Searched refs:remap_seqlength (Results 1 – 4 of 4) sorted by relevance
/dports/biology/gmap/gmap-2020-09-12/src/ |
H A D | kmer-search.h | 23 Kmer_remap_transcriptome (char *remap_sequence, int remap_seqlength,
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H A D | kmer-search.c | 4861 Kmer_remap_transcriptome (char *remap_sequence, int remap_seqlength, in Kmer_remap_transcriptome() argument 4908 remap_compress_fwd = Compress_new_fwd(remap_sequence,remap_seqlength); in Kmer_remap_transcriptome() 4917 tplus_diagterm_5 = remap_seqlength - querypos; in Kmer_remap_transcriptome() 4926 query_lastpos = remap_seqlength - index1part_tr; in Kmer_remap_transcriptome() 4932 tplus_diagterm_3 = remap_seqlength - querypos; in Kmer_remap_transcriptome() 4957 pos5,/*pos3*/remap_seqlength,/*plusp*/true,/*genestrand*/0); in Kmer_remap_transcriptome() 4963 /*high*/tr_left+remap_seqlength); in Kmer_remap_transcriptome() 4973 trend = trstart + remap_seqlength; in Kmer_remap_transcriptome() 5067 pos5,/*pos3*/remap_seqlength,/*plusp*/false,/*genestrand*/0); in Kmer_remap_transcriptome() 5073 /*high*/tr_left+remap_seqlength); in Kmer_remap_transcriptome() [all …]
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H A D | stage3hr.c | 5286 int remap_seqlength; in Stage3end_new_splice() local 5585 remap_sequence = Substring_genomic_sequence(&remap_seqlength,substring_other,genomecomp); in Stage3end_new_splice() 5586 if ((transcripts = Kmer_remap_transcriptome(remap_sequence,remap_seqlength,new->other_chrnum, in Stage3end_new_splice() 5622 int remap_seqlength; in Stage3end_new_distant() local 5877 remap_sequence = Substring_genomic_sequence(&remap_seqlength,substring_other,genomecomp); in Stage3end_new_distant() 5878 if ((transcripts = Kmer_remap_transcriptome(remap_sequence,remap_seqlength,new->other_chrnum, in Stage3end_new_distant() 11325 int remap_seqlength; in Stage3pair_new() local 11814 remap_sequence = Stage3end_substrings_genomic_sequence(&remap_seqlength,hit3,genomecomp); in Stage3pair_new() 11817 if ((transcripts = Kmer_remap_transcriptome(remap_sequence,remap_seqlength,hit3->chrnum, in Stage3pair_new() 11829 remap_sequence = Stage3end_substrings_genomic_sequence(&remap_seqlength,hit5,genomecomp); in Stage3pair_new() [all …]
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H A D | stage1hr.c | 1027 int remap_seqlength; in remap_to_transcriptome() local 1034 remap_sequence = Stage3end_substrings_genomic_sequence(&remap_seqlength,hit,genomecomp); in remap_to_transcriptome() 1035 if ((transcripts = Kmer_remap_transcriptome(remap_sequence,remap_seqlength, in remap_to_transcriptome()
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