| /dports/biology/freebayes/freebayes-1.3.5/contrib/htslib/ |
| H A D | faidx.c | 65 faidx_t *fai = (faidx_t *)v; in fai_name2id() local
328 static int fai_save(const faidx_t *fai, hFILE *fp) { in fai_save()
358 faidx_t *fai; in fai_read() local
424 void fai_destroy(faidx_t *fai) in fai_destroy()
442 faidx_t *fai = NULL; in fai_build3_core() local
549 faidx_t *fai = NULL; in fai_load3_core() local
810 int faidx_fetch_nseq(const faidx_t *fai) in faidx_fetch_nseq()
815 int faidx_nseq(const faidx_t *fai) in faidx_nseq()
820 const char *faidx_iseq(const faidx_t *fai, int i) in faidx_iseq()
825 int faidx_seq_len(const faidx_t *fai, const char *seq) in faidx_seq_len()
[all …]
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| /dports/biology/py-pysam/pysam-0.18.0/htslib/ |
| H A D | faidx.c | 65 faidx_t *fai = (faidx_t *)v; in fai_name2id() local
328 static int fai_save(const faidx_t *fai, hFILE *fp) { in fai_save()
358 faidx_t *fai; in fai_read() local
424 void fai_destroy(faidx_t *fai) in fai_destroy()
442 faidx_t *fai = NULL; in fai_build3_core() local
549 faidx_t *fai = NULL; in fai_load3_core() local
810 int faidx_fetch_nseq(const faidx_t *fai) in faidx_fetch_nseq()
815 int faidx_nseq(const faidx_t *fai) in faidx_nseq()
820 const char *faidx_iseq(const faidx_t *fai, int i) in faidx_iseq()
825 int faidx_seq_len(const faidx_t *fai, const char *seq) in faidx_seq_len()
[all …]
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| /dports/biology/htslib/htslib-1.14/ |
| H A D | faidx.c | 65 faidx_t *fai = (faidx_t *)v; in fai_name2id() local
328 static int fai_save(const faidx_t *fai, hFILE *fp) { in fai_save()
358 faidx_t *fai; in fai_read() local
424 void fai_destroy(faidx_t *fai) in fai_destroy()
442 faidx_t *fai = NULL; in fai_build3_core() local
549 faidx_t *fai = NULL; in fai_load3_core() local
810 int faidx_fetch_nseq(const faidx_t *fai) in faidx_fetch_nseq()
815 int faidx_nseq(const faidx_t *fai) in faidx_nseq()
820 const char *faidx_iseq(const faidx_t *fai, int i) in faidx_iseq()
825 int faidx_seq_len(const faidx_t *fai, const char *seq) in faidx_seq_len()
[all …]
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| /dports/biology/vt/vt-0.57721/lib/htslib/ |
| H A D | faidx.c | 178 static int fai_save(const faidx_t *fai, hFILE *fp) { in fai_save()
199 faidx_t *fai; in fai_read() local
244 void fai_destroy(faidx_t *fai) in fai_destroy()
261 faidx_t *fai = NULL; in fai_build3() local
342 faidx_t *fai = NULL; in fai_load3() local
457 char *fai_fetch(const faidx_t *fai, const char *str, int *len) in fai_fetch()
542 int faidx_fetch_nseq(const faidx_t *fai) in faidx_fetch_nseq()
547 int faidx_nseq(const faidx_t *fai) in faidx_nseq()
552 const char *faidx_iseq(const faidx_t *fai, int i) in faidx_iseq()
557 int faidx_seq_len(const faidx_t *fai, const char *seq) in faidx_seq_len()
[all …]
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| /dports/biology/stacks/stacks-2.4/htslib/ |
| H A D | faidx.c | 178 static int fai_save(const faidx_t *fai, hFILE *fp) { in fai_save()
199 faidx_t *fai; in fai_read() local
244 void fai_destroy(faidx_t *fai) in fai_destroy()
261 faidx_t *fai = NULL; in fai_build3() local
342 faidx_t *fai = NULL; in fai_load3() local
