… 201 …GTA (V) GTA (V) GTA (V) GTG (V) : TTT(0.000) TTC(0.000) TTA(0.000) TTG(0.000) TCT(0.000) TCC(0.000… 291 …GTA (V) GTA (V) GTA (V) GTG (V) : TTT(0.000) TTC(0.000) TTA(0.000) TTG(0.000) TCT(0.000) TCC(0.000… 381 …84 1 GTA (V) GTA (V) GTA (V) GTG (V) : GTG V 1.000 (V 1.000) GTA V 1.000 (V 1.000) GTA V 1… 409 84 GTG (V) 1.000 -> GTA (V) 1.000 472 …AG ACA CGG AGG AGA GCC ATG AGG TGC CGC CGC AGG TAC AGA CTG AGA CGT AGA AGA CCC TAT CAT ATT GTA TCT 473 …AG ACA CGG AGG AGA GCC ATG AGG TGT CGC CGC AGG TAC AGG CTG AGA CGT AGA AGC TGT TAC CAC ATT GTA TCT 474 …AG ACA CGG AGG AGA GCC ATG AGG TGC CGC CGC AGG TAC AGA CTG AGA CGT AAA AGA TGT TAC CAT ATT GTA TCT 477 …AG ACA CGG AGG AGA GCC ATG AGG TGT CGC CGC AGG TAC AGG CTG AGA CGT AGA AGA TGT TAC CAC ATT GTA TCT 581 84 GTG.GTA (S N: 1.000 2.000 Sd Nd: 1.0 0.0) [all …]
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/dports/biology/wise/wise2.4.1/wisecfg/ |
H A D | worm.gf | 55 AA-GTA-GTT 6.5 83 -A-GTA-GTT 2.42424 88 A--GTA-GTT 1.9697 96 T--GTA-GTT 1.63636 119 AA-GTA-G-- 0.555556 206 A--GTA-GTT 1.09756 347 -G-GTA-GTT 0.7 633 GTA 18214.000000 701 GTA 7376.000000 769 GTA 6705.000000 [all …]
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/dports/biology/py-biopython/biopython-1.79/Tests/PAML/Results/codeml/ |
H A D | tree_regexp_versatility.out | 5 …GTA TAT AGG CAC TTT AAA GAC AAA AAG AAT CTG GTA CTG GAC GAA ACC GTT GCA TTT TTT GTT AGC GGT GAG GC… 6 …GTA CCT GGG ATA ATC AAA GGT AAG AAA TAC CCA GCT AAG AAT CAC AAC ATC AGG GTC AAG GAT ATT CTA TTG TC… 7 …GTA AAT ATT CCA AGA GCT TCT ATC TTA TAT GAT TTT AAG ACT GAA AAT TTA ACT CTA TTC TTA CCA AAT ATC GA… 8 …GTA ATG TGG AGT GGA ATG CCA ATG GGT ATC AAT GAA GCT TTG AAC ACC TTT GAT GTC GAT GAA GTC CTA TAT GC… 17 …GC GGC GGC GGC GGC GGG GGG GGT GGT GGT GGT GGT GGT GGT GGT GTA GTA GTA GTA GTA GTA GTA GTA GTA GTC… 18 …GTA GTT TTC TTG CAA CAG AGA ATT CAC CAC CAT GCA --- AAA AAA AAA ATG CAA CGT TTA --- ATA CAC CAT CA… 19 …GTA GTC GTG GTT GCA TTA GTT ATT GTT GTA GTT GTT TTA --- CTG GTT GTA GTT ACA ATC ATA ATC TTG TGC AT… 20 …GTA AGA AGA CGT AGA GGT AAA GCA TCG AAG AAA CGC AAG TCT ACT GGT ACT GTT ATC ATT ATT GTT ATT GTG GC… 82 GTA 9 5 4 5 | GCA 7 6 1 10 | Glu GAA 15 33 40 35 | GGA 9 4 4 10 131 GTA 23 | GCA 24 | Glu E GAA 123 | GGA 27
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/dports/biology/py-biopython/biopython-1.79/Tests/PAML/Alignments/ |
H A D | lysinYangSwanson2002.nuc | 7 …GTA AAC AAG GCT TTT GAA GTT GCA CTG AAG GTA CAG ATC ATT GCT GGA TTC GAT AGA ACG CTG GTC AAA TGG CT… 10 …GTA AAC AAG GCT TTT GAA ATT GCA CTG AAG GAA GAG ATC GTT GCT GGA TTC GAT AGA ACG CTG AAC AAA TGG CT… 11 …GTA AAC AAG GCT TTT GAA ATT GCA CTG AAG GAA GAG ATC GTT GCT GGA TTC GAT AGA ACG CTG AAC AAA TGG CT… 16 … TGG ATA GTC AAG CAA GTA GCC AAA CTT GGT AGG CCA CCC ACC GTT AGC GAC TAC AGC TAC GTT GGT GCC GAG A… 17 … TGG ATA GCT AAG CAA GTA GCC AAA CTT GGT AGG GCA CCC ACC GTT AAC GAC TAC AGT CGC ATT GGT GCC GAG A… 21 …GTA CAG ATC ATC GCT GGG TTT GAT AGA AAA TTG TCT GGC TGG CTT ACC CGT CAT GGC AGT CGT TTA AGT CCA AT… 22 …GTA CAG ATC GTT GCT GGG TTT GAC AGA AAG TTG ACT GCC TGG CTT CGA CGT CAT GGC AGC CAT GTG AGC GCA AT… 23 …GTA CAG ATC ATT GCT GGC TGG AAC AGA AAG CTG GCC AAC TGG CTT GCA CGA CAT GGC AGT CGT TTG AGT GCA AT… 26 …H._australis CGC CGT TGG AGA TTT GTT CCC CAC GTA CAA GTT AAC AGG TCT TTT GAA GTG GCA CTG AAG… 27 …GTA CAG ATC ATT GCT GGG TTT GAT AAA AAG TTG GCT ACC TGG ATT AAC CGT CAT GGC AGT GGT TTA AGC GCA GT… [all …]
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