|
Name |
|
Date |
Size |
#Lines |
LOC |
| .. | | 03-May-2022 | - |
| demotic/ | H | 03-May-2022 | - | 71,129 | 61,162 |
| devkit/ | H | 03-May-2022 | - | 2,442 | 1,245 |
| documentation/ | H | 19-Nov-2019 | - | 5,229 | 4,045 |
| esl_msa_testfiles/ | H | 19-Nov-2019 | - | 730 | 594 |
| formats/ | H | 19-Nov-2019 | - | 601 | 562 |
| m4/ | H | 19-Nov-2019 | - | 1,839 | 1,691 |
| miniapps/ | H | 03-May-2022 | - | 30,950 | 23,060 |
| release-notes/ | H | 19-Nov-2019 | - | 127 | 81 |
| testsuite/ | H | 07-May-2022 | - | 1,019 | 700 |
| .gitignore | H A D | 19-Nov-2019 | 750 | 45 | 44 |
| .travis.yml | H A D | 19-Nov-2019 | 117 | 13 | 9 |
| LICENSE | H A D | 19-Nov-2019 | 3.5 KiB | 76 | 63 |
| Makefile.in | H A D | 19-Nov-2019 | 17.4 KiB | 676 | 534 |
| README.md | H A D | 19-Nov-2019 | 1.7 KiB | 59 | 37 |
| config.guess | H A D | 19-Nov-2019 | 43.1 KiB | 1,477 | 1,284 |
| config.sub | H A D | 19-Nov-2019 | 35.3 KiB | 1,802 | 1,661 |
| configure.ac | H A D | 19-Nov-2019 | 21.2 KiB | 639 | 537 |
| decoy_config.h.in | H A D | 19-Nov-2019 | 494 | 12 | 11 |
| easel.c | H A D | 19-Nov-2019 | 94 KiB | 2,636 | 1,026 |
| easel.h | H A D | 19-Nov-2019 | 20.9 KiB | 525 | 247 |
| easel.tex | H A D | 19-Nov-2019 | 18.2 KiB | 414 | 337 |
| esl_alloc.c | H A D | 19-Nov-2019 | 14.4 KiB | 412 | 264 |
| esl_alloc.h | H A D | 19-Nov-2019 | 204 | 10 | 6 |
| esl_alloc.md | H A D | 19-Nov-2019 | 6.4 KiB | 163 | 120 |
| esl_alphabet.c | H A D | 19-Nov-2019 | 85.5 KiB | 2,576 | 1,350 |
| esl_alphabet.h | H A D | 19-Nov-2019 | 7.3 KiB | 133 | 97 |
| esl_alphabet.tex | H A D | 19-Nov-2019 | 23.7 KiB | 502 | 416 |
| esl_arr2.c | H A D | 19-Nov-2019 | 1.1 KiB | 58 | 30 |
| esl_arr2.h | H A D | 19-Nov-2019 | 204 | 10 | 6 |
| esl_arr3.c | H A D | 19-Nov-2019 | 1.4 KiB | 70 | 42 |
| esl_arr3.h | H A D | 19-Nov-2019 | 226 | 10 | 6 |
| esl_avx.c | H A D | 19-Nov-2019 | 7.2 KiB | 252 | 179 |
| esl_avx.h | H A D | 19-Nov-2019 | 6.4 KiB | 177 | 76 |
| esl_avx512.c | H A D | 19-Nov-2019 | 4.7 KiB | 172 | 117 |
| esl_avx512.h | H A D | 19-Nov-2019 | 6.7 KiB | 165 | 79 |
| esl_bitfield.c | H A D | 19-Nov-2019 | 4.6 KiB | 163 | 96 |
| esl_bitfield.h | H A D | 19-Nov-2019 | 867 | 45 | 32 |
| esl_buffer.c | H A D | 19-Nov-2019 | 114.7 KiB | 3,278 | 1,803 |
| esl_buffer.h | H A D | 19-Nov-2019 | 5.5 KiB | 110 | 51 |
| esl_buffer.tex | H A D | 19-Nov-2019 | 18.6 KiB | 457 | 327 |
