/dports/biology/ncbi-toolkit/ncbi/algo/blast/api/ |
H A D | blast_prelim.c | 57 const PSIBlastOptions* psi_options, in BlastPrelimSearchThreadDataInit()
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H A D | blast_options_api.h | 65 PSIBlastOptions* psi_options; /**< Options specific to PSI BLAST */ member
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H A D | blast_prelim.h | 72 const PSIBlastOptions* psi_options; /**< Options specific to PSI BLAST. */ member
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H A D | blast_options_api.c | 55 PSIBlastOptions* psi_options = NULL; in SBlastOptionsNew() local
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H A D | blast_api.c | 335 const PSIBlastOptions* psi_options = options->psi_options; in s_BlastThreadManager() local
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/dports/biology/ncbi-toolkit/ncbi/algo/blast/core/ |
H A D | blast_traceback.c | 1041 const PSIBlastOptions* psi_options, in s_RPSComputeTraceback() 1371 const PSIBlastOptions* psi_options, in BLAST_ComputeTraceback() 1424 const PSIBlastOptions * psi_options, in BLAST_ComputeTraceback_MT() 1759 const PSIBlastOptions* psi_options, BlastScoreBlk* sbp, in Blast_RunTracebackSearch() 1779 const PSIBlastOptions* psi_options, BlastScoreBlk* sbp, in Blast_RunTracebackSearchWithInterrupt()
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H A D | blast_options.c | 1503 Int2 PSIBlastOptionsNew(PSIBlastOptions** psi_options) in PSIBlastOptionsNew() 1526 Int2 PSIBlastOptionsValidate(const PSIBlastOptions* psi_options, in PSIBlastOptionsValidate() 1551 PSIBlastOptions* PSIBlastOptionsFree(PSIBlastOptions* psi_options) in PSIBlastOptionsFree() 1595 PSIBlastOptions** psi_options, in BLAST_InitDefaultOptions()
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H A D | blast_engine.c | 1468 const PSIBlastOptions* psi_options, in BLAST_PreliminarySearchEngine() 1736 const PSIBlastOptions* psi_options, in Blast_RunPreliminarySearch() 1759 const PSIBlastOptions* psi_options, in Blast_RunPreliminarySearchWithInterrupt() 1840 const PSIBlastOptions* psi_options, in Blast_RunFullSearch()
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/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/algo/blast/core/ |
H A D | blast_traceback.c | 1057 const PSIBlastOptions* psi_options, in s_RPSComputeTraceback() 1389 const PSIBlastOptions* psi_options, in BLAST_ComputeTraceback() 1442 const PSIBlastOptions * psi_options, in BLAST_ComputeTraceback_MT() 1780 const PSIBlastOptions* psi_options, BlastScoreBlk* sbp, in Blast_RunTracebackSearch() 1800 const PSIBlastOptions* psi_options, BlastScoreBlk* sbp, in Blast_RunTracebackSearchWithInterrupt()
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H A D | blast_options.c | 1537 Int2 PSIBlastOptionsNew(PSIBlastOptions** psi_options) in PSIBlastOptionsNew() 1560 Int2 PSIBlastOptionsValidate(const PSIBlastOptions* psi_options, in PSIBlastOptionsValidate() 1585 PSIBlastOptions* PSIBlastOptionsFree(PSIBlastOptions* psi_options) in PSIBlastOptionsFree() 1629 PSIBlastOptions** psi_options, in BLAST_InitDefaultOptions()
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H A D | blast_engine.c | 1345 const PSIBlastOptions* psi_options, in BLAST_PreliminarySearchEngine() 1622 const PSIBlastOptions* psi_options, in Blast_RunPreliminarySearch() 1645 const PSIBlastOptions* psi_options, in Blast_RunPreliminarySearchWithInterrupt() 1737 const PSIBlastOptions* psi_options, in Blast_RunFullSearch()
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/blast/core/ |
H A D | blast_traceback.c | 1057 const PSIBlastOptions* psi_options, in s_RPSComputeTraceback() 1389 const PSIBlastOptions* psi_options, in BLAST_ComputeTraceback() 1442 const PSIBlastOptions * psi_options, in BLAST_ComputeTraceback_MT() 1780 const PSIBlastOptions* psi_options, BlastScoreBlk* sbp, in Blast_RunTracebackSearch() 1800 const PSIBlastOptions* psi_options, BlastScoreBlk* sbp, in Blast_RunTracebackSearchWithInterrupt()
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H A D | blast_options.c | 1537 Int2 PSIBlastOptionsNew(PSIBlastOptions** psi_options) in PSIBlastOptionsNew() 1560 Int2 PSIBlastOptionsValidate(const PSIBlastOptions* psi_options, in PSIBlastOptionsValidate() 1585 PSIBlastOptions* PSIBlastOptionsFree(PSIBlastOptions* psi_options) in PSIBlastOptionsFree() 1629 PSIBlastOptions** psi_options, in BLAST_InitDefaultOptions()
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H A D | blast_engine.c | 1345 const PSIBlastOptions* psi_options, in BLAST_PreliminarySearchEngine() 1622 const PSIBlastOptions* psi_options, in Blast_RunPreliminarySearch() 1645 const PSIBlastOptions* psi_options, in Blast_RunPreliminarySearchWithInterrupt() 1737 const PSIBlastOptions* psi_options, in Blast_RunFullSearch()
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/blast/unit_tests/api/ |
H A D | redoalignment_unit_test.cpp | 354 PSIBlastOptions* psi_options=NULL; in runRedoAlignmentCoreUnitTest() local
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/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/algo/blast/unit_tests/api/ |
H A D | redoalignment_unit_test.cpp | 354 PSIBlastOptions* psi_options=NULL; in runRedoAlignmentCoreUnitTest() local
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