Name | Date | Size | #Lines | LOC | ||
---|---|---|---|---|---|---|
.. | 22-Apr-2021 | - | ||||
constraints/ | H | 22-Apr-2021 | - | 7,277 | 4,384 | |
datastructures/ | H | 22-Apr-2021 | - | 3,581 | 1,957 | |
io/ | H | 22-Apr-2021 | - | 2,852 | 1,672 | |
landscape/ | H | 22-Apr-2021 | - | 5,850 | 3,650 | |
loops/ | H | 22-Apr-2021 | - | 22,478 | 17,117 | |
params/ | H | 22-Apr-2021 | - | 44,717 | 41,061 | |
plotting/ | H | 22-Apr-2021 | - | 17,555 | 13,011 | |
search/ | H | 22-Apr-2021 | - | 462 | 236 | |
static/ | H | 03-May-2022 | - | 150,242 | 150,075 | |
utils/ | H | 22-Apr-2021 | - | 9,046 | 5,142 | |
2Dfold.c | H A D | 23-Nov-2020 | 150.2 KiB | 4,127 | 3,448 | |
2Dfold.h | H A D | 23-Nov-2020 | 14.5 KiB | 354 | 146 | |
2Dpfold.c | H A D | 23-Nov-2020 | 150.7 KiB | 4,375 | 3,655 | |
2Dpfold.h | H A D | 23-Nov-2020 | 17.1 KiB | 409 | 152 | |
LPfold.c | H A D | 24-Nov-2020 | 69 KiB | 2,426 | 1,850 | |
LPfold.h | H A D | 23-Nov-2020 | 7 KiB | 195 | 72 | |
Lfold.c | H A D | 23-Nov-2020 | 2.7 KiB | 141 | 79 | |
Lfold.h | H A D | 23-Nov-2020 | 2.1 KiB | 84 | 38 | |
MEA.c | H A D | 23-Nov-2020 | 12 KiB | 526 | 380 | |
MEA.h | H A D | 23-Nov-2020 | 4.3 KiB | 122 | 40 | |
Makefile.am | H A D | 22-Apr-2021 | 12.1 KiB | 497 | 433 | |
Makefile.in | H A D | 22-Apr-2021 | 104.7 KiB | 2,501 | 2,333 | |
PKplex.h | H A D | 22-Apr-2021 | 1.1 KiB | 43 | 28 | |
PS_dot.h | H A D | 23-Nov-2020 | 624 | 20 | 11 | |
ProfileAln.c | H A D | 23-Nov-2020 | 8.7 KiB | 345 | 260 | |
ProfileAln.h | H A D | 23-Nov-2020 | 391 | 17 | 11 | |
ProfileDist.c | H A D | 23-Nov-2020 | 7.6 KiB | 311 | 217 | |
RNAstruct.c | H A D | 23-Nov-2020 | 14.7 KiB | 657 | 525 | |
RNAstruct.h | H A D | 23-Nov-2020 | 5.4 KiB | 208 | 47 | |
ali_plex.c | H A D | 20-Apr-2021 | 62.3 KiB | 1,929 | 1,640 | |
ali_plex.h | H A D | 23-Nov-2020 | 1.7 KiB | 49 | 29 | |
alifold.c | H A D | 23-Nov-2020 | 6.2 KiB | 274 | 169 | |
alifold.h | H A D | 23-Nov-2020 | 10.7 KiB | 305 | 69 | |
alipfold.c | H A D | 23-Nov-2020 | 9.3 KiB | 322 | 213 | |
aln_util.h | H A D | 23-Nov-2020 | 503 | 18 | 9 | |
alphabet.c | H A D | 25-Nov-2020 | 12 KiB | 550 | 393 | |
alphabet.h | H A D | 20-Apr-2021 | 3.8 KiB | 154 | 64 | |
boltzmann_sampling.c | H A D | 22-Apr-2021 | 58 KiB | 1,889 | 1,493 | |
boltzmann_sampling.h | H A D | 23-Nov-2020 | 32.8 KiB | 700 | 64 | |
bs_wrappers.c | H A D | 23-Nov-2020 | 7.3 KiB | 305 | 203 | |
c_plex.c | H A D | 23-Nov-2020 | 59.1 KiB | 1,713 | 1,415 | |
