| /dports/biology/minimap2/minimap2-2.24/tex/ |
| H A D | minimap2.tex | 226 \subsubsection{Alignment with 2-piece affine gap cost}
253 \subsubsection{The Suzuki-Kasahara formulation}
365 \subsubsection{The Z-drop heuristic}
387 \subsubsection{Filtering out misplaced anchors}
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| /dports/ftp/R-cran-RCurl/RCurl/inst/examples/ |
| H A D | worm.S | 37 DNA = "feature coordinates only", define
66 DNA ="flanking sequences only", define
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| /dports/biology/bowtie/bowtie-1.3.1/scripts/test/ |
| H A D | DNA.pm | 22 package DNA; package
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| /dports/biology/bowtie2/bowtie2-2.4.4/scripts/test/ |
| H A D | DNA.pm | 22 package DNA; package
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| /dports/biology/hisat2/hisat2-2.2.1/scripts/test/ |
| H A D | DNA.pm | 22 package DNA; package
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| /dports/biology/py-bx-python/bx-python-0.8.13/lib/bx/ |
| H A D | seqmapping.py | 38 DNA = CharToIntArrayMapping() variable
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| /dports/biology/bowtie2/bowtie2-2.4.4/scripts/sim/ |
| H A D | DNA.pm | 22 package DNA; package
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| /dports/biology/jalview/jalview/src/jalview/xml/binding/sifts/ |
| H A D | EntityType.java | 40 DNA("DNA"), enumConstant
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| /dports/biology/hisat2/hisat2-2.2.1/scripts/sim/ |
| H A D | DNA.pm | 22 package DNA; package
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| /dports/biology/py-biopython/biopython-1.79/Tests/ |
| H A D | test_EmbossPhylipNew.py | 105 def distances_from_alignment(self, filename, DNA=True): argument
193 def parsimony_tree(self, filename, format, DNA=True): argument
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| /dports/biology/mothur/mothur-1.46.1/source/commands/ |
| H A D | clearcutcommand.h | 43 …e, quiet, norandom, shuffle, neighbor, expblen, expdist, stdoutWanted, kimura, jukes, protein, DNA; variable
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| /dports/biology/wise/wise2.4.1/src/dynlibsrc/ |
| H A D | dna.h | 20 #define DNA Wise2_DNA macro
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| /dports/science/jmol/jmol-14.32.7/src/org/jmol/c/ |
| H A D | STR.java | 39 DNA(4,0xFFAE00FE), enumConstant
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| /dports/biology/py-scikit-bio/scikit-bio-0.5.6/skbio/sequence/ |
| H A D | _dna.py | 16 class DNA(GrammaredSequence, NucleotideMixin, class
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| /dports/biology/jalview/jalview/src/jalview/analysis/scoremodels/ |
| H A D | ScoreModels.java | 42 private final ScoreMatrix DNA; field in ScoreModels
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| /dports/biology/abyss/abyss-2.3.1/vendor/btl_bloomfilter/Tests/Unit/ |
| H A D | CountingBloomFilterTests.cpp | 112 string DNA = "ATCG"; variable
|
| /dports/multimedia/v4l-utils/linux-5.13-rc2/arch/x86/kernel/cpu/ |
| H A D | centaur.c | 88 DNA = 1<<15, enumerator
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| /dports/multimedia/v4l_compat/linux-5.13-rc2/arch/x86/kernel/cpu/ |
| H A D | centaur.c | 88 DNA = 1<<15, enumerator
|
| /dports/multimedia/libv4l/linux-5.13-rc2/arch/x86/kernel/cpu/ |
| H A D | centaur.c | 88 DNA = 1<<15, enumerator
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| /dports/biology/p5-BioPerl/BioPerl-1.7.7/lib/Bio/DB/ |
| H A D | IndexedBase.pm | 264 use constant DNA => 1; constant
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| /dports/biology/lamarc/lamarc-2.1.8/src/control/ |
| H A D | constants.cpp | 39 const std::string lamarcstrings::DNA = "DNA"; member in lamarcstrings
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| H A D | constants.h | 228 static const std::string DNA ; variable
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| /dports/biology/seqio/seqio-1.2.2/ |
| H A D | seqio.h | 57 #define DNA 1 macro
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| /dports/textproc/agrep/agrep-2.04/ |
| H A D | main.c | 26 int DNA = 0; variable
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| /dports/biology/jalview/jalview/src/jalview/analysis/ |
| H A D | AlignSeq.java | 63 public static final String DNA = "dna"; field in AlignSeq
|