| esl_cluster.c | H A D | 19-Nov-2019 | 12.2 KiB | 340 | 147 |
| esl_cluster.h | H A D | 19-Nov-2019 | 422 | 13 | 7 |
| esl_cluster.tex | H A D | 19-Nov-2019 | 2.1 KiB | 54 | 43 |
| esl_composition.c | H A D | 19-Nov-2019 | 4.4 KiB | 151 | 103 |
| esl_composition.h | H A D | 19-Nov-2019 | 205 | 7 | 5 |
| esl_config.h.in | H A D | 19-Nov-2019 | 2.7 KiB | 104 | 83 |
| esl_cpu.c | H A D | 19-Nov-2019 | 13 KiB | 472 | 248 |
| esl_cpu.h | H A D | 19-Nov-2019 | 257 | 12 | 8 |
| esl_dirichlet.c | H A D | 19-Nov-2019 | 10.8 KiB | 373 | 207 |
| esl_dirichlet.h | H A D | 19-Nov-2019 | 934 | 24 | 13 |
| esl_dirichlet.tex | H A D | 19-Nov-2019 | 2.3 KiB | 58 | 39 |
| esl_distance.c | H A D | 19-Nov-2019 | 53 KiB | 1,579 | 809 |
| esl_distance.h | H A D | 19-Nov-2019 | 2.4 KiB | 57 | 31 |
| esl_distance.tex | H A D | 19-Nov-2019 | 6.3 KiB | 145 | 115 |
| esl_dmatrix.c | H A D | 19-Nov-2019 | 49.2 KiB | 1,588 | 806 |
| esl_dmatrix.h | H A D | 19-Nov-2019 | 3.8 KiB | 85 | 57 |
| esl_dmatrix.tex | H A D | 19-Nov-2019 | 9.5 KiB | 188 | 154 |
| esl_dsqdata.c | H A D | 19-Nov-2019 | 80.8 KiB | 1,810 | 967 |
| esl_dsqdata.h | H A D | 19-Nov-2019 | 7 KiB | 155 | 91 |
| esl_dsqdata.md | H A D | 19-Nov-2019 | 14.7 KiB | 313 | 242 |
| esl_dsqdata.tex | H A D | 19-Nov-2019 | 14.1 KiB | 333 | 267 |
| esl_exponential.c | H A D | 19-Nov-2019 | 20.7 KiB | 679 | 335 |
| esl_exponential.h | H A D | 19-Nov-2019 | 1.5 KiB | 40 | 25 |
| esl_exponential.tex | H A D | 19-Nov-2019 | 1.1 KiB | 42 | 27 |
| esl_fileparser.c | H A D | 19-Nov-2019 | 24.6 KiB | 795 | 358 |
| esl_fileparser.h | H A D | 19-Nov-2019 | 2 KiB | 41 | 31 |
| esl_fileparser.tex | H A D | 19-Nov-2019 | 4 KiB | 98 | 74 |
| esl_gamma.c | H A D | 19-Nov-2019 | 25.3 KiB | 819 | 458 |
| esl_gamma.h | H A D | 19-Nov-2019 | 1.4 KiB | 37 | 23 |
| esl_gamma.tex | H A D | 19-Nov-2019 | 1.7 KiB | 54 | 37 |
| esl_gencode.c | H A D | 19-Nov-2019 | 61.8 KiB | 1,182 | 631 |
| esl_gencode.h | H A D | 19-Nov-2019 | 4.5 KiB | 87 | 53 |
| esl_getopts.c | H A D | 19-Nov-2019 | 78.7 KiB | 2,164 | 1,067 |
| esl_getopts.h | H A D | 19-Nov-2019 | 5.4 KiB | 119 | 72 |
| esl_getopts.md | H A D | 19-Nov-2019 | 32.2 KiB | 734 | 588 |
| esl_gev.c | H A D | 19-Nov-2019 | 29.4 KiB | 969 | 538 |
| esl_gev.h | H A D | 19-Nov-2019 | 1.6 KiB | 44 | 26 |
| esl_gev.tex | H A D | 19-Nov-2019 | 7.8 KiB | 198 | 160 |
