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818top_srcdir = @top_srcdir@ 819AUTOMAKE_OPTIONS = subdir-objects 820SUBDIRS = static 821vrna_constraintsdir = $(pkgincludedir)/constraints 822vrna_paramsdir = $(pkgincludedir)/params 823vrna_utilsdir = $(pkgincludedir)/utils 824vrna_iodir = $(pkgincludedir)/io 825vrna_searchdir = $(pkgincludedir)/search 826vrna_plottingdir = $(pkgincludedir)/plotting 827vrna_puzzlerdir = $(pkgincludedir)/plotting/RNApuzzler 828vrna_loopsdir = $(pkgincludedir)/loops 829vrna_datastructuresdir = $(pkgincludedir)/datastructures 830vrna_landscapedir = $(pkgincludedir)/landscape 831 832# the library names to build 833lib_LTLIBRARIES = libRNA.la 834 835# convenience library 836noinst_LTLIBRARIES = libRNA_conv.la libRNA_constraints.la \ 837 libRNA_datastructures.la libRNA_utils.la libRNA_plotting.la \ 838 libRNA_params.la libRNA_loops.la libRNA_eval.la \ 839 libRNA_landscape.la libRNA_special_const.la $(am__append_1) \ 840 $(am__append_3) 841 842# where to install the headers on the system 843libRNA_ladir = $(includedir)/ViennaRNA 844libRNA_la_SOURCES = 845 846# ldflags to avoid version information 847libRNA_la_LIBADD = libRNA_conv.la 848libRNA_la_LDFLAGS = -avoid-version -static $(LTO_LDFLAGS) $(PTHREAD_LIBS) 849libRNA_conv_la_LIBADD = libRNA_constraints.la libRNA_datastructures.la \ 850 libRNA_utils.la libRNA_plotting.la libRNA_params.la \ 851 libRNA_eval.la libRNA_loops.la libRNA_landscape.la \ 852 $(am__append_2) $(am__append_4) 853@VRNA_AM_SWITCH_SIMD_SSE41_TRUE@libRNA_utils_sse41_la_CFLAGS = $(SIMD_SSE41_FLAGS) 854@VRNA_AM_SWITCH_SIMD_AVX512_TRUE@libRNA_utils_avx512_la_CFLAGS = $(SIMD_AVX512_FLAGS) 855@VRNA_AM_SWITCH_SVM_FALSE@nodist_EXTRA_libRNA_la_SOURCES = 856 857# Dummy C++ source to cause C++ linking. 858@VRNA_AM_SWITCH_SVM_TRUE@nodist_EXTRA_libRNA_la_SOURCES = dummy.cxx 859@VRNA_AM_SWITCH_SVM_TRUE@SVM_SRC = ../@LIBSVM_DIR@/svm.cpp 860@VRNA_AM_SWITCH_SVM_TRUE@SVM_INC = -I$(top_srcdir)/src/@LIBSVM_DIR@ 861@VRNA_AM_SWITCH_SVM_TRUE@SVM_H = ../@LIBSVM_DIR@/svm.h 862@VRNA_AM_SWITCH_SVM_TRUE@SVM_UTILS = utils/svm_utils.c 863@VRNA_AM_SWITCH_SVM_TRUE@SVM_UTILS_H = utils/svm.h 864@VRNA_AM_SWITCH_SVM_TRUE@SVM_UTILS_H_OLD = svm_utils.h 865@VRNA_AM_SWITCH_JSON_TRUE@JSON_SRC = ../json/json.c 866@VRNA_AM_SWITCH_JSON_TRUE@JSON_H = ../json/json.h 867@VRNA_AM_SWITCH_JSON_TRUE@JSON_INC = -I$(top_srcdir)/src/json 868pkginclude_HEADERS = pair_mat.h RNAstruct.h dist_vars.h mfe.h \ 869 mfe_window.h fold.h part_func.h part_func_window.h \ 870 stringdist.h edit_cost.h fold_vars.h profiledist.h treedist.h \ 871 inverse.h subopt.h cofold.h duplex.h alifold.h part_func_co.h \ 872 concentrations.h ProfileAln.h LPfold.h Lfold.h part_func_up.h \ 873 ribo.h findpath.h data_structures.h char_stream.h \ 874 stream_output.h fold_compound.h MEA.h mm.h loop_energies.h \ 875 exterior_loops.h hairpin_loops.h interior_loops.h \ 876 multibranch_loops.h 2Dfold.h 2Dpfold.h PKplex.h pk_plex.h \ 877 ali_plex.h plex.h snofold.h snoop.h move_set.h gquad.h \ 878 constraints.h eval.h perturbation_fold.h centroid.h utils.h \ 879 structure_utils.h string_utils.h aln_util.h model.h \ 880 dp_matrices.h PS_dot.h plot_structure.h plot_aln.h \ 881 plot_utils.h plot_layouts.h naview.h boltzmann_sampling.h \ 882 equilibrium_probs.h constraints_ligand.h constraints_SHAPE.h \ 883 constraints_hard.h constraints_soft.h alphabet.h sequence.h \ 884 grammar.h structured_domains.h unstructured_domains.h \ 885 file_utils.h file_formats.h file_formats_msa.h energy_par.h \ 886 energy_const.h params.h read_epars.h convert_epars.h \ 887 commands.h units.h combinatorics.h neighbor.h walk.h \ 888 heat_capacity.h ${SVM_UTILS_H_OLD} ${SVM_H} ${JSON_H} \ 889 $(am__append_5) 890vrna_constraints_HEADERS = \ 891 constraints/basic.h \ 892 constraints/ligand.h \ 893 constraints/SHAPE.h \ 894 constraints/hard.h \ 895 constraints/soft.h 896 897vrna_loops_HEADERS = \ 898 loops/all.h \ 899 loops/external.h \ 900 loops/hairpin.h \ 901 loops/internal.h \ 902 loops/multibranch.h 903 904vrna_utils_HEADERS = \ 905 utils/basic.h \ 906 utils/strings.h \ 907 utils/structures.h \ 908 utils/alignments.h \ 909 utils/higher_order_functions.h \ 910 utils/cpu.h \ 911 utils/units.h \ 912 ${SVM_UTILS_H} 913 914vrna_search_HEADERS = \ 915 search/BoyerMoore.h 916 917vrna_plotting_HEADERS = \ 918 plotting/alignments.h \ 919 plotting/layouts.h \ 920 plotting/probabilities.h \ 921 plotting/structures.h \ 922 plotting/utils.h \ 923 plotting/naview.h 924 925vrna_puzzler_HEADERS = \ 926 plotting/RNApuzzler/RNApuzzler.h \ 927 plotting/RNApuzzler/RNAturtle.h 928 929vrna_io_HEADERS = \ 930 io/utils.h \ 931 io/file_formats.h \ 932 io/file_formats_msa.h 933 934vrna_params_HEADERS = \ 935 params/default.h \ 936 params/constants.h \ 937 params/basic.h \ 938 params/io.h \ 939 params/convert.h 940 941vrna_datastructures_HEADERS = \ 942 datastructures/basic.h \ 943 datastructures/lists.h \ 944 datastructures/char_stream.h \ 945 datastructures/stream_output.h \ 946 datastructures/hash_tables.h \ 947 datastructures/heap.h 948 949vrna_landscape_HEADERS = \ 950 landscape/paths.h \ 951 landscape/findpath.h \ 952 landscape/neighbor.h \ 953 landscape/walk.h \ 954 landscape/move.h 955 956libRNA_conv_la_SOURCES = fold_compound.c dist_vars.c part_func.c \ 957 part_func_wrappers.c pf_fold.c treedist.c inverse.c \ 958 ProfileDist.c RNAstruct.c mfe.c mfe_window.c mfe_wrappers.c \ 959 mfe_window_wrappers.c fold.c stringdist.c subopt.c Lfold.c \ 960 cofold.c part_func_co.c concentrations.c ProfileAln.c duplex.c \ 961 alifold.c alipfold.c LPfold.c part_func_up.c ribo.c MEA.c mm.c \ 962 2Dfold.c 2Dpfold.c plex_functions.c ali_plex.c c_plex.c plex.c \ 963 snofold.c snoop.c gquad.c perturbation_fold.c centroid.c \ 964 model.c dp_matrices.c boltzmann_sampling.c bs_wrappers.c \ 965 equilibrium_probs.c ${SVM_SRC} ${JSON_SRC} alphabet.c \ 966 sequence.c unstructured_domains.c grammar.c heat_capacity.c \ 967 $(am__append_6) 968libRNA_eval_la_SOURCES = \ 969 eval.c \ 970 eval_wrappers.c 971 