centroid.c | H A D | 23-Nov-2020 | 6 KiB | 229 | 147 | |
centroid.h | H A D | 23-Nov-2020 | 4.3 KiB | 113 | 38 | |
char_stream.h | H A D | 23-Nov-2020 | 585 | 18 | 9 | |
cofold.c | H A D | 22-Apr-2021 | 36.7 KiB | 1,379 | 1,010 | |
cofold.h | H A D | 23-Nov-2020 | 6.8 KiB | 182 | 56 | |
color_output.inc | H A D | 23-Nov-2020 | 12.9 KiB | 550 | 471 | |
combinatorics.c | H A D | 19-Apr-2021 | 19.3 KiB | 702 | 436 | |
combinatorics.h | H A D | 19-Apr-2021 | 9.3 KiB | 210 | 25 | |
commands.c | H A D | 23-Nov-2020 | 25.1 KiB | 930 | 710 | |
commands.h | H A D | 23-Nov-2020 | 3.8 KiB | 121 | 28 | |
concentrations.c | H A D | 19-Apr-2021 | 5.2 KiB | 161 | 96 | |
concentrations.h | H A D | 19-Apr-2021 | 4.6 KiB | 127 | 44 | |
constraints.h | H A D | 23-Nov-2020 | 670 | 22 | 13 | |
constraints_SHAPE.h | H A D | 23-Nov-2020 | 531 | 18 | 9 | |
constraints_hard.h | H A D | 23-Nov-2020 | 523 | 18 | 9 | |
constraints_ligand.h | H A D | 23-Nov-2020 | 539 | 18 | 9 | |
constraints_soft.h | H A D | 23-Nov-2020 | 523 | 18 | 9 | |
convert_epars.h | H A D | 23-Nov-2020 | 515 | 18 | 9 | |
data_structures.h | H A D | 23-Nov-2020 | 545 | 18 | 9 | |
data_structures_nonred.inc | H A D | 23-Nov-2020 | 33.2 KiB | 1,178 | 969 | |
dist_vars.c | H A D | 23-Nov-2020 | 275 | 9 | 3 | |
dist_vars.h | H A D | 23-Nov-2020 | 1.4 KiB | 65 | 24 | |
dp_matrices.c | H A D | 20-Apr-2021 | 47.9 KiB | 1,738 | 1,361 | |
dp_matrices.h | H A D | 25-Nov-2020 | 11.2 KiB | 439 | 231 | |
duplex.c | H A D | 25-Nov-2020 | 19.2 KiB | 783 | 591 | |
duplex.h | H A D | 25-Nov-2020 | 791 | 38 | 18 | |
edit_cost.h | H A D | 18-Dec-2018 | 3.2 KiB | 54 | 32 | |
energy_const.h | H A D | 23-Nov-2020 | 525 | 18 | 9 | |
energy_par.h | H A D | 23-Nov-2020 | 509 | 18 | 9 | |
equilibrium_probs.c | H A D | 22-Apr-2021 | 139.2 KiB | 4,381 | 3,429 | |
equilibrium_probs.h | H A D | 22-Apr-2021 | 10.1 KiB | 285 | 41 | |
eval.c | H A D | 22-Apr-2021 | 71.4 KiB | 2,377 | 1,764 | |
eval.h | H A D | 23-Nov-2020 | 54.8 KiB | 1,296 | 249 | |
eval_wrappers.c | H A D | 23-Nov-2020 | 23.4 KiB | 914 | 642 | |
exterior_loops.h | H A D | 23-Nov-2020 | 517 | 18 | 9 | |
file_formats.h | H A D | 23-Nov-2020 | 556 | 19 | 10 | |
file_formats_msa.h | H A D | 23-Nov-2020 | 545 | 18 | 9 | |
file_utils.h | H A D | 23-Nov-2020 | 477 | 18 | 9 | |
findpath.h | H A D | 23-Nov-2020 | 509 | 18 | 9 | |
fold.c | H A D | 23-Nov-2020 | 15.8 KiB | 637 | 451 | |
fold.h | H A D | 23-Nov-2020 | 9.3 KiB | 278 | 102 | |
fold_compound.c | H A D | 22-Apr-2021 | 25.5 KiB | 958 | 672 | |