| esl_graph.c | H A D | 19-Nov-2019 | 8.3 KiB | 232 | 132 |
| esl_graph.h | H A D | 19-Nov-2019 | 200 | 8 | 5 |
| esl_gumbel.c | H A D | 19-Nov-2019 | 44.1 KiB | 1,406 | 708 |
| esl_gumbel.h | H A D | 19-Nov-2019 | 1.8 KiB | 45 | 26 |
| esl_gumbel.tex | H A D | 19-Nov-2019 | 23.6 KiB | 616 | 505 |
| esl_heap.c | H A D | 19-Nov-2019 | 9.3 KiB | 336 | 177 |
| esl_heap.h | H A D | 19-Nov-2019 | 1,015 | 38 | 24 |
| esl_histogram.c | H A D | 19-Nov-2019 | 68.9 KiB | 2,075 | 1,117 |
| esl_histogram.h | H A D | 19-Nov-2019 | 5.3 KiB | 127 | 66 |
| esl_histogram.tex | H A D | 19-Nov-2019 | 13.9 KiB | 300 | 235 |
| esl_hmm.c | H A D | 19-Nov-2019 | 20.7 KiB | 806 | 585 |
| esl_hmm.h | H A D | 19-Nov-2019 | 2.3 KiB | 55 | 37 |
| esl_huffman.c | H A D | 19-Nov-2019 | 33.3 KiB | 1,094 | 591 |
| esl_huffman.h | H A D | 19-Nov-2019 | 1.9 KiB | 53 | 22 |
| esl_hyperexp.c | H A D | 19-Nov-2019 | 39 KiB | 1,357 | 781 |
| esl_hyperexp.h | H A D | 19-Nov-2019 | 2.4 KiB | 63 | 44 |
| esl_hyperexp.tex | H A D | 19-Nov-2019 | 1.1 KiB | 38 | 24 |
| esl_json.c | H A D | 19-Nov-2019 | 59.5 KiB | 1,375 | 855 |
| esl_json.h | H A D | 19-Nov-2019 | 5.4 KiB | 150 | 95 |
| esl_keyhash.c | H A D | 19-Nov-2019 | 27.6 KiB | 942 | 556 |
| esl_keyhash.h | H A D | 19-Nov-2019 | 2.7 KiB | 64 | 27 |
| esl_keyhash.tex | H A D | 19-Nov-2019 | 3.5 KiB | 90 | 76 |
| esl_matrixops.c | H A D | 19-Nov-2019 | 13.1 KiB | 609 | 420 |
| esl_matrixops.h | H A D | 19-Nov-2019 | 2.8 KiB | 68 | 43 |
| esl_mem.c | H A D | 19-Nov-2019 | 54.9 KiB | 1,326 | 761 |
| esl_mem.h | H A D | 19-Nov-2019 | 1.7 KiB | 30 | 23 |
| esl_mem.md | H A D | 19-Nov-2019 | 3 KiB | 64 | 51 |
| esl_minimizer.c | H A D | 19-Nov-2019 | 33.1 KiB | 961 | 514 |
| esl_minimizer.h | H A D | 19-Nov-2019 | 2.7 KiB | 74 | 46 |
| esl_minimizer.tex | H A D | 19-Nov-2019 | 241 | 14 | 6 |
| esl_mixdchlet.c | H A D | 19-Nov-2019 | 32 KiB | 936 | 509 |
| esl_mixdchlet.h | H A D | 19-Nov-2019 | 1.8 KiB | 48 | 25 |
| esl_mixdchlet.tex | H A D | 19-Nov-2019 | 3.4 KiB | 97 | 71 |
| esl_mixgev.c | H A D | 19-Nov-2019 | 22.4 KiB | 806 | 412 |
| esl_mixgev.h | H A D | 19-Nov-2019 | 2 KiB | 54 | 37 |
| esl_mpi.c | H A D | 19-Nov-2019 | 57.1 KiB | 1,232 | 600 |
| esl_mpi.h | H A D | 19-Nov-2019 | 2.7 KiB | 67 | 45 |
| esl_mpi.tex | H A D | 19-Nov-2019 | 770 | 25 | 18 |
| esl_msa.c | H A D | 19-Nov-2019 | 137.1 KiB | 3,971 | 2,094 |
