1 /* i/o of multiple sequence alignment files in aligned FASTA format 2 */ 3 #ifndef eslMSAFILE_AFA_INCLUDED 4 #define eslMSAFILE_AFA_INCLUDED 5 #include "esl_config.h" 6 7 #include "esl_msa.h" 8 #include "esl_msafile.h" 9 10 extern int esl_msafile_afa_SetInmap (ESL_MSAFILE *afp); 11 extern int esl_msafile_afa_GuessAlphabet(ESL_MSAFILE *afp, int *ret_type); 12 extern int esl_msafile_afa_Read (ESL_MSAFILE *afp, ESL_MSA **ret_msa); 13 extern int esl_msafile_afa_Write (FILE *fp, const ESL_MSA *msa); 14 15 #endif /* eslMSAFILE_AFA_INCLUDED */ 16 17