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Name Date Size #Lines LOC

..07-May-2022-

acd/H15-Jul-2013-31,98226,426

data/H03-May-2022-4,171,6804,077,807

index/H03-May-2022-2,1642,010

COPYINGH A D19-Sep-200017.6 KiB341281

Makefile.amH A D15-Jul-201314.6 KiB712668

Makefile.inH A D03-May-2022244.3 KiB5,2035,112

aaindexextract.cH A D26-Jun-20082.7 KiB11159

abiview.cH A D16-May-201113.8 KiB549316

acdc.cH A D07-Oct-20091.4 KiB5112

acdgalaxy.cH A D04-Oct-20113.9 KiB14024

acdlog.cH A D07-Oct-20091.6 KiB5612

acdpretty.cH A D07-Oct-20091.5 KiB5313

acdrelations.cH A D15-Jul-201330.3 KiB1,111505

acdtable.cH A D07-Oct-20091.5 KiB5213

acdtrace.cH A D07-Oct-20091.7 KiB5712

acdvalid.cH A D07-Oct-20091.6 KiB5512

acdxsd.cH A D07-Oct-20091.5 KiB5213

ajtest.cH A D07-Feb-20111.7 KiB8140

aligncopy.cH A D14-Apr-20102.2 KiB8233

aligncopypair.cH A D14-Apr-20102.5 KiB9546

antigenic.cH A D26-Aug-201113 KiB585402

assemblyget.cH A D13-Mar-20123.4 KiB11320

backtranambig.cH A D24-Aug-20092.3 KiB8742

backtranseq.cH A D24-Aug-20092.1 KiB8138

banana.cH A D02-Sep-20119.1 KiB405309

biosed.cH A D15-Sep-20095.7 KiB254156

btwisted.cH A D15-Jul-20134.4 KiB17394

cachedas.cH A D11-Oct-20115.1 KiB224121

cachedbfetch.cH A D15-Jul-201339.1 KiB1,447920

cacheebeyesearch.cH A D15-Jul-201314.7 KiB599340

cacheensembl.cH A D15-Jul-201310.2 KiB358172

cai.cH A D24-Aug-20091.9 KiB7833

chaos.cH A D11-Dec-20093.9 KiB156105

charge.cH A D11-Oct-20115.6 KiB256148

checktrans.cH A D24-Aug-20097.8 KiB314173

chips.cH A D24-Aug-20092.4 KiB10053

cirdna.cH A D28-Jul-201165.7 KiB2,2811,484

codcmp.cH A D20-Feb-20072.5 KiB9851

codcopy.cH A D20-Feb-20071.4 KiB5314

coderet.cH A D26-Jun-20128.8 KiB370236

complex.cH A D14-Apr-20103 KiB12677

compseq.cH A D15-Jul-201317.4 KiB661373

cons.cH A D14-Jul-20083.3 KiB12263

consambig.cH A D14-Jul-20082.9 KiB11253

corbatest.cH A D19-Feb-20093.2 KiB12473

cpgplot.cH A D11-Oct-201117.9 KiB739479

cpgreport.cH A D14-Apr-20107.4 KiB305183

cusp.cH A D16-May-20112 KiB8036

cutgextract.cH A D15-Jul-201313.2 KiB530357

cutseq.cH A D20-Feb-20071.9 KiB7229

dan.cH A D11-Oct-201114.5 KiB575362

dastest.cH A D10-Jul-201214.5 KiB615375

dbfetchtest.cH A D10-Jul-20126.4 KiB269136

dbiblast.cH A D14-Jul-201250.1 KiB1,9681,199

dbifasta.cH A D14-Jul-201222.1 KiB841608

dbiflat.cH A D14-Jul-201253.7 KiB1,9761,542

dbigcg.cH A D14-Jul-201246.8 KiB1,8451,359

dbtell.cH A D15-Jul-20137.2 KiB237125

dbxcompress.cH A D24-May-20123.6 KiB12673

dbxedam.cH A D14-Jul-201214.9 KiB548413

dbxfasta.cH A D15-Jul-201318.9 KiB643480

dbxflat.cH A D15-Jul-201324.8 KiB924629

dbxgcg.cH A D24-May-201232.8 KiB1,199827

dbxobo.cH A D15-Jul-201312.7 KiB489329

