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Searched refs:spot_id (Results 26 – 45 of 45) sorted by relevance

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/dports/biology/sra-tools/sra-tools-2.11.0/tools/qual-recalib-stat/
H A Dstat_mod_2.h84 uint32_t spot_id; member
H A Dstat_mod_1.c669 uint32_t spot_id = *( ( uint32_t * )data->rd_col[ RIDX_SEQ_SPOT_ID ].base ); in extract_spotgroup_statistic() local
670 rc = query_spot_pos( data->sequence, seq_read_id, spot_id, &base_pos_offset ); in extract_spotgroup_statistic()
/dports/devel/py-moto/moto-2.2.16/tests/test_ec2/
H A Dtest_spot_instances.py189 spot_id = rsi["SpotInstanceRequests"][0]["SpotInstanceRequestId"]
191 requests = client.describe_spot_instance_requests(SpotInstanceRequestIds=[spot_id])[
216 requests = client.describe_spot_instance_requests(SpotInstanceRequestIds=[spot_id])[
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/sra/readers/sra/test/
H A Dvdb_test.cpp1263 Uint8 spot_id = 0; in Run() local
1277 if ( !spot_id ) { in Run()
1278 spot_id = it.GetShortId1(); in Run()
1315 if ( spot_id ) { in Run()
1316 CCSraShortReadIterator it(csra_db, spot_id, read_id); in Run()
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/sra/data_loaders/csra/impl/
H A Dcsraloader_impl.hpp415 bool IsValidReadId(TVDBRowId spot_id, Uint4 read_id,
529 CRef<CCSRABlobId> GetReadsBlobId(const TFileLock& lock, TVDBRowId spot_id);
/dports/biology/sra-tools/sra-tools-2.11.0/tools/sra-pileup/
H A Dsam-dump.c1203 size_t spot_group_len, int64_t spot_id ) in DumpName() argument
1208 rc = KOutMsg( "%.*s-1:%lu", spot_group_len, spot_group, spot_id ); in DumpName()
1310 … int64_t const spot_id = cols[alg_SEQ_SPOT_ID].len > 0 ? cols[alg_SEQ_SPOT_ID].base.i64[0] : 0; in DumpAlignedFastX() local
1332 rc = DumpName( qname, qname_len, '.', cols[ nm ].base.str, cols[ nm ].len, spot_id); in DumpAlignedFastX()
1454 int64_t const spot_id = cols[alg_SEQ_SPOT_ID].len > 0 ? cols[alg_SEQ_SPOT_ID].base.i64[0] : 0; in DumpAlignedSAM() local
1461 if ( align_filter == NULL && spot_id && read_id && ctx->seq.cols ) in DumpAlignedSAM()
1465 rc = Cursor_Read(&ctx->seq, spot_id, seq_READ_FILTER, