| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/blast/unit_tests/api/ |
| H A D | queryinfo_unit_test.cpp | 65 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE() local
90 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE() local
114 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE() local
138 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE() local
162 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE() local
199 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE() local
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| H A D | scoreblk_unit_test.cpp | 77 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE() local
122 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE() local
175 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE() local
250 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE() local
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| H A D | blastoptions_unit_test.cpp | 348 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE() local
517 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE() local
605 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE() local
877 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE() local
954 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE() local
1025 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE() local
1093 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE() local
1181 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE() local
1259 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE() local
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| H A D | blastextend_unit_test.cpp | 273 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_FIXTURE_TEST_SUITE() local
360 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE() local
473 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE() local
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| H A D | traceback_unit_test.cpp | 225 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE() local
360 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE() local
493 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE() local
620 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE() local
863 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE() local
966 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE() local
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| H A D | rmblast_traceback_unit_test.cpp | 216 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_FIXTURE_TEST_SUITE() local
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| H A D | linkhsp_unit_test.cpp | 254 ENa_strand strand_opt = options.GetStrandOption(); in setupLinkHspInputTblastn() local
452 ENa_strand strand_opt = options.GetStrandOption(); in setupCutoffScores() local
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| H A D | blastsetup_unit_test.cpp | 888 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE() local
1336 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE() local
1375 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE() local
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| H A D | redoalignment_unit_test.cpp | 246 ENa_strand strand_opt = kOpts.GetStrandOption(); in runRedoAlignmentCoreUnitTest() local
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| H A D | blastfilter_unit_test.cpp | 456 ENa_strand strand_opt = kOpts.GetStrandOption(); in setupQueryStructures() local
1581 ENa_strand strand_opt = kOpts.GetStrandOption(); in setupQueryInfoForOffsetTranslation() local
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| H A D | split_query_unit_test.cpp | 216 ENa_strand strand_opt = (strand != NULL) in x_PrepareBlastQueryStructures() local
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| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/algo/blast/unit_tests/api/ |
| H A D | queryinfo_unit_test.cpp | 65 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE() local
90 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE() local
114 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE() local
138 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE() local
162 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE() local
199 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE() local
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| H A D | scoreblk_unit_test.cpp | 77 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE() local
122 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE() local
175 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE() local
250 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE() local
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| H A D | blastoptions_unit_test.cpp | 348 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE() local
517 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE() local
605 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE() local
877 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE() local
954 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE() local
1025 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE() local
1093 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE() local
1181 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE() local
1259 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE() local
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| H A D | blastextend_unit_test.cpp | 273 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_FIXTURE_TEST_SUITE() local
360 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE() local
473 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE() local
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| H A D | traceback_unit_test.cpp | 225 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE() local
360 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE() local
493 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE() local
620 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE() local
863 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE() local
966 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE() local
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| H A D | rmblast_traceback_unit_test.cpp | 216 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_FIXTURE_TEST_SUITE() local
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| H A D | linkhsp_unit_test.cpp | 254 ENa_strand strand_opt = options.GetStrandOption(); in setupLinkHspInputTblastn() local
452 ENa_strand strand_opt = options.GetStrandOption(); in setupCutoffScores() local
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| H A D | blastsetup_unit_test.cpp | 888 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE() local
1336 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE() local
1375 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE() local
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| H A D | redoalignment_unit_test.cpp | 246 ENa_strand strand_opt = kOpts.GetStrandOption(); in runRedoAlignmentCoreUnitTest() local
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| H A D | blastfilter_unit_test.cpp | 456 ENa_strand strand_opt = kOpts.GetStrandOption(); in setupQueryStructures() local
1581 ENa_strand strand_opt = kOpts.GetStrandOption(); in setupQueryInfoForOffsetTranslation() local
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/blast/api/ |
| H A D | blast_setup_cxx.cpp | 99 objects::ENa_strand strand_opt) in s_BlastSetup_GetStrand()
119 objects::ENa_strand strand_opt) in BlastSetup_GetStrand()
129 ENa_strand strand_opt, in s_AdjustFirstContext()
155 objects::ENa_strand strand_opt, in SetupQueryInfo_OMF()
489 objects::ENa_strand strand_opt, in SetupQueries_OMF()
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| H A D | blast_objmgr_tools.cpp | 394 objects::ENa_strand strand_opt, in SetupQueryInfo()
405 objects::ENa_strand strand_opt, in SetupQueries()
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| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/algo/blast/api/ |
| H A D | blast_setup_cxx.cpp | 99 objects::ENa_strand strand_opt) in s_BlastSetup_GetStrand()
119 objects::ENa_strand strand_opt) in BlastSetup_GetStrand()
129 ENa_strand strand_opt, in s_AdjustFirstContext()
155 objects::ENa_strand strand_opt, in SetupQueryInfo_OMF()
489 objects::ENa_strand strand_opt, in SetupQueries_OMF()
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| H A D | blast_objmgr_tools.cpp | 394 objects::ENa_strand strand_opt, in SetupQueryInfo()
405 objects::ENa_strand strand_opt, in SetupQueries()
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