fold_compound.h | H A D | 20-Apr-2021 | 26.1 KiB | 562 | 138 | |
fold_vars.h | H A D | 23-Nov-2020 | 2.1 KiB | 87 | 16 | |
gquad.c | H A D | 20-Apr-2021 | 47 KiB | 1,872 | 1,428 | |
gquad.h | H A D | 20-Apr-2021 | 44 KiB | 1,747 | 1,358 | |
grammar.c | H A D | 22-Apr-2021 | 4.4 KiB | 285 | 197 | |
grammar.h | H A D | 23-Nov-2020 | 3.8 KiB | 148 | 79 | |
hairpin_loops.h | H A D | 23-Nov-2020 | 509 | 18 | 9 | |
heat_capacity.c | H A D | 20-Apr-2021 | 5.8 KiB | 230 | 164 | |
heat_capacity.h | H A D | 20-Apr-2021 | 7.9 KiB | 186 | 33 | |
interior_loops.h | H A D | 23-Nov-2020 | 517 | 18 | 9 | |
inverse.c | H A D | 23-Nov-2020 | 15.8 KiB | 679 | 522 | |
inverse.h | H A D | 23-Nov-2020 | 2.3 KiB | 68 | 11 | |
list.h | H A D | 23-Nov-2020 | 533 | 18 | 9 | |
loop_energies.h | H A D | 23-Nov-2020 | 485 | 18 | 9 | |
mfe.c | H A D | 20-Apr-2021 | 52 KiB | 1,853 | 1,363 | |
mfe.h | H A D | 20-Apr-2021 | 11.8 KiB | 310 | 42 | |
mfe_window.c | H A D | 22-Apr-2021 | 55.4 KiB | 2,008 | 1,449 | |
mfe_window.h | H A D | 20-Apr-2021 | 10.2 KiB | 264 | 68 | |
mfe_window_wrappers.c | H A D | 23-Nov-2020 | 3.6 KiB | 172 | 112 | |
mfe_wrappers.c | H A D | 25-Nov-2020 | 2.2 KiB | 119 | 77 | |
mm.c | H A D | 23-Nov-2020 | 5.3 KiB | 195 | 148 | |
mm.h | H A D | 23-Nov-2020 | 807 | 43 | 19 | |
model.c | H A D | 23-Nov-2020 | 23.7 KiB | 1,018 | 741 | |
model.h | H A D | 23-Nov-2020 | 33.9 KiB | 927 | 202 | |
move_set.c | H A D | 23-Nov-2020 | 27 KiB | 1,107 | 786 | |
move_set.h | H A D | 23-Nov-2020 | 3.2 KiB | 95 | 53 | |
multibranch_loops.h | H A D | 23-Nov-2020 | 541 | 18 | 9 | |
naview.h | H A D | 23-Nov-2020 | 499 | 18 | 9 | |
neighbor.h | H A D | 23-Nov-2020 | 547 | 19 | 10 | |
pair_mat.h | H A D | 23-Nov-2020 | 4.5 KiB | 187 | 149 | |
params.h | H A D | 23-Nov-2020 | 477 | 18 | 9 | |
part_func.c | H A D | 22-Apr-2021 | 22.9 KiB | 833 | 590 | |
part_func.h | H A D | 19-Apr-2021 | 31.2 KiB | 737 | 132 | |
part_func_co.c | H A D | 23-Nov-2020 | 9.6 KiB | 390 | 254 | |
part_func_co.h | H A D | 23-Nov-2020 | 9.1 KiB | 253 | 56 | |
part_func_up.c | H A D | 23-Nov-2020 | 52.9 KiB | 1,738 | 1,170 | |
part_func_up.h | H A D | 23-Nov-2020 | 5.3 KiB | 153 | 33 | |
part_func_window.h | H A D | 23-Nov-2020 | 13.5 KiB | 348 | 51 | |
part_func_wrappers.c | H A D | 23-Nov-2020 | 5.3 KiB | 211 | 145 | |
perturbation_fold.c | H A D | 23-Nov-2020 | 18.2 KiB | 581 | 445 | |
perturbation_fold.h | H A D | 23-Nov-2020 | 7.6 KiB | 155 | 28 | |