dbxreport.cH A D15-Jul-201330.3 KiB734611

dbxresource.cH A D15-Jul-201319.8 KiB689544

dbxstat.cH A D15-Jul-20132.5 KiB9041

dbxtax.cH A D15-Jul-201315.2 KiB587387

dbxuncompress.cH A D24-May-20123.7 KiB12671

degapseq.cH A D20-Feb-20071.8 KiB7026

density.cH A D11-Oct-201111.6 KiB546320

descseq.cH A D10-Jun-20082.4 KiB9747

diffseq.cH A D11-Oct-201135.9 KiB1,149691

distmat.cH A D12-Oct-200934.7 KiB1,5221,000

domtesta.cH A D15-Jul-20131.7 KiB6420

domtestb.cH A D15-Jul-20135.1 KiB19067

domtestc.cH A D15-Jul-20132.9 KiB9141

domtestd.cH A D15-Jul-20133.8 KiB12360

dotmatcher.cH A D11-Oct-201111.9 KiB522362

dotpath.cH A D11-Oct-20117.3 KiB287172

dottup.cH A D11-Oct-20119.9 KiB394250

dreg.cH A D15-Jul-20132.7 KiB9853

drfinddata.cH A D15-Jul-20136.3 KiB20593

drfindformat.cH A D15-Jul-20136.3 KiB20293

drfindid.cH A D15-Jul-20136.3 KiB20293

drfindresource.cH A D15-Jul-20136.6 KiB21297

drget.cH A D18-Dec-20103.3 KiB10819

drtext.cH A D26-May-20113.4 KiB10819

edamclean.cH A D06-Oct-201060.3 KiB1,7791,030

edamdef.cH A D15-Jul-20136 KiB21194

edamhasinput.cH A D15-Jul-20136.9 KiB226117

edamhasoutput.cH A D15-Jul-20136.9 KiB226117

edamisformat.cH A D15-Jul-20136.9 KiB226117

edamisid.cH A D15-Jul-20136.9 KiB226117

edamname.cH A D15-Jul-20136.1 KiB21698

edialign.cH A D26-Jun-2012206.8 KiB9,0205,555

einverted.cH A D20-Mar-201218.4 KiB708494

emboss.default.templateH A D03-May-202219.7 KiB630493

emboss.standardH A D15-Jul-201324 KiB837766

embossdata.cH A D01-Dec-20097.6 KiB330186

embossupdate.cH A D15-Jul-20135.8 KiB210142

embossversion.cH A D24-Jul-201213 KiB440365

emma.cH A D03-Aug-201112.4 KiB511338

emowse.cH A D15-Jul-201325.9 KiB1,320823

ensembltest.cH A D15-Jul-2013119.4 KiB4,2722,498

entrails.cH A D10-Jun-20112.7 KiB8949

entrailsbook.cH A D03-Nov-20102.6 KiB9446

entrailshtml.cH A D03-Nov-20102.6 KiB9446

entrailswiki.cH A D03-Nov-20102.6 KiB9446

entret.cH A D10-Jun-20081.7 KiB6123

epestfind.cH A D15-Jul-201329.6 KiB910501

eprimer3.cH A D15-Jul-201338.6 KiB1,273693

eprimer32.cH A D15-Jul-201342.4 KiB1,374768

equicktandem.cH A D26-Aug-20116.6 KiB282155

est2genome.cH A D14-Oct-200913.9 KiB523334

etandem.cH A D26-Aug-201112 KiB536330

extractalign.cH A D21-May-20072.4 KiB8535

extractfeat.cH A D15-Jul-201328.6 KiB982562

extractseq.cH A D06-Jul-20113.5 KiB13770

featcopy.cH A D26-May-20111.5 KiB5819

featmerge.cH A D03-Jul-20121.6 KiB5818

featreport.cH A D14-Jul-20081.5 KiB5617

feattext.cH A D26-May-20111.6 KiB5819

findkm.cH A D11-Dec-20099.5 KiB400203

freak.cH A D11-Oct-20114.1 KiB181119

fuzznuc.cH A D04-Oct-20112.4 KiB8140

fuzzpro.cH A D15-Jul-20132.2 KiB8239

fuzztran.cH A D04-Oct-20118.5 KiB303214

