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Searched defs:psi_options (Results 1 – 16 of 16) sorted by relevance

/dports/biology/ncbi-toolkit/ncbi/algo/blast/api/
H A Dblast_prelim.c57 const PSIBlastOptions* psi_options, in BlastPrelimSearchThreadDataInit()
H A Dblast_options_api.h65 PSIBlastOptions* psi_options; /**< Options specific to PSI BLAST */ member
H A Dblast_prelim.h72 const PSIBlastOptions* psi_options; /**< Options specific to PSI BLAST. */ member
H A Dblast_options_api.c55 PSIBlastOptions* psi_options = NULL; in SBlastOptionsNew() local
H A Dblast_api.c335 const PSIBlastOptions* psi_options = options->psi_options; in s_BlastThreadManager() local
/dports/biology/ncbi-toolkit/ncbi/algo/blast/core/
H A Dblast_traceback.c1041 const PSIBlastOptions* psi_options, in s_RPSComputeTraceback()
1371 const PSIBlastOptions* psi_options, in BLAST_ComputeTraceback()
1424 const PSIBlastOptions * psi_options, in BLAST_ComputeTraceback_MT()
1759 const PSIBlastOptions* psi_options, BlastScoreBlk* sbp, in Blast_RunTracebackSearch()
1779 const PSIBlastOptions* psi_options, BlastScoreBlk* sbp, in Blast_RunTracebackSearchWithInterrupt()
H A Dblast_options.c1503 Int2 PSIBlastOptionsNew(PSIBlastOptions** psi_options) in PSIBlastOptionsNew()
1526 Int2 PSIBlastOptionsValidate(const PSIBlastOptions* psi_options, in PSIBlastOptionsValidate()
1551 PSIBlastOptions* PSIBlastOptionsFree(PSIBlastOptions* psi_options) in PSIBlastOptionsFree()
1595 PSIBlastOptions** psi_options, in BLAST_InitDefaultOptions()
H A Dblast_engine.c1468 const PSIBlastOptions* psi_options, in BLAST_PreliminarySearchEngine()
1736 const PSIBlastOptions* psi_options, in Blast_RunPreliminarySearch()
1759 const PSIBlastOptions* psi_options, in Blast_RunPreliminarySearchWithInterrupt()
1840 const PSIBlastOptions* psi_options, in Blast_RunFullSearch()
/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/algo/blast/core/
H A Dblast_traceback.c1057 const PSIBlastOptions* psi_options, in s_RPSComputeTraceback()
1389 const PSIBlastOptions* psi_options, in BLAST_ComputeTraceback()
1442 const PSIBlastOptions * psi_options, in BLAST_ComputeTraceback_MT()
1780 const PSIBlastOptions* psi_options, BlastScoreBlk* sbp, in Blast_RunTracebackSearch()
1800 const PSIBlastOptions* psi_options, BlastScoreBlk* sbp, in Blast_RunTracebackSearchWithInterrupt()
H A Dblast_options.c1537 Int2 PSIBlastOptionsNew(PSIBlastOptions** psi_options) in PSIBlastOptionsNew()
1560 Int2 PSIBlastOptionsValidate(const PSIBlastOptions* psi_options, in PSIBlastOptionsValidate()
1585 PSIBlastOptions* PSIBlastOptionsFree(PSIBlastOptions* psi_options) in PSIBlastOptionsFree()
1629 PSIBlastOptions** psi_options, in BLAST_InitDefaultOptions()
H A Dblast_engine.c1345 const PSIBlastOptions* psi_options, in BLAST_PreliminarySearchEngine()
1622 const PSIBlastOptions* psi_options, in Blast_RunPreliminarySearch()
1645 const PSIBlastOptions* psi_options, in Blast_RunPreliminarySearchWithInterrupt()
1737 const PSIBlastOptions* psi_options, in Blast_RunFullSearch()
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/blast/core/
H A Dblast_traceback.c1057 const PSIBlastOptions* psi_options, in s_RPSComputeTraceback()
1389 const PSIBlastOptions* psi_options, in BLAST_ComputeTraceback()
1442 const PSIBlastOptions * psi_options, in BLAST_ComputeTraceback_MT()
1780 const PSIBlastOptions* psi_options, BlastScoreBlk* sbp, in Blast_RunTracebackSearch()
1800 const PSIBlastOptions* psi_options, BlastScoreBlk* sbp, in Blast_RunTracebackSearchWithInterrupt()
H A Dblast_options.c1537 Int2 PSIBlastOptionsNew(PSIBlastOptions** psi_options) in PSIBlastOptionsNew()
1560 Int2 PSIBlastOptionsValidate(const PSIBlastOptions* psi_options, in PSIBlastOptionsValidate()
1585 PSIBlastOptions* PSIBlastOptionsFree(PSIBlastOptions* psi_options) in PSIBlastOptionsFree()
1629 PSIBlastOptions** psi_options, in BLAST_InitDefaultOptions()
H A Dblast_engine.c1345 const PSIBlastOptions* psi_options, in BLAST_PreliminarySearchEngine()
1622 const PSIBlastOptions* psi_options, in Blast_RunPreliminarySearch()
1645 const PSIBlastOptions* psi_options, in Blast_RunPreliminarySearchWithInterrupt()
1737 const PSIBlastOptions* psi_options, in Blast_RunFullSearch()
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/blast/unit_tests/api/
H A Dredoalignment_unit_test.cpp354 PSIBlastOptions* psi_options=NULL; in runRedoAlignmentCoreUnitTest() local
/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/algo/blast/unit_tests/api/
H A Dredoalignment_unit_test.cpp354 PSIBlastOptions* psi_options=NULL; in runRedoAlignmentCoreUnitTest() local