| esl_msa.h | H A D | 19-Nov-2019 | 10.5 KiB | 208 | 132 |
| esl_msa.tex | H A D | 19-Nov-2019 | 12.6 KiB | 269 | 207 |
| esl_msacluster.c | H A D | 19-Nov-2019 | 13.4 KiB | 402 | 227 |
| esl_msacluster.h | H A D | 19-Nov-2019 | 318 | 12 | 7 |
| esl_msacluster.tex | H A D | 19-Nov-2019 | 954 | 29 | 23 |
| esl_msafile.c | H A D | 19-Nov-2019 | 65.9 KiB | 1,528 | 730 |
| esl_msafile.h | H A D | 19-Nov-2019 | 6.8 KiB | 137 | 63 |
| esl_msafile.md | H A D | 19-Nov-2019 | 7.2 KiB | 182 | 127 |
| esl_msafile2.c | H A D | 19-Nov-2019 | 66.5 KiB | 1,460 | 897 |
| esl_msafile2.h | H A D | 19-Nov-2019 | 3.3 KiB | 69 | 35 |
| esl_msafile_a2m.c | H A D | 19-Nov-2019 | 44.9 KiB | 1,110 | 732 |
| esl_msafile_a2m.h | H A D | 19-Nov-2019 | 539 | 17 | 10 |
| esl_msafile_afa.c | H A D | 19-Nov-2019 | 29.9 KiB | 718 | 460 |
| esl_msafile_afa.h | H A D | 19-Nov-2019 | 533 | 17 | 10 |
| esl_msafile_clustal.c | H A D | 19-Nov-2019 | 45.4 KiB | 1,059 | 679 |
| esl_msafile_clustal.h | H A D | 19-Nov-2019 | 573 | 17 | 10 |
| esl_msafile_phylip.c | H A D | 19-Nov-2019 | 76.3 KiB | 1,896 | 1,231 |
| esl_msafile_phylip.h | H A D | 19-Nov-2019 | 686 | 19 | 11 |
| esl_msafile_psiblast.c | H A D | 19-Nov-2019 | 34.2 KiB | 810 | 542 |
| esl_msafile_psiblast.h | H A D | 19-Nov-2019 | 559 | 17 | 10 |
| esl_msafile_selex.c | H A D | 19-Nov-2019 | 50.9 KiB | 1,239 | 855 |
| esl_msafile_selex.h | H A D | 19-Nov-2019 | 542 | 17 | 10 |
| esl_msafile_stockholm.c | H A D | 19-Nov-2019 | 112.4 KiB | 2,716 | 2,054 |
| esl_msafile_stockholm.h | H A D | 19-Nov-2019 | 573 | 18 | 10 |
| esl_msashuffle.c | H A D | 19-Nov-2019 | 22.4 KiB | 576 | 309 |
| esl_msashuffle.h | H A D | 19-Nov-2019 | 1.1 KiB | 27 | 12 |
| esl_msaweight.c | H A D | 19-Nov-2019 | 73.1 KiB | 1,864 | 1,038 |
| esl_msaweight.h | H A D | 19-Nov-2019 | 3.5 KiB | 82 | 51 |
| esl_msaweight.md | H A D | 19-Nov-2019 | 5.2 KiB | 137 | 103 |
| esl_msaweight.tex | H A D | 19-Nov-2019 | 1.8 KiB | 54 | 39 |
| esl_neon.c | H A D | 19-Nov-2019 | 26.5 KiB | 734 | 437 |
| esl_neon.h | H A D | 19-Nov-2019 | 10.1 KiB | 353 | 181 |
| esl_normal.c | H A D | 19-Nov-2019 | 9.8 KiB | 341 | 183 |
| esl_normal.h | H A D | 19-Nov-2019 | 672 | 19 | 11 |
| esl_normal.tex | H A D | 19-Nov-2019 | 694 | 25 | 16 |
| esl_paml.c | H A D | 19-Nov-2019 | 5.6 KiB | 175 | 80 |
| esl_paml.h | H A D | 19-Nov-2019 | 504 | 23 | 7 |