457 char *fai_fetch(const faidx_t *fai, const char *str, int *len) in fai_fetch()
542 int faidx_fetch_nseq(const faidx_t *fai) in faidx_fetch_nseq()
547 int faidx_nseq(const faidx_t *fai) in faidx_nseq()
552 const char *faidx_iseq(const faidx_t *fai, int i) in faidx_iseq()
557 int faidx_seq_len(const faidx_t *fai, const char *seq) in faidx_seq_len()
[all …]
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| /dports/biology/kallisto/kallisto-0.46.1/ext/htslib/ |
| H A D | faidx.c | 178 static int fai_save(const faidx_t *fai, hFILE *fp) { in fai_save()
199 faidx_t *fai; in fai_read() local
248 void fai_destroy(faidx_t *fai) in fai_destroy()
265 faidx_t *fai = NULL; in fai_build3() local
358 faidx_t *fai = NULL; in fai_load3() local
492 char *fai_fetch(const faidx_t *fai, const char *str, int *len) in fai_fetch()
578 int faidx_fetch_nseq(const faidx_t *fai) in faidx_fetch_nseq()
583 int faidx_nseq(const faidx_t *fai) in faidx_nseq()
588 const char *faidx_iseq(const faidx_t *fai, int i) in faidx_iseq()
593 int faidx_seq_len(const faidx_t *fai, const char *seq) in faidx_seq_len()
[all …]
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| /dports/biology/bedtools/bedtools2-2.30.0/src/utils/htslib/ |
| H A D | faidx.c | 324 static int fai_save(const faidx_t *fai, hFILE *fp) { in fai_save()
354 faidx_t *fai; in fai_read() local
420 void fai_destroy(faidx_t *fai) in fai_destroy()
438 faidx_t *fai = NULL; in fai_build3_core() local
545 faidx_t *fai = NULL; in fai_load3_core() local
813 char *fai_fetch(const faidx_t *fai, const char *str, int *len) in fai_fetch()
840 int faidx_fetch_nseq(const faidx_t *fai) in faidx_fetch_nseq()
845 int faidx_nseq(const faidx_t *fai) in faidx_nseq()
850 const char *faidx_iseq(const faidx_t *fai, int i) in faidx_iseq()
855 int faidx_seq_len(const faidx_t *fai, const char *seq) in faidx_seq_len()
[all …]
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| /dports/biology/ugene/ugene-40.1/src/libs_3rdparty/samtools/src/samtools/ |
| H A D | faidx.c | 135 void fai_save(const faidx_t *fai, FILE *fp) in fai_save()
157 faidx_t *fai; in fai_read() local
182 void fai_destroy(faidx_t *fai) in fai_destroy()
200 faidx_t *fai; in fai_build() local
269 faidx_t *fai; in fai_load() local
310 char *fai_fetch(const faidx_t *fai, const char *str, int *len) in fai_fetch()
384 faidx_t *fai; in faidx_main() local
403 int faidx_fetch_nseq(const faidx_t *fai) in faidx_fetch_nseq()
408 char *faidx_fetch_seq(const faidx_t *fai, char *c_name, int p_beg_i, int p_end_i, int *len) in faidx_fetch_seq()
|
| /dports/biology/stringtie/stringtie-2.1.1/samtools-0.1.18/ |
| H A D | faidx.c | 135 void fai_save(const faidx_t *fai, FILE *fp) in fai_save()
153 faidx_t *fai; in fai_read() local
178 void fai_destroy(faidx_t *fai) in fai_destroy()
193 faidx_t *fai; in fai_build() local
262 faidx_t *fai; in fai_load() local
303 char *fai_fetch(const faidx_t *fai, const char *str, int *len) in fai_fetch()
377 faidx_t *fai; in faidx_main() local
396 int faidx_fetch_nseq(const faidx_t *fai) in faidx_fetch_nseq()
401 char *faidx_fetch_seq(const faidx_t *fai, char *c_name, int p_beg_i, int p_end_i, int *len) in faidx_fetch_seq()
|
| /dports/biology/seqan1/seqan-1.3.1/lib/samtools/ |
