/dports/biology/vt/vt-0.57721/lib/htslib/htslib/ |
H A D | tbx.h | 58 …#define tbx_itr_queryi(tbx, tid, beg, end) hts_itr_query((tbx)->idx, (tid), (beg), (end), tbx_read… 59 …s) hts_itr_querys((tbx)->idx, (s), (hts_name2id_f)(tbx_name2id), (tbx), hts_itr_query, tbx_readrec)
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H A D | vcf.h | 795 … #define bcf_itr_queryi(idx, tid, beg, end) hts_itr_query((idx), (tid), (beg), (end), bcf_readrec) 796 … s) hts_itr_querys((idx), (s), (hts_name2id_f)(bcf_hdr_name2id), (hdr), hts_itr_query, bcf_readrec)
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H A D | hts.h | 668 …hts_itr_t *hts_itr_query(const hts_idx_t *idx, int tid, int beg, int end, hts_readrec_func *readre…
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/dports/biology/bedtools/bedtools2-2.30.0/src/utils/htslib/htslib/ |
H A D | tbx.h | 58 …#define tbx_itr_queryi(tbx, tid, beg, end) hts_itr_query((tbx)->idx, (tid), (beg), (end), tbx_read… 59 …s) hts_itr_querys((tbx)->idx, (s), (hts_name2id_f)(tbx_name2id), (tbx), hts_itr_query, tbx_readrec)
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H A D | vcf.h | 795 … #define bcf_itr_queryi(idx, tid, beg, end) hts_itr_query((idx), (tid), (beg), (end), bcf_readrec) 796 … s) hts_itr_querys((idx), (s), (hts_name2id_f)(bcf_hdr_name2id), (hdr), hts_itr_query, bcf_readrec)
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H A D | hts.h | 680 …hts_itr_t *hts_itr_query(const hts_idx_t *idx, int tid, int beg, int end, hts_readrec_func *readre…
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/dports/biology/stacks/stacks-2.4/htslib/htslib/ |
H A D | tbx.h | 58 …#define tbx_itr_queryi(tbx, tid, beg, end) hts_itr_query((tbx)->idx, (tid), (beg), (end), tbx_read… 59 …s) hts_itr_querys((tbx)->idx, (s), (hts_name2id_f)(tbx_name2id), (tbx), hts_itr_query, tbx_readrec)
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H A D | vcf.h | 795 … #define bcf_itr_queryi(idx, tid, beg, end) hts_itr_query((idx), (tid), (beg), (end), bcf_readrec) 796 … s) hts_itr_querys((idx), (s), (hts_name2id_f)(bcf_hdr_name2id), (hdr), hts_itr_query, bcf_readrec)
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H A D | hts.h | 666 …hts_itr_t *hts_itr_query(const hts_idx_t *idx, int tid, int beg, int end, hts_readrec_func *readre…
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/dports/biology/kallisto/kallisto-0.46.1/ext/htslib/htslib/ |
H A D | tbx.h | 58 …#define tbx_itr_queryi(tbx, tid, beg, end) hts_itr_query((tbx)->idx, (tid), (beg), (end), tbx_read… 59 …s) hts_itr_querys((tbx)->idx, (s), (hts_name2id_f)(tbx_name2id), (tbx), hts_itr_query, tbx_readrec)
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H A D | vcf.h | 795 … #define bcf_itr_queryi(idx, tid, beg, end) hts_itr_query((idx), (tid), (beg), (end), bcf_readrec) 796 … s) hts_itr_querys((idx), (s), (hts_name2id_f)(bcf_hdr_name2id), (hdr), hts_itr_query, bcf_readrec)
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H A D | hts.h | 628 …hts_itr_t *hts_itr_query(const hts_idx_t *idx, int tid, int beg, int end, hts_readrec_func *readre…
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/dports/biology/py-pysam/pysam-0.18.0/htslib/htslib/ |
H A D | tbx.h | 58 …#define tbx_itr_queryi(tbx, tid, beg, end) hts_itr_query((tbx)->idx, (tid), (beg), (end), tbx_read… 59 …s) hts_itr_querys((tbx)->idx, (s), (hts_name2id_f)(tbx_name2id), (tbx), hts_itr_query, tbx_readrec)
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H A D | vcf.h | 1181 … #define bcf_itr_queryi(idx, tid, beg, end) hts_itr_query((idx), (tid), (beg), (end), bcf_readrec) 1182 … s) hts_itr_querys((idx), (s), (hts_name2id_f)(bcf_hdr_name2id), (hdr), hts_itr_query, bcf_readrec)
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H A D | hts.h | 1243 hts_itr_t *hts_itr_query(const hts_idx_t *idx, int tid, hts_pos_t beg, hts_pos_t end, hts_readrec_f…
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/dports/biology/freebayes/freebayes-1.3.5/contrib/htslib/htslib/ |
H A D | tbx.h | 58 …#define tbx_itr_queryi(tbx, tid, beg, end) hts_itr_query((tbx)->idx, (tid), (beg), (end), tbx_read… 59 …s) hts_itr_querys((tbx)->idx, (s), (hts_name2id_f)(tbx_name2id), (tbx), hts_itr_query, tbx_readrec)
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H A D | vcf.h | 1180 … #define bcf_itr_queryi(idx, tid, beg, end) hts_itr_query((idx), (tid), (beg), (end), bcf_readrec) 1181 … s) hts_itr_querys((idx), (s), (hts_name2id_f)(bcf_hdr_name2id), (hdr), hts_itr_query, bcf_readrec)
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H A D | hts.h | 1105 hts_itr_t *hts_itr_query(const hts_idx_t *idx, int tid, hts_pos_t beg, hts_pos_t end, hts_readrec_f…
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/dports/biology/htslib/htslib-1.14/htslib/ |
H A D | tbx.h | 58 …#define tbx_itr_queryi(tbx, tid, beg, end) hts_itr_query((tbx)->idx, (tid), (beg), (end), tbx_read… 59 …s) hts_itr_querys((tbx)->idx, (s), (hts_name2id_f)(tbx_name2id), (tbx), hts_itr_query, tbx_readrec)
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H A D | vcf.h | 1181 … #define bcf_itr_queryi(idx, tid, beg, end) hts_itr_query((idx), (tid), (beg), (end), bcf_readrec) 1182 … s) hts_itr_querys((idx), (s), (hts_name2id_f)(bcf_hdr_name2id), (hdr), hts_itr_query, bcf_readrec)
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H A D | hts.h | 1243 hts_itr_t *hts_itr_query(const hts_idx_t *idx, int tid, hts_pos_t beg, hts_pos_t end, hts_readrec_f…
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/dports/biology/plink/plink-ng-79b2df8c/1.9/ |
H A D | hts.h | 371 …hts_itr_t *hts_itr_query(const hts_idx_t *idx, int tid, int beg, int end, hts_readrec_func *readre…
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/dports/biology/freebayes/freebayes-1.3.5/contrib/htslib/ |
H A D | README.large_positions.md | 192 [parameters] hts_itr_query()
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/dports/biology/htslib/htslib-1.14/ |
H A D | README.large_positions.md | 192 [parameters] hts_itr_query()
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/dports/biology/kallisto/kallisto-0.46.1/ext/htslib/ |
H A D | sam.c | 673 return hts_itr_query(NULL, tid, beg, end, sam_bam_cram_readrec); in sam_itr_queryi() 677 return hts_itr_query(idx, tid, beg, end, bam_readrec); in sam_itr_queryi() 692 … return hts_itr_querys(idx, region, (hts_name2id_f)(bam_name2id), hdr, hts_itr_query, bam_readrec); in sam_itr_querys()
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