972libRNA_constraints_la_SOURCES = \ 973 constraints/constraints.c \ 974 constraints/SHAPE.c \ 975 constraints/hard.c \ 976 constraints/soft.c \ 977 constraints/ligand.c 978 979libRNA_utils_la_SOURCES = \ 980 utils/utils.c \ 981 utils/string_utils.c \ 982 utils/structure_utils.c \ 983 utils/structure_tree.c \ 984 utils/msa_utils.c \ 985 utils/higher_order_functions.c \ 986 utils/cpu.c \ 987 utils/units.c \ 988 io/io_utils.c \ 989 io/file_formats.c \ 990 io/file_formats_msa.c \ 991 search/BoyerMoore.c \ 992 commands.c \ 993 combinatorics.c \ 994 ${SVM_UTILS} 995 996@VRNA_AM_SWITCH_SIMD_SSE41_TRUE@libRNA_utils_sse41_la_SOURCES = \ 997@VRNA_AM_SWITCH_SIMD_SSE41_TRUE@ utils/higher_order_functions_sse41.c 998 999@VRNA_AM_SWITCH_SIMD_AVX512_TRUE@libRNA_utils_avx512_la_SOURCES = \ 1000@VRNA_AM_SWITCH_SIMD_AVX512_TRUE@ utils/higher_order_functions_avx512.c 1001 1002libRNA_plotting_la_SOURCES = \ 1003 plotting/alignments.c \ 1004 plotting/layouts.c \ 1005 plotting/probabilities.c \ 1006 plotting/structures.c \ 1007 plotting/plot_utils.c \ 1008 plotting/naview.c \ 1009 plotting/RNApuzzler/RNApuzzler.c \ 1010 plotting/RNApuzzler/RNAturtle.c 1011 1012libRNA_loops_la_SOURCES = \ 1013 loops/external.c \ 1014 loops/external_bt.c \ 1015 loops/external_pf.c \ 1016 loops/hairpin.c \ 1017 loops/hairpin_bt.c \ 1018 loops/hairpin_pf.c \ 1019 loops/internal.c \ 1020 loops/internal_bt.c \ 1021 loops/internal_pf.c \ 1022 loops/multibranch.c \ 1023 loops/multibranch_bt.c \ 1024 loops/multibranch_pf.c 1025 1026libRNA_params_la_SOURCES = \ 1027 params/io.c \ 1028 params/default.c \ 1029 params/params.c \ 1030 params/convert.c 1031 1032libRNA_datastructures_la_SOURCES = \ 1033 datastructures/basic_datastructures.c \ 1034 datastructures/lists.c \ 1035 datastructures/char_stream.c \ 1036 datastructures/stream_output.c \ 1037 datastructures/hash_tables.c \ 1038 datastructures/heap.c 1039 1040libRNA_landscape_la_SOURCES = \ 1041 move_set.c \ 1042 landscape/move.c \ 1043 landscape/findpath.c \ 1044 landscape/neighbor.c \ 1045 landscape/walk.c 1046 1047libRNA_special_const_la_SOURCES = \ 1048 special_const.c \ 1049 ugly_bt.c 1050 1051RNAPUZZLER_H = \ 1052 plotting/RNApuzzler/headers/AABB_struct.h \ 1053 plotting/RNApuzzler/headers/boundingBoxes_struct.h \ 1054 plotting/RNApuzzler/headers/configArc_struct.h \ 1055 plotting/RNApuzzler/headers/config_struct.h \ 1056 plotting/RNApuzzler/headers/configtree_struct.h \ 1057 plotting/RNApuzzler/headers/tBaseInformation_struct.h 1058 1059RNAPUZZLER_INC = \ 1060 plotting/RNApuzzler/includes/coordinates.inc \ 1061 plotting/RNApuzzler/includes/definitions.inc \ 1062 plotting/RNApuzzler/includes/vector_math.inc \ 1063 plotting/RNApuzzler/includes/boundingBoxes.inc \ 1064 plotting/RNApuzzler/includes/configtree.inc \ 1065 plotting/RNApuzzler/includes/drawingconfig.inc \ 1066 plotting/RNApuzzler/includes/intersectLevelBoundingBoxes.inc \ 1067 plotting/RNApuzzler/includes/intersectLevelLines.inc \ 1068 plotting/RNApuzzler/includes/intersectLevelTreeNodes.inc \ 1069 plotting/RNApuzzler/includes/postscriptArcs.inc \ 1070 plotting/RNApuzzler/includes/boundingWedge.inc \ 1071 plotting/RNApuzzler/includes/calcDeltas.inc \ 1072 plotting/RNApuzzler/includes/handleAncestorIntersections.inc \ 1073 plotting/RNApuzzler/includes/handleConfigChanges.inc \ 1074 plotting/RNApuzzler/includes/handleSiblingIntersections.inc \ 1075 plotting/RNApuzzler/includes/intersectionType.inc \ 1076 plotting/RNApuzzler/includes/optimize.inc \ 1077 plotting/RNApuzzler/includes/resolveExteriorChildIntersections.inc \ 1078 plotting/RNApuzzler/includes/resolveIntersections.inc \ 1079 plotting/RNApuzzler/includes/rotationAngle.inc \ 1080 plotting/RNApuzzler/includes/svgArcs.inc 1081 1082noinst_HEADERS = params/intl11.h \ 1083 params/intl11dH.h \ 1084 params/intl21.h \ 1085 params/intl21dH.h \ 1086 params/intl22.h \ 1087 params/intl22dH.h \ 1088 params/1.8.4_epars.h \ 1089 params/1.8.4_intloops.h \ 1090 ${RNAPUZZLER_H} \ 1091 list.h \ 1092 ${SVM_H} \ 1093 ${JSON_H}\ 1094 special_const.h \ 1095 ugly_bt.h 1096 1097nodist_pkginclude_HEADERS = vrna_config.h 1098EXTRA_DIST = $(pkginclude_HEADERS) constraints/hc_depot.inc \ 1099 loops/external_hc.inc loops/external_sc.inc \ 1100 loops/external_sc_pf.inc loops/hairpin_hc.inc \ 1101 loops/hairpin_sc.inc loops/hairpin_sc_pf.inc \ 1102 loops/internal_hc.inc loops/internal_sc.inc \ 1103 loops/internal_sc_pf.inc loops/multibranch_hc.inc \ 1104 loops/multibranch_sc.inc loops/multibranch_sc_pf.inc \ 1105 params/svm_model_avg.inc params/svm_model_sd.inc \ 1106 data_structures_nonred.inc plotting/ps_helpers.inc \ 1107 plotting/svg_helpers.inc ${RNAPUZZLER_INC} \ 1108 landscape/local_neighbors.inc ${SVM_H} ${JSON_H} \ 1109 color_output.inc special_const.h ugly_bt.h $(am__append_7) 1110all: all-recursive 1111 1112.SUFFIXES: 1113.SUFFIXES: .c .cpp .cxx .lo .o .obj 1114$(srcdir)/Makefile.in: $(srcdir)/Makefile.am $(am__configure_deps) 1115 @for dep in $?; do \ 1116 case '$(am__configure_deps)' in \ 1117 *$$dep*) \ 1118 ( cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh ) \ 1119 && { if test -f $@; then exit 0; else break; fi; }; \ 1120 exit 1;; \ 1121 esac; \ 1122 done; \ 1123 echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnu src/ViennaRNA/Makefile'; \ 1124 $(am__cd) $(top_srcdir) && \ 1125 $(AUTOMAKE) --gnu src/ViennaRNA/Makefile 1126Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status 1127 @case '$?' in \ 1128 *config.status*) \ 1129 cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh;; \ 1130 *) \ 1131 echo ' cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__maybe_remake_depfiles)'; \ 1132 cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__maybe_remake_depfiles);; \ 1133 esac; 1134 1135$(top_builddir)/config.status: $(top_srcdir)/configure $(CONFIG_STATUS_DEPENDENCIES) 1136 cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh 1137 1138$(top_srcdir)/configure: $(am__configure_deps) 1139 cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh 1140$(ACLOCAL_M4): $(am__aclocal_m4_deps) 1141 cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh 1142$(am__aclocal_m4_deps): 1143vrna_config.h: $(top_builddir)/config.status $(srcdir)/vrna_config.h.in 1144 cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ 1145 1146install-libLTLIBRARIES: $(lib_LTLIBRARIES) 1147 @$(NORMAL_INSTALL) 1148 @list='$(lib_LTLIBRARIES)'; test -n "$(libdir)" || list=; \ 1149 list2=; for p in $$list; do \ 1150 if test -f $$p; then \ 1151 list2="$$list2 $$p"; \ 1152 else :; fi; \ 1153 done; \ 1154 test -z "$$list2" || { \ 1155 echo " $(MKDIR_P) '$(DESTDIR)$(libdir)'"; \ 1156 $(MKDIR_P) "$(DESTDIR)$(libdir)" || exit 1; \ 1157 echo " $(LIBTOOL) $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=install $(INSTALL) $(INSTALL_STRIP_FLAG) $$list2 '$(DESTDIR)$(libdir)'"; \ 1158 $(LIBTOOL) $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=install $(INSTALL) $(INSTALL_STRIP_FLAG) $$list2 "$(DESTDIR)$(libdir)"; \ 1159 } 1160 1161uninstall-libLTLIBRARIES: 1162 @$(NORMAL_UNINSTALL) 1163 @list='$(lib_LTLIBRARIES)'; test -n "$(libdir)" || list=; \ 1164 for p in $$list; do \ 1165 $(am__strip_dir) \ 1166 echo " $(LIBTOOL) $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=uninstall rm -f '$(DESTDIR)$(libdir)/$$f'"; \ 1167 $(LIBTOOL) $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=uninstall rm -f "$(DESTDIR)$(libdir)/$$f"; \ 1168 done 1169 1170clean-libLTLIBRARIES: 1171 -test -z "$(lib_LTLIBRARIES)" || rm -f $(lib_LTLIBRARIES) 1172 @list='$(lib_LTLIBRARIES)'; \ 1173 locs=`for p in $$list; do echo $$p; done | \ 1174 sed 's|^[^/]*$$|.|; s|/[^/]*$$||; s|$$|/so_locations|' | \ 1175 sort -u`; \ 1176 test -z "$$locs" || { \ 1177 echo rm -f $${locs}; \ 1178 rm -f $${locs}; \ 1179 } 1180 1181clean-noinstLTLIBRARIES: 1182 -test -z "$(noinst_LTLIBRARIES)" || rm -f $(noinst_LTLIBRARIES) 1183 @list='$(noinst_LTLIBRARIES)'; \ 1184 locs=`for p in $$list; do echo $$p; done | \ 1185 sed 's|^[^/]*$$|.|; s|/[^/]*$$||; s|$$|/so_locations|' 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1249datastructures/heap.lo: datastructures/$(am__dirstamp) \ 1250 datastructures/$(DEPDIR)/$(am__dirstamp) 1251 1252libRNA_datastructures.la: $(libRNA_datastructures_la_OBJECTS) $(libRNA_datastructures_la_DEPENDENCIES) $(EXTRA_libRNA_datastructures_la_DEPENDENCIES) 1253 $(AM_V_CCLD)$(LINK) $(libRNA_datastructures_la_OBJECTS) $(libRNA_datastructures_la_LIBADD) $(LIBS) 1254 1255libRNA_eval.la: $(libRNA_eval_la_OBJECTS) $(libRNA_eval_la_DEPENDENCIES) $(EXTRA_libRNA_eval_la_DEPENDENCIES) 1256 $(AM_V_CCLD)$(LINK) $(libRNA_eval_la_OBJECTS) $(libRNA_eval_la_LIBADD) $(LIBS) 1257landscape/$(am__dirstamp): 1258 @$(MKDIR_P) landscape 1259 @: > landscape/$(am__dirstamp) 1260landscape/$(DEPDIR)/$(am__dirstamp): 1261 @$(MKDIR_P) landscape/$(DEPDIR) 1262 @: > landscape/$(DEPDIR)/$(am__dirstamp) 1263landscape/move.lo: landscape/$(am__dirstamp) \ 1264 landscape/$(DEPDIR)/$(am__dirstamp) 1265landscape/findpath.lo: landscape/$(am__dirstamp) \ 1266 landscape/$(DEPDIR)/$(am__dirstamp) 