| esl_paml.tex | H A D | 19-Nov-2019 | 132 | 5 | 2 |
| esl_quicksort.c | H A D | 19-Nov-2019 | 7.3 KiB | 236 | 120 |
| esl_quicksort.h | H A D | 19-Nov-2019 | 270 | 12 | 5 |
| esl_rand64.c | H A D | 19-Nov-2019 | 27 KiB | 830 | 447 |
| esl_rand64.h | H A D | 19-Nov-2019 | 1.1 KiB | 33 | 22 |
| esl_random.c | H A D | 19-Nov-2019 | 48.1 KiB | 1,442 | 746 |
| esl_random.h | H A D | 19-Nov-2019 | 3 KiB | 73 | 37 |
| esl_random.tex | H A D | 19-Nov-2019 | 6.4 KiB | 128 | 109 |
| esl_randomseq.c | H A D | 19-Nov-2019 | 75.5 KiB | 2,115 | 1,159 |
| esl_randomseq.h | H A D | 19-Nov-2019 | 3.3 KiB | 61 | 38 |
| esl_randomseq.tex | H A D | 19-Nov-2019 | 3.9 KiB | 80 | 64 |
| esl_ratematrix.c | H A D | 19-Nov-2019 | 26.5 KiB | 804 | 389 |
| esl_ratematrix.h | H A D | 19-Nov-2019 | 1.1 KiB | 29 | 15 |
| esl_ratematrix.tex | H A D | 19-Nov-2019 | 110 | 4 | 2 |
| esl_recorder.c | H A D | 19-Nov-2019 | 35.3 KiB | 1,134 | 621 |
| esl_recorder.h | H A D | 19-Nov-2019 | 3.1 KiB | 82 | 31 |
| esl_red_black.c | H A D | 19-Nov-2019 | 25.5 KiB | 757 | 545 |
| esl_red_black.h | H A D | 19-Nov-2019 | 3.3 KiB | 62 | 21 |
| esl_regexp.c | H A D | 19-Nov-2019 | 52.7 KiB | 1,904 | 1,117 |
| esl_regexp.h | H A D | 19-Nov-2019 | 2.8 KiB | 71 | 27 |
| esl_regexp.tex | H A D | 19-Nov-2019 | 14.4 KiB | 387 | 313 |
| esl_rootfinder.c | H A D | 19-Nov-2019 | 15.6 KiB | 532 | 274 |
| esl_rootfinder.h | H A D | 19-Nov-2019 | 1.4 KiB | 48 | 33 |
| esl_rootfinder.tex | H A D | 19-Nov-2019 | 1.9 KiB | 44 | 31 |
| esl_scorematrix.c | H A D | 19-Nov-2019 | 115.5 KiB | 2,333 | 1,365 |
| esl_scorematrix.h | H A D | 19-Nov-2019 | 3.6 KiB | 77 | 42 |
| esl_scorematrix.tex | H A D | 19-Nov-2019 | 3 KiB | 52 | 45 |
| esl_sq.c | H A D | 19-Nov-2019 | 88.3 KiB | 2,795 | 1,597 |
| esl_sq.h | H A D | 19-Nov-2019 | 10.6 KiB | 193 | 90 |
| esl_sq.tex | H A D | 19-Nov-2019 | 14.6 KiB | 305 | 246 |
| esl_sqio.c | H A D | 19-Nov-2019 | 82.9 KiB | 2,449 | 1,281 |
| esl_sqio.h | H A D | 19-Nov-2019 | 7.2 KiB | 163 | 95 |
| esl_sqio.tex | H A D | 19-Nov-2019 | 11.8 KiB | 276 | 218 |
| esl_sqio_ascii.c | H A D | 19-Nov-2019 | 124.5 KiB | 3,379 | 1,788 |
| esl_sqio_ascii.h | H A D | 19-Nov-2019 | 3.8 KiB | 85 | 55 |
| esl_sqio_ncbi.c | H A D | 19-Nov-2019 | 98.8 KiB | 3,293 | 1,784 |
| esl_sqio_ncbi.h | H A D | 19-Nov-2019 | 4.7 KiB | 105 | 66 |
| esl_sse.c | H A D | 19-Nov-2019 | 26.3 KiB | 691 | 382 |
