1 /* i/o of multiple sequence alignment files in aligned FASTA format
2  */
3 #ifndef eslMSAFILE_AFA_INCLUDED
4 #define eslMSAFILE_AFA_INCLUDED
5 #include "esl_config.h"
6 
7 #include "esl_msa.h"
8 #include "esl_msafile.h"
9 
10 extern int esl_msafile_afa_SetInmap     (ESL_MSAFILE *afp);
11 extern int esl_msafile_afa_GuessAlphabet(ESL_MSAFILE *afp, int *ret_type);
12 extern int esl_msafile_afa_Read         (ESL_MSAFILE *afp, ESL_MSA **ret_msa);
13 extern int esl_msafile_afa_Write        (FILE *fp, const ESL_MSA *msa);
14 
15 #endif /* eslMSAFILE_AFA_INCLUDED */
16 
17