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./$(DEPDIR)/snofold.Plo 2363 -rm -f ./$(DEPDIR)/snoop.Plo 2364 -rm -f ./$(DEPDIR)/special_const.Plo 2365 -rm -f ./$(DEPDIR)/stringdist.Plo 2366 -rm -f ./$(DEPDIR)/subopt.Plo 2367 -rm -f ./$(DEPDIR)/treedist.Plo 2368 -rm -f ./$(DEPDIR)/ugly_bt.Plo 2369 -rm -f ./$(DEPDIR)/unstructured_domains.Plo 2370 -rm -f ./$(DEPDIR)/zscore.Plo 2371 -rm -f constraints/$(DEPDIR)/SHAPE.Plo 2372 -rm -f constraints/$(DEPDIR)/constraints.Plo 2373 -rm -f constraints/$(DEPDIR)/hard.Plo 2374 -rm -f constraints/$(DEPDIR)/ligand.Plo 2375 -rm -f constraints/$(DEPDIR)/soft.Plo 2376 -rm -f datastructures/$(DEPDIR)/basic_datastructures.Plo 2377 -rm -f datastructures/$(DEPDIR)/char_stream.Plo 2378 -rm -f datastructures/$(DEPDIR)/hash_tables.Plo 2379 -rm -f datastructures/$(DEPDIR)/heap.Plo 2380 -rm -f datastructures/$(DEPDIR)/lists.Plo 2381 -rm -f datastructures/$(DEPDIR)/stream_output.Plo 2382 -rm -f io/$(DEPDIR)/file_formats.Plo 2383 -rm -f io/$(DEPDIR)/file_formats_msa.Plo 2384 -rm -f io/$(DEPDIR)/io_utils.Plo 2385 -rm -f landscape/$(DEPDIR)/findpath.Plo 2386 -rm -f landscape/$(DEPDIR)/move.Plo 2387 -rm -f landscape/$(DEPDIR)/neighbor.Plo 2388 -rm -f landscape/$(DEPDIR)/walk.Plo 2389 -rm -f loops/$(DEPDIR)/external.Plo 2390 -rm -f loops/$(DEPDIR)/external_bt.Plo 2391 -rm -f loops/$(DEPDIR)/external_pf.Plo 2392 -rm -f loops/$(DEPDIR)/hairpin.Plo 2393 -rm -f loops/$(DEPDIR)/hairpin_bt.Plo 2394 -rm -f loops/$(DEPDIR)/hairpin_pf.Plo 2395 -rm -f loops/$(DEPDIR)/internal.Plo 2396 -rm -f loops/$(DEPDIR)/internal_bt.Plo 2397 -rm -f loops/$(DEPDIR)/internal_pf.Plo 2398 -rm -f loops/$(DEPDIR)/multibranch.Plo 2399 -rm -f loops/$(DEPDIR)/multibranch_bt.Plo 2400 -rm -f loops/$(DEPDIR)/multibranch_pf.Plo 2401 -rm -f params/$(DEPDIR)/convert.Plo 2402 -rm -f params/$(DEPDIR)/default.Plo 2403 -rm -f params/$(DEPDIR)/io.Plo 2404 -rm -f params/$(DEPDIR)/params.Plo 2405 -rm -f plotting/$(DEPDIR)/alignments.Plo 2406 -rm -f plotting/$(DEPDIR)/layouts.Plo 2407 -rm -f plotting/$(DEPDIR)/naview.Plo 2408 -rm -f plotting/$(DEPDIR)/plot_utils.Plo 2409 -rm -f plotting/$(DEPDIR)/probabilities.Plo 2410 -rm -f plotting/$(DEPDIR)/structures.Plo 2411 -rm -f plotting/RNApuzzler/$(DEPDIR)/RNApuzzler.Plo 2412 -rm -f plotting/RNApuzzler/$(DEPDIR)/RNAturtle.Plo 2413 -rm -f search/$(DEPDIR)/BoyerMoore.Plo 2414 -rm -f utils/$(DEPDIR)/cpu.Plo 2415 -rm -f utils/$(DEPDIR)/higher_order_functions.Plo 2416 -rm -f utils/$(DEPDIR)/libRNA_utils_avx512_la-higher_order_functions_avx512.Plo 2417 -rm -f utils/$(DEPDIR)/libRNA_utils_sse41_la-higher_order_functions_sse41.Plo 2418 -rm -f utils/$(DEPDIR)/msa_utils.Plo 2419 -rm -f utils/$(DEPDIR)/string_utils.Plo 2420 -rm -f utils/$(DEPDIR)/structure_tree.Plo 2421 -rm -f utils/$(DEPDIR)/structure_utils.Plo 2422 -rm -f utils/$(DEPDIR)/svm_utils.Plo 2423 -rm -f utils/$(DEPDIR)/units.Plo 2424 -rm -f utils/$(DEPDIR)/utils.Plo 2425 -rm -f Makefile 2426maintainer-clean-am: distclean-am maintainer-clean-generic 2427 2428mostlyclean: