1The \eslmod{msacluster} module implements single linkage clustering by 2sequence identity for the sequences in a multiple sequence 3alignment. The API is summarized in Table~\ref{tbl:msacluster_api}. 4 5Clustering is done using the generalized single linkage clustering 6algorithm in the \eslmod{cluster} module. 7 8% Table generated by autodoc -t esl_msacluster.c (so don't edit here, edit esl_msacluster.c:) 9\begin{table}[hbp] 10\begin{center} 11{\small 12\begin{tabular}{|ll|}\hline 13\hyperlink{func:esl_msacluster_SingleLinkage()}{\ccode{esl\_msacluster\_SingleLinkage()}} & Single linkage clustering by percent identity.\\ 14\hline 15\end{tabular} 16} 17\end{center} 18\caption{The \eslmod{msacluster} API.} 19\label{tbl:msacluster_api} 20\end{table} 21 22\subsection{Example of using the msacluster API} 23 24An example of reading an MSA from a file and doing 25single-linkage-clustering on the aligned sequences at $\geq$ 62\% 26sequence identity: 27 28\input{cexcerpts/msacluster_example} 29