garnier.cH A D26-Aug-201123.2 KiB853606

geecee.cH A D19-May-20061.8 KiB6927

getorf.cH A D15-Jul-201319 KiB735427

godef.cH A D15-Jul-20136 KiB21194

goname.cH A D15-Jul-20136.1 KiB21698

helixturnhelix.cH A D14-Jul-201211.5 KiB560369

histogramtest.cH A D11-Dec-20093.4 KiB15089

hmoment.cH A D11-Oct-20117.5 KiB328191

iep.cH A D15-Jul-20135.7 KiB235163

infoalign.cH A D14-Apr-201017.4 KiB686409

infoassembly.cH A D14-Jul-201230.1 KiB1,193683

infobase.cH A D14-Apr-20102.3 KiB8838

inforesidue.cH A D14-Apr-20103.7 KiB13577

infoseq.cH A D23-Jun-201012.4 KiB498339

intconv.cH A D26-Jun-20084.7 KiB240143

isochore.cH A D25-Jan-20106.7 KiB282118

jaspextract.cH A D27-Sep-201111 KiB479257

jaspscan.cH A D14-Jul-201230.1 KiB1,411841

jembossctl.cH A D15-Jul-201383.5 KiB4,1062,780

lindna.cH A D11-Jul-201154.8 KiB2,0001,277

listor.cH A D14-Feb-20076.8 KiB271144

makenucseq.cH A D14-Jul-20125.5 KiB213107

makeprotseq.cH A D14-Jul-20127.1 KiB286151

marscan.cH A D11-Oct-201118.6 KiB731424

martattributes.cH A D16-Mar-20113.4 KiB13771

martdatasets.cH A D16-Mar-20113.2 KiB13058

martfilters.cH A D16-Mar-20112.7 KiB11452

martquery.cH A D26-May-20113.1 KiB12861

martregistry.cH A D16-Mar-20112.5 KiB10449

martseqs.cH A D16-Mar-20115.1 KiB195118

maskambignuc.cH A D14-Jul-20081.5 KiB5818

maskambigprot.cH A D14-Jul-20081.5 KiB5818

maskfeat.cH A D15-Jul-20134.9 KiB19286

maskseq.cH A D24-Aug-20092.4 KiB8436

matcher.cH A D14-Apr-201034.5 KiB1,5811,067

megamerger.cH A D10-Jun-200810.5 KiB363237

merger.cH A D08-Jan-201014 KiB553337

msbar.cH A D08-Jan-201014 KiB616357

mwcontam.cH A D14-Jul-20124.9 KiB228127

mwfilter.cH A D26-Jun-20089.4 KiB427240

needle.cH A D22-Jul-20124.8 KiB203133

needleall.cH A D22-Jul-20126.7 KiB239167

newcoils.cH A D19-Feb-200910.1 KiB461318

newcpgreport.cH A D20-Jan-201013.2 KiB544326

newcpgseek.cH A D31-Jan-20075.6 KiB244126

newseq.cH A D20-Feb-20072.1 KiB8034

nohtml.cH A D14-Apr-20101.8 KiB6621

noreturn.cH A D26-Jun-20082.8 KiB11769

nospace.cH A D11-Jun-20102.3 KiB8438

notab.cH A D14-Apr-20102.5 KiB9045

notseq.cH A D24-Aug-20093.8 KiB14976

nthseq.cH A D21-Oct-20101.8 KiB7027

nthseqset.cH A D08-Jul-20091.9 KiB7230

octanol.cH A D15-Jul-20136.9 KiB289195

oddcomp.cH A D15-Jul-201310.8 KiB448260

ontocount.cH A D16-Mar-20114.4 KiB15051

ontoget.cH A D16-Mar-20114.4 KiB15253

ontogetcommon.cH A D10-Jul-20126.9 KiB229125

ontogetdown.cH A D16-Mar-20114.8 KiB16857

ontogetobsolete.cH A D16-Mar-20114.4 KiB15254

ontogetroot.cH A D16-Mar-20114.9 KiB18079

ontogetsibs.cH A D16-Mar-20115.3 KiB18979

ontogetup.cH A D16-Mar-20114.8 KiB16556

ontoisobsolete.cH A D18-Dec-20103.3 KiB10717

ontotext.cH A D26-May-20114.4 KiB15253