mostlyclean-recursive 2429 2430mostlyclean-am: mostlyclean-compile mostlyclean-generic \ 2431 mostlyclean-libtool 2432 2433pdf: pdf-recursive 2434 2435pdf-am: 2436 2437ps: ps-recursive 2438 2439ps-am: 2440 2441uninstall-am: uninstall-libLTLIBRARIES \ 2442 uninstall-nodist_pkgincludeHEADERS uninstall-pkgincludeHEADERS \ 2443 uninstall-vrna_constraintsHEADERS \ 2444 uninstall-vrna_datastructuresHEADERS uninstall-vrna_ioHEADERS \ 2445 uninstall-vrna_landscapeHEADERS uninstall-vrna_loopsHEADERS \ 2446 uninstall-vrna_paramsHEADERS uninstall-vrna_plottingHEADERS \ 2447 uninstall-vrna_puzzlerHEADERS uninstall-vrna_searchHEADERS \ 2448 uninstall-vrna_utilsHEADERS 2449 2450.MAKE: $(am__recursive_targets) install-am install-strip 2451 2452.PHONY: $(am__recursive_targets) CTAGS GTAGS TAGS all all-am all-local \ 2453 am--depfiles check check-am clean clean-generic \ 2454 clean-libLTLIBRARIES clean-libtool clean-local \ 2455 clean-noinstLTLIBRARIES cscopelist-am ctags ctags-am distclean \ 2456 distclean-compile distclean-generic distclean-libtool \ 2457 distclean-tags distdir dvi dvi-am html html-am info info-am \ 2458 install install-am install-data install-data-am install-dvi \ 2459 install-dvi-am install-exec install-exec-am install-html \ 2460 install-html-am install-info install-info-am \ 2461 install-libLTLIBRARIES install-man \ 2462 install-nodist_pkgincludeHEADERS install-pdf install-pdf-am \ 2463 install-pkgincludeHEADERS install-ps install-ps-am \ 2464 install-strip install-vrna_constraintsHEADERS \ 2465 install-vrna_datastructuresHEADERS install-vrna_ioHEADERS \ 2466 install-vrna_landscapeHEADERS install-vrna_loopsHEADERS \ 2467 install-vrna_paramsHEADERS install-vrna_plottingHEADERS \ 2468 install-vrna_puzzlerHEADERS install-vrna_searchHEADERS \ 2469 install-vrna_utilsHEADERS installcheck installcheck-am \ 2470 installdirs installdirs-am maintainer-clean \ 2471 maintainer-clean-generic mostlyclean mostlyclean-compile \ 2472 mostlyclean-generic mostlyclean-libtool pdf pdf-am ps ps-am \ 2473 tags tags-am uninstall uninstall-am uninstall-libLTLIBRARIES \ 2474 uninstall-nodist_pkgincludeHEADERS uninstall-pkgincludeHEADERS \ 2475 uninstall-vrna_constraintsHEADERS \ 2476 uninstall-vrna_datastructuresHEADERS uninstall-vrna_ioHEADERS \ 2477 uninstall-vrna_landscapeHEADERS uninstall-vrna_loopsHEADERS \ 2478 uninstall-vrna_paramsHEADERS uninstall-vrna_plottingHEADERS \ 2479 uninstall-vrna_puzzlerHEADERS uninstall-vrna_searchHEADERS \ 2480 uninstall-vrna_utilsHEADERS 2481 2482.PRECIOUS: Makefile 2483 2484 2485# static library for subpackages 2486all-local: libRNA.a 2487 2488libRNA.a: libRNA.la 2489 $(AM_V_GEN)( \ 2490 $(LIBTOOL) --config > libtoolconfig.tmp && \ 2491 ( \. ./libtoolconfig.tmp; cp "$$objdir/libRNA.a" ./ ) && \ 2492 rm -f libtoolconfig.tmp \ 2493 ) 2494 2495clean-local: 2496 -rm -f libRNA.a 2497 2498# Tell versions [3.59,3.63) of GNU make to not export all variables. 2499# Otherwise a system limit (for SysV at least) may be exceeded. 2500.NOEXPORT: 2501