| esl_sse.h | H A D | 19-Nov-2019 | 10.2 KiB | 322 | 118 |
| esl_sse.tex | H A D | 19-Nov-2019 | 1.5 KiB | 42 | 33 |
| esl_ssi.c | H A D | 19-Nov-2019 | 80.4 KiB | 2,140 | 1,225 |
| esl_ssi.h | H A D | 19-Nov-2019 | 6.5 KiB | 157 | 116 |
| esl_ssi.tex | H A D | 19-Nov-2019 | 21.5 KiB | 452 | 374 |
| esl_stack.c | H A D | 19-Nov-2019 | 33.7 KiB | 1,156 | 663 |
| esl_stack.h | H A D | 19-Nov-2019 | 2.2 KiB | 65 | 43 |
| esl_stack.tex | H A D | 19-Nov-2019 | 4.1 KiB | 90 | 74 |
| esl_stats.c | H A D | 19-Nov-2019 | 39.7 KiB | 1,161 | 660 |
| esl_stats.h | H A D | 19-Nov-2019 | 4.2 KiB | 139 | 80 |
| esl_stats.tex | H A D | 19-Nov-2019 | 1.7 KiB | 44 | 34 |
| esl_stopwatch.c | H A D | 19-Nov-2019 | 12.7 KiB | 416 | 215 |
| esl_stopwatch.h | H A D | 19-Nov-2019 | 1.7 KiB | 58 | 35 |
| esl_stopwatch.tex | H A D | 19-Nov-2019 | 4.5 KiB | 118 | 90 |
| esl_stretchexp.c | H A D | 19-Nov-2019 | 21 KiB | 662 | 387 |
| esl_stretchexp.h | H A D | 19-Nov-2019 | 1.6 KiB | 40 | 25 |
| esl_stretchexp.tex | H A D | 19-Nov-2019 | 1.5 KiB | 42 | 31 |
| esl_subcmd.c | H A D | 19-Nov-2019 | 2.1 KiB | 54 | 40 |
| esl_subcmd.h | H A D | 19-Nov-2019 | 632 | 24 | 13 |
| esl_swat.c | H A D | 19-Nov-2019 | 5.8 KiB | 220 | 122 |
| esl_swat.tex | H A D | 19-Nov-2019 | 77 | 2 | 1 |
| esl_threads.c | H A D | 19-Nov-2019 | 12.8 KiB | 444 | 202 |
| esl_threads.h | H A D | 19-Nov-2019 | 1.6 KiB | 38 | 25 |
| esl_tree.c | H A D | 19-Nov-2019 | 72.1 KiB | 2,189 | 1,220 |
| esl_tree.h | H A D | 19-Nov-2019 | 4.8 KiB | 120 | 50 |
| esl_tree.tex | H A D | 19-Nov-2019 | 1.3 KiB | 32 | 26 |
| esl_varint.c | H A D | 19-Nov-2019 | 32.5 KiB | 908 | 481 |
| esl_varint.h | H A D | 19-Nov-2019 | 805 | 23 | 13 |
| esl_varint.md | H A D | 19-Nov-2019 | 11.6 KiB | 334 | 251 |
| esl_vectorops.c | H A D | 19-Nov-2019 | 48 KiB | 1,901 | 1,315 |
| esl_vectorops.h | H A D | 19-Nov-2019 | 7.5 KiB | 154 | 118 |
| esl_vectorops.md | H A D | 19-Nov-2019 | 5 KiB | 81 | 63 |
| esl_vmx.c | H A D | 19-Nov-2019 | 20.9 KiB | 560 | 305 |
| esl_vmx.h | H A D | 19-Nov-2019 | 5.8 KiB | 238 | 108 |
| esl_weibull.c | H A D | 19-Nov-2019 | 23.9 KiB | 707 | 379 |
| esl_weibull.h | H A D | 19-Nov-2019 | 1.5 KiB | 40 | 25 |
| esl_weibull.tex | H A D | 19-Nov-2019 | 1.4 KiB | 48 | 30 |
| esl_workqueue.c | H A D | 19-Nov-2019 | 16.3 KiB | 558 | 290 |
| esl_workqueue.h | H A D | 19-Nov-2019 | 1.9 KiB | 40 | 26 |
| esl_wuss.c | H A D | 19-Nov-2019 | 28.5 KiB | 868 | 511 |
| esl_wuss.h | H A D | 19-Nov-2019 | 561 | 18 | 12 |
| esl_wuss.tex | H A D | 19-Nov-2019 | 1.1 KiB | 35 | 20 |
| install-sh | H A D | 19-Nov-2019 | 8.1 KiB | 296 | 170 |
| interface_gsl.c | H A D | 19-Nov-2019 | 1.5 KiB | 56 | 37 |
| interface_gsl.h | H A D | 19-Nov-2019 | 538 | 25 | 14 |
| interface_lapack.c | H A D | 19-Nov-2019 | 2.5 KiB | 87 | 54 |
| interface_lapack.h | H A D | 19-Nov-2019 | 784 | 25 | 11 |
| makeTAGS.sh | H A D | 19-Nov-2019 | 609 | 13 | 9 |
README.md
1# Easel - a C library for biological sequence analysis
2
3[![](https://travis-ci.org/EddyRivasLab/easel.svg?branch=develop)](https://travis-ci.org/EddyRivasLab/easel)
4![](http://img.shields.io/badge/license-BSD-brightgreen.svg)
5
6[Easel](http://bioeasel.org) is an ANSI C code library developed by
7the [Eddy/Rivas laboratory](http://eddylab.org) at Harvard. Easel
8supports our work on computational analysis of biological sequences
9using probabilistic models. Easel is used by
10[HMMER](http://hmmer.org), the profile hidden Markov model software
11that underlies several protein and DNA sequence family databases such
12as [Pfam](http://pfam.xfam.org), and by
13[Infernal](http://eddylab.org/infernal), the profile stochastic
14context-free grammar software that underlies the
15[Rfam](http://rfam.xfam.org) RNA family database. Easel aims to make
16similar applications more robust and easier to develop, by providing a
17set of reusable, documented, and well-tested functions.
18
19Easel is not (yet) released on its own. It is part of the HMMER and
20Infernal releases.
21
22To participate in Easel development, visit us at
23[github](https://github.com/EddyRivasLab/easel).
24
25
26### to build Easel source code from github:
27
28```bash
29 % git clone https://github.com/EddyRivasLab/easel
30 % cd easel
31 % autoconf
32 % ./configure
33 % make
34 % make check
35```
36
37This procedure gives you our `master` branch - the most recent Easel
38release that was packaged with a release of HMMER, Infernal, or other
39lab software. If you want a feature that we've put in more recently,
40you want our `develop` branch. After the `git clone` and `cd easel`,
41do:
42
43```bash
44 % git checkout develop
45```
46
47and proceed to `autoconf`.
48
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