pf_fold.c | H A D | 23-Nov-2020 | 15.5 KiB | 604 | 420 | |
pk_plex.h | H A D | 22-Apr-2021 | 8.1 KiB | 188 | 43 | |
plex.c | H A D | 23-Nov-2020 | 143.3 KiB | 4,503 | 3,485 | |
plex.h | H A D | 23-Nov-2020 | 2.8 KiB | 84 | 57 | |
plex_functions.c | H A D | 22-Apr-2021 | 25.3 KiB | 879 | 617 | |
plot_aln.h | H A D | 23-Nov-2020 | 513 | 18 | 9 | |
plot_layouts.h | H A D | 23-Nov-2020 | 517 | 18 | 9 | |
plot_structure.h | H A D | 23-Nov-2020 | 537 | 18 | 9 | |
plot_utils.h | H A D | 23-Nov-2020 | 501 | 18 | 9 | |
profiledist.h | H A D | 23-Nov-2020 | 1.8 KiB | 74 | 25 | |
read_epars.h | H A D | 23-Nov-2020 | 479 | 18 | 9 | |
ribo.c | H A D | 23-Nov-2020 | 84.9 KiB | 1,379 | 1,359 | |
ribo.h | H A D | 23-Nov-2020 | 694 | 40 | 9 | |
sequence.c | H A D | 19-Apr-2021 | 17.2 KiB | 561 | 404 | |
sequence.h | H A D | 23-Nov-2020 | 2.8 KiB | 108 | 57 | |
snofold.c | H A D | 20-Apr-2021 | 39.8 KiB | 1,380 | 969 | |
snofold.h | H A D | 23-Nov-2020 | 2 KiB | 83 | 44 | |
snoop.c | H A D | 23-Nov-2020 | 116.4 KiB | 3,737 | 3,105 | |
snoop.h | H A D | 23-Nov-2020 | 10.3 KiB | 295 | 223 | |
special_const.c | H A D | 23-Nov-2020 | 40 KiB | 587 | 577 | |
special_const.h | H A D | 23-Nov-2020 | 402 | 15 | 14 | |
stream_output.h | H A D | 23-Nov-2020 | 601 | 18 | 9 | |
string_utils.h | H A D | 23-Nov-2020 | 505 | 18 | 9 | |
stringdist.c | H A D | 23-Nov-2020 | 11.7 KiB | 558 | 426 | |
stringdist.h | H A D | 18-Dec-2018 | 571 | 31 | 7 | |
structure_utils.h | H A D | 23-Nov-2020 | 529 | 18 | 9 | |
structured_domains.h | H A D | 23-Nov-2020 | 859 | 31 | 7 | |
subopt.c | H A D | 20-Apr-2021 | 68.7 KiB | 2,446 | 1,732 | |
subopt.h | H A D | 25-Nov-2020 | 9.4 KiB | 309 | 58 | |
svm_utils.h | H A D | 23-Nov-2020 | 477 | 18 | 9 | |
treedist.c | H A D | 23-Nov-2020 | 17.1 KiB | 812 | 575 | |
treedist.h | H A D | 23-Nov-2020 | 814 | 47 | 9 | |
ugly_bt.c | H A D | 22-Apr-2021 | 20.3 KiB | 847 | 691 | |
ugly_bt.h | H A D | 22-Apr-2021 | 40 | 2 | 1 | |
units.h | H A D | 20-Apr-2021 | 469 | 18 | 9 | |
unstructured_domains.c | H A D | 23-Nov-2020 | 78.5 KiB | 2,787 | 2,070 | |
unstructured_domains.h | H A D | 17-Feb-2021 | 22.5 KiB | 503 | 103 | |
utils.h | H A D | 23-Nov-2020 | 610 | 22 | 13 | |
vrna_config.h.in | H A D | 23-Nov-2020 | 1.7 KiB | 89 | 75 | |
walk.h | H A D | 23-Nov-2020 | 519 | 19 | 10 | |
zscore.c | H A D | 20-Apr-2021 | 5.2 KiB | 202 | 156 | |
zscore.h | H A D | 20-Apr-2021 | 1.1 KiB | 45 | 29 | |
zscore_dat.inc | H A D | 20-Apr-2021 | 280 | 11 | 10 |