| /dports/biology/infernal/infernal-1.1.3/easel/miniapps/ |
| H A D | cmd_alistat.c | 33 char *msafile = esl_opt_GetArg(go, 1); in esl_cmd_alistat() local
56 alistat_oneline(const char *msafile, ESL_MSAFILE *afp) in alistat_oneline()
147 alistat_default(const char *msafile, ESL_MSAFILE *afp) in alistat_default()
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| H A D | esl-alirev.c | 28 char *msafile = esl_opt_GetArg(go, 1); in main() local
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| H A D | esl-alipid.c | 33 char *msafile = esl_opt_GetArg(go, 1); in main() local
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| H A D | esl-weight.c | 66 char *msafile = NULL; in main() local
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| H A D | cmd_filter.c | 50 char *msafile = esl_opt_GetArg(go, 2); in esl_cmd_filter() local
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| H A D | esl-shuffle.c | 114 char *msafile = esl_opt_GetArg(go, 1); in msa_shuffling() local
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| /dports/biology/hmmer/hmmer-3.3/easel/miniapps/ |
| H A D | cmd_alistat.c | 33 char *msafile = esl_opt_GetArg(go, 1); in esl_cmd_alistat() local
56 alistat_oneline(const char *msafile, ESL_MSAFILE *afp) in alistat_oneline()
147 alistat_default(const char *msafile, ESL_MSAFILE *afp) in alistat_default()
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| H A D | esl-alirev.c | 28 char *msafile = esl_opt_GetArg(go, 1); in main() local
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| H A D | esl-alipid.c | 33 char *msafile = esl_opt_GetArg(go, 1); in main() local
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| H A D | esl-weight.c | 66 char *msafile = NULL; in main() local
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| H A D | cmd_filter.c | 50 char *msafile = esl_opt_GetArg(go, 2); in esl_cmd_filter() local
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| H A D | esl-shuffle.c | 114 char *msafile = esl_opt_GetArg(go, 1); in msa_shuffling() local
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| /dports/biology/infernal/infernal-1.1.3/hmmer/src/ |
| H A D | build.c | 413 char msafile[16] = "p7tmpXXXXXX"; /* tmpfile name template */ in utest_basic() local
455 char msafile[16] = "p7tmpXXXXXX"; /* tmpfile name template */ in utest_fragments() local
582 char *msafile = esl_opt_GetArg(go, 1); in main() local
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| H A D | hmmalign.c | 228 map_alignment(const char *msafile, const P7_HMM *hmm, ESL_SQ ***ret_sq, P7_TRACE ***ret_tr, int *re… in map_alignment()
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| /dports/biology/hmmer/hmmer-3.3/src/ |
| H A D | build.c | 413 char msafile[16] = "p7tmpXXXXXX"; /* tmpfile name template */ in utest_basic() local
455 char msafile[16] = "p7tmpXXXXXX"; /* tmpfile name template */ in utest_fragments() local
582 char *msafile = esl_opt_GetArg(go, 1); in main() local
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| H A D | hmmalign.c | 228 map_alignment(const char *msafile, const P7_HMM *hmm, ESL_SQ ***ret_sq, P7_TRACE ***ret_tr, int *re… in map_alignment()
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| /dports/biology/infernal/infernal-1.1.3/easel/ |
| H A D | esl_msafile.c | 187 esl_msafile_Open(ESL_ALPHABET **byp_abc, const char *msafile, const char *env, int format, ESL_MSAF… in esl_msafile_Open()
1465 char *msafile = esl_opt_GetArg(go, 1); in main() local
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| H A D | esl_msaweight.c | 1257 char *msafile; in main() local
1363 char *msafile; in main() local
1768 char *msafile = NULL; in main() local
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| H A D | esl_msashuffle.c | 527 char *msafile = esl_opt_GetArg(go, 1); in main() local
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| /dports/biology/hmmer/hmmer-3.3/easel/ |
| H A D | esl_msafile.c | 187 esl_msafile_Open(ESL_ALPHABET **byp_abc, const char *msafile, const char *env, int format, ESL_MSAF… in esl_msafile_Open()
1465 char *msafile = esl_opt_GetArg(go, 1); in main() local
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| H A D | esl_msaweight.c | 1257 char *msafile; in main() local
1363 char *msafile; in main() local
1768 char *msafile = NULL; in main() local
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| H A D | esl_msashuffle.c | 527 char *msafile = esl_opt_GetArg(go, 1); in main() local
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| /dports/biology/infernal/infernal-1.1.3/src/ |
| H A D | cmalign.c | 1654 map_alignment(const char *msafile, CM_t *cm, int noss_used, char *errbuf, CM_ALNDATA ***ret_dataA, … in map_alignment()
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