| H A D | faidx.c | 137 void fai_save(const faidx_t *fai, FILE *fp) in fai_save()
155 faidx_t *fai; in fai_read() local
180 void fai_destroy(faidx_t *fai) in fai_destroy()
195 faidx_t *fai; in fai_build() local
264 faidx_t *fai; in fai_load() local
305 char *fai_fetch(const faidx_t *fai, const char *str, int *len) in fai_fetch()
367 faidx_t *fai; in faidx_main() local
386 int faidx_fetch_nseq(const faidx_t *fai) in faidx_fetch_nseq()
391 char *faidx_fetch_seq(const faidx_t *fai, char *c_name, int p_beg_i, int p_end_i, int *len) in faidx_fetch_seq()
|
| /dports/www/chromium-legacy/chromium-88.0.4324.182/third_party/llvm/clang/test/Sema/ |
| H A D | gnu-flags.c | 112 struct fai { struct
115 } fai = { 1, { 2, 3, 4 } }; argument
|
| /dports/devel/tinygo/tinygo-0.14.1/llvm-project/clang/test/Sema/ |
| H A D | gnu-flags.c | 112 struct fai { struct
115 } fai = { 1, { 2, 3, 4 } }; variable
|
| /dports/devel/wasi-libcxx/llvm-project-13.0.1.src/clang/test/Sema/ |
| H A D | gnu-flags.c | 112 struct fai { struct
115 } fai = { 1, { 2, 3, 4 } }; variable
|
| /dports/devel/llvm10/llvm-10.0.1.src/tools/clang/test/Sema/ |
| H A D | gnu-flags.c | 112 struct fai { struct
115 } fai = { 1, { 2, 3, 4 } }; argument
|
| /dports/devel/llvm12/llvm-project-12.0.1.src/clang/test/Sema/ |
| H A D | gnu-flags.c | 112 struct fai { struct
115 } fai = { 1, { 2, 3, 4 } }; argument
|
| /dports/devel/llvm11/llvm-11.0.1.src/tools/clang/test/Sema/ |
| H A D | gnu-flags.c | 112 struct fai { struct
115 } fai = { 1, { 2, 3, 4 } }; variable
|
| /dports/devel/llvm90/llvm-9.0.1.src/tools/clang/test/Sema/ |
| H A D | gnu-flags.c | 112 struct fai { struct
115 } fai = { 1, { 2, 3, 4 } }; argument
|
| /dports/devel/llvm-cheri/llvm-project-37c49ff00e3eadce5d8703fdc4497f28458c64a8/clang/test/Sema/ |
| H A D | gnu-flags.c | 112 struct fai { struct
115 } fai = { 1, { 2, 3, 4 } }; variable
|
| /dports/lang/rust/rustc-1.58.1-src/src/llvm-project/clang/test/Sema/ |
| H A D | gnu-flags.c | 112 struct fai { struct
115 } fai = { 1, { 2, 3, 4 } }; variable
|
| /dports/devel/llvm-devel/llvm-project-f05c95f10fc1d8171071735af8ad3a9e87633120/clang/test/Sema/ |
| H A D | gnu-flags.c | 112 struct fai { struct
115 } fai = { 1, { 2, 3, 4 } }; variable
|
| /dports/devel/wasi-compiler-rt13/llvm-project-13.0.1.src/clang/test/Sema/ |
| H A D | gnu-flags.c | 112 struct fai { struct
115 } fai = { 1, { 2, 3, 4 } }; argument
|
| /dports/devel/wasi-compiler-rt12/llvm-project-12.0.1.src/clang/test/Sema/ |
| H A D | gnu-flags.c | 112 struct fai { struct
115 } fai = { 1, { 2, 3, 4 } }; argument
|
| /dports/audio/ncspot/ncspot-0.9.3/cargo-crates/parking_lot_core-0.8.5/ |
| H A D | LICENSE-APACHE | 112 as part of the Derivative Works; within the Source form or
113 documentation, if provided along with the Derivative Works; or,
114 within a display generated by the Derivative Works, if and
115 wherever such third-party notices normally appear. The contents
|
| /dports/devel/llvm80/llvm-8.0.1.src/tools/clang/test/Sema/ |
| H A D | gnu-flags.c | 112 struct fai { struct
115 } fai = { 1, { 2, 3, 4 } }; argument
|
| /dports/devel/llvm70/llvm-7.0.1.src/tools/clang/test/Sema/ |
| H A D | gnu-flags.c | 112 struct fai { struct
115 } fai = { 1, { 2, 3, 4 } }; variable
|