| /dports/biology/bbmap/bbmap/current/stream/ |
| H A D | SamStreamerWrapper.java | 208 public boolean ordered=true; field in SamStreamerWrapper
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| /dports/biology/bbmap/bbmap/current/tax/ |
| H A D | FilterByTaxa.java | 439 private final boolean ordered=false; field in FilterByTaxa
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| H A D | SplitByTaxa.java | 386 private final boolean ordered=false; field in SplitByTaxa
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| /dports/biology/bbmap/bbmap/current/template/ |
| H A D | A_Sample.java | 465 private final boolean ordered=false; field in A_Sample
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| /dports/biology/bbmap/bbmap/current/var2/ |
| H A D | ApplyVariants.java | 650 private final boolean ordered=false; field in ApplyVariants
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| /dports/biology/canu/canu-2.2/src/utgcns/libboost/boost/format/ |
| H A D | format_class.hpp | 146 enum style_values { ordered = 1, // set only if all directives are positional enumerator
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| /dports/biology/canu/canu-2.2/src/utgcns/libboost/boost/multi_index/detail/ |
| H A D | index_matcher.hpp | 76 bool ordered; member
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| /dports/biology/emboss/EMBOSS-6.6.0/emboss/ |
| H A D | pscan.c | 57 AjBool ordered; in main() local
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| H A D | wordfinder.c | 353 AjPList ordered; in wordfinder_matchListOrder() local
409 static void wordfinder_orderandconcat(AjPList list,AjPList ordered) in wordfinder_orderandconcat()
500 AjPList ordered = NULL; in wordfinder_findstartpoints() local
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| /dports/biology/emboss/EMBOSS-6.6.0/nucleus/ |
| H A D | embmat.c | 310 AjBool *all, AjBool *ordered, AjBool overlap) in embMatProtScanInt()
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| H A D | embmat.h | 156 AjBool ordered; member
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| /dports/biology/exonerate/exonerate-2.4.0/src/c4/ |
| H A D | c4.c | 1421 register GPtrArray *ordered = g_ptr_array_new(); in C4_Model_topological_sort() local
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| /dports/biology/freebayes/freebayes-1.3.5/contrib/htslib/ |
| H A D | hfile_s3.c | 896 kstring_t ordered = {0, 0, NULL}; in order_query_string() local
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| /dports/biology/freebayes/freebayes-1.3.5/src/ |
| H A D | Allele.cpp | 630 map<int, string> ordered; in homogenizeAlleles() local
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| /dports/biology/gmap/gmap-2020-09-12/src/ |
| H A D | stage1.c | 2700 int *ordered; in find_segments() local
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| /dports/biology/htslib/htslib-1.14/ |
| H A D | hfile_s3.c | 944 kstring_t ordered = {0, 0, NULL}; in order_query_string() local
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| /dports/biology/jalview/jalview/src/jalview/datamodel/ |
| H A D | SequenceFeature.java | 646 TreeMap<String, Object> ordered = new TreeMap<>( in getDetailsReport() local
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| /dports/biology/lamarc/lamarc-2.1.8/boost/format/ |
| H A D | format_class.hpp | 121 enum style_values { ordered = 1, // set only if all directives are positional enumerator
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| /dports/biology/lamarc/lamarc-2.1.8/boost/multi_index/detail/ |
| H A D | index_matcher.hpp | 76 bool ordered; member
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/validator/ |
| H A D | single_feat_validator.cpp | 3231 bool ordered = true; in x_ValidateAnticodon() local
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| H A D | validatorp.cpp | 2165 bool ordered = true; in ValidateSeqLoc() local
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| /dports/biology/ncbi-entrez-direct/ncbi-entrez-direct-14.9.20210423/cmd/vendor/golang.org/x/text/collate/build/ |
| H A D | order.go | 216 ordered []*entry member
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| /dports/biology/ncbi-toolkit/ncbi/api/ |
| H A D | seqmgr.c | 5655 Boolean mixed_strand = FALSE, ordered = TRUE; in CheckForTransSplice() local
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| H A D | sqnutil3.c | 5827 extern void MergeFeatureIntervalsToParts (SeqFeatPtr sfp, Boolean ordered) in MergeFeatureIntervalsToParts()
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| H A D | utilpub.c | 1384 Boolean numbered=TRUE, ordered=TRUE; in OrganizePubList() local
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