origsplitter.cH A D10-Jun-20084.2 KiB16686

origunion.cH A D06-Jul-20071.8 KiB6928

palindrome.cH A D26-Jun-200811.9 KiB483256

pasteseq.cH A D31-Jan-20072.6 KiB9133

patmatdb.cH A D24-Aug-20093.6 KiB15482

patmatmotifs.cH A D26-Aug-20115.5 KiB225151

patmattest.cH A D19-Feb-20093 KiB11562

pepcoil.cH A D26-Aug-201112.6 KiB559365

pepdigest.cH A D26-Aug-20118.3 KiB343226

pepinfo.cH A D16-Mar-201113.8 KiB568337

pepnet.cH A D11-Dec-20096.2 KiB288170

pepstats.cH A D15-Jul-20136.9 KiB273179

pepwheel.cH A D08-Nov-20117.1 KiB319194

pepwindow.cH A D15-Jul-20137.1 KiB292178

pepwindowall.cH A D15-Jul-20138.4 KiB359238

plotcon.cH A D08-Jan-20106.4 KiB264138

plotorf.cH A D11-Dec-20096.6 KiB313195

polydot.cH A D11-Oct-20117.4 KiB301196

preg.cH A D15-Jul-20132.3 KiB8341

prettyplot.cH A D03-Oct-201133.5 KiB1,369979

prettyseq.cH A D03-Sep-200911 KiB529332

prima.cH A D11-Oct-201140.7 KiB1,7821,117

primers.cH A D15-Jul-201334.6 KiB1,194378

primersearch.cH A D15-Jul-201321.6 KiB853489

printsextract.cH A D14-Apr-201013.1 KiB582320

profit.cH A D08-Jan-200914.1 KiB595371

prophecy.cH A D08-Jan-201015.7 KiB698466

prophet.cH A D04-Jun-201011.1 KiB442251

prosextract.cH A D26-Jun-20085.1 KiB248163

pscan.cH A D19-Feb-20099.9 KiB482340

psiphi.cH A D27-Sep-201125.6 KiB994553

rebaseextract.cH A D15-Jul-201316.2 KiB727527

recoder.cH A D10-Jul-201222.5 KiB841497

redata.cH A D16-Mar-20117.2 KiB321216

refseqget.cH A D27-Sep-20113.2 KiB10514

remap.cH A D15-Jul-201336.7 KiB1,419839

restover.cH A D15-Jul-201313 KiB559375

restrict.cH A D15-Jul-201324.8 KiB1,033724

revseq.cH A D03-Aug-20112.2 KiB8740

seealso.cH A D10-Jun-20083.4 KiB12865

seqcount.cH A D26-Aug-20101.5 KiB6121

seqinfo.cH A D19-May-20062.2 KiB8745

seqmatchall.cH A D11-Oct-20114.2 KiB16679

seqret.cH A D10-Jun-20081.6 KiB6424

seqretall.cH A D06-Jul-20071.6 KiB5918

seqretallfeat.cH A D06-Jul-20071.6 KiB6322

seqretset.cH A D06-Jul-20071.5 KiB5515

seqretsetall.cH A D07-Apr-20091.6 KiB5919

seqretsingle.cH A D14-Apr-2010578 3215

seqretsplit.cH A D16-Mar-20113.6 KiB14674

seqrettype.cH A D10-Jun-20081.6 KiB6121

seqxref.cH A D26-May-20111.9 KiB7531

seqxrefget.cH A D11-Oct-20116 KiB169118

server.biomartH A D23-Jun-201158.1 KiB2,2871,956

server.dasregistryH A D08-Jul-2011488.5 KiB15,78214,558

server.dbfetchH A D15-Jul-201331.2 KiB817765

server.dkfzH A D21-Apr-20112 KiB5956

server.ebeyeH A D15-Jul-201329.1 KiB561497

server.ensemblH A D15-Jul-201331.4 KiB1,3821,181

server.ensemblgenomesH A D15-Jul-201399 KiB4,4673,615

server.entrezH A D15-Jul-201380.3 KiB1,6621,611

server.mrsH A D21-Apr-20111.3 KiB143107

server.mrs3H A D21-Apr-20111.3 KiB143107

server.mrs4H A D21-Apr-20111.3 KiB143107

server.srsH A D15-Jul-201320.8 KiB626587

server.wsdbfetchH A D15-Jul-201329.9 KiB817765

servertell.cH A D15-Jul-20138 KiB263146

showalign.cH A D11-Jun-201035 KiB1,311758

showdb.cH A D15-Jul-201348.1 KiB1,5851,114

showfeat.cH A D15-Jul-201331.6 KiB1,077649

showorf.cH A D24-Aug-200913.4 KiB693463

showpep.cH A D15-Jul-201317.9 KiB610348

showseq.cH A D15-Jul-201326.8 KiB896548

showserver.cH A D15-Jul-201332.3 KiB1,115742

shuffleseq.cH A D31-Jan-20071.9 KiB7031

sigcleave.cH A D26-Aug-201110.5 KiB491346

silent.cH A D26-Aug-201120 KiB778475

sirna.cH A D26-Aug-201137.1 KiB1,105429

sixpack.cH A D10-Jun-200811.2 KiB423264

sizeseq.cH A D14-Apr-20102 KiB7330

skipredundant.cH A D04-Jun-20105.6 KiB196107

skipseq.cH A D08-May-20071.7 KiB6725

splitsource.cH A D14-Apr-20108.2 KiB301160

splitter.cH A D14-Apr-20108 KiB295152

sqltest.cH A D27-Sep-20114.1 KiB15793

stretcher.cH A D14-Apr-201015.7 KiB705413

stssearch.cH A D15-Jul-20136.3 KiB275152

supermatcher.cH A D10-Jul-201210.7 KiB401247

syco.cH A D11-Dec-20095.5 KiB257181

taxget.cH A D16-Mar-20114 KiB14142

taxgetdown.cH A D22-Jun-20114.3 KiB15251

taxgetrank.cH A D16-Mar-20115 KiB17370

taxgetspecies.cH A D16-Mar-20114.2 KiB14848

taxgetup.cH A D16-Mar-20114.5 KiB15654

tcode.cH A D11-Oct-201117 KiB749442

testplot.cH A D14-Apr-20104.5 KiB17395

textget.cH A D12-Jan-20113.3 KiB10819

textsearch.cH A D10-Jun-20085.3 KiB237145

tfextract.cH A D24-Jun-20105.5 KiB238167

tfm.cH A D10-Nov-20108.7 KiB369230

tfscan.cH A D26-Aug-20117 KiB280184

tmap.cH A D26-Aug-201130.9 KiB1,417837

tranalign.cH A D09-Mar-20117 KiB239131

transeq.cH A D15-Jul-20137.2 KiB285165

treetypedisplay.cH A D11-Dec-20092.1 KiB9051

trimest.cH A D14-Apr-20106.3 KiB254139

trimseq.cH A D10-Jun-20087.3 KiB287156

trimspace.cH A D14-Apr-20101.8 KiB6821

twofeat.cH A D15-Jul-201328.4 KiB1,117610

union.cH A D15-Jul-20137.2 KiB281165

urlget.cH A D22-Jun-20113.2 KiB10819

variationget.cH A D19-Dec-20113.5 KiB11423

vectorstrip.cH A D15-Jul-201327.2 KiB1,035561

water.cH A D22-Jul-20124.6 KiB195120

whichdb.cH A D15-Jul-20133.7 KiB15598

wobble.cH A D04-Jun-20107.1 KiB350207

wordcount.cH A D14-Oct-20092.1 KiB7627

wordfinder.cH A D10-Jul-201214.4 KiB574349

wordmatch.cH A D10-Jul-20129.5 KiB303212

wossdata.cH A D18-Dec-20103.4 KiB11260

wossinput.cH A D18-Dec-20103.3 KiB11160

wossname.cH A D18-Dec-20103.3 KiB11160

wossoperation.cH A D18-Dec-20103.4 KiB11260

wossoutput.cH A D18-Dec-20103.3 KiB11160

wossparam.cH A D18-Dec-20103.3 KiB11160

wosstopic.cH A D18-Dec-20103.4 KiB11260

xmlget.cH A D03-Sep-20123.2 KiB10819

xmltext.cH A D14-Nov-20123.3 KiB11119

yank.cH A D08-May-20071.5 KiB5415