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Searched defs:genome_size (Results 1 – 15 of 15) sorted by relevance

/dports/biology/bedtools/bedtools2-2.30.0/test/fisher/
H A Dsim.py12 genome_size = max(b[2] for b in bIntervals) + 50000 variable
/dports/biology/py-macs2/MACS-2.2.7.1/MACS2/
H A Dfilterdup_cmd.py86 def cal_max_dup_tags ( genome_size, tags_number, p=1e-5 ): argument
H A Dcallpeak_cmd.py334 def cal_max_dup_tags ( genome_size, tags_number, p=1e-5 ): argument
H A Ddiffpeak_cmd.py182 def cal_max_dup_tags ( genome_size, tags_number, p=1e-5 ): argument
/dports/biology/avida/avida-2.12.4-src/avida-core/source/main/
H A DcLandscape.cc306 const int genome_size = fitness_chart.GetNumRows(); in PredictWProcess() local
425 const int genome_size = fitness_chart.GetNumRows(); in PredictNuProcess() local
553 int genome_size = base_genome.GetSize(); in SampleProcess() local
587 int genome_size = base_genome.GetSize(); in RandomProcess() local
677 const int genome_size = base_genome.GetSize(); in TestPairs() local
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/algo/winmask/
H A Dwin_mask_gen_counts.hpp226 Uint8 genome_size; /**<\internal genome size in bases */ member in CWinMaskCountsGenerator
H A Dwin_mask_config.hpp649 Uint8 genome_size; /**< total size of the genome in bases */ member in CWinMaskConfig
/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/include/algo/winmask/
H A Dwin_mask_gen_counts.hpp226 Uint8 genome_size; /**<\internal genome size in bases */ member in CWinMaskCountsGenerator
H A Dwin_mask_config.hpp649 Uint8 genome_size; /**< total size of the genome in bases */ member in CWinMaskConfig
/dports/biology/viennarna/ViennaRNA-2.4.18/src/ViennaRNA/
H A Dsequence.h57 unsigned long long *genome_size; /* for MAF alignment coordinates */ member
H A Dsequence.c133 const unsigned long long *genome_size, in vrna_msa_add()
H A Dfold_compound.c288 const unsigned long long *genome_size, in vrna_fold_compound_comparative2()
/dports/biology/avida/avida-2.12.4-src/avida-core/source/cpu/
H A DcHardwareBase.cc152 const int genome_size = m_organism->GetGenome().GetSize(); in Divide_CheckViable() local
H A DcHardwareCPU.cc3425 int genome_size = m_world->GetConfig().MAX_GENOME_SIZE.Get(); in Inst_Kazi() local
3453 int genome_size = m_world->GetConfig().MAX_GENOME_SIZE.Get(); in Inst_Kazi5() local
/dports/biology/avida/avida-2.12.4-src/avida-core/source/analyze/
H A DcAnalyze.cc6817 const int genome_size = genotype->GetLength(); in AnalyzeInstructions() local
6902 const int genome_size = genotype->GetLength(); in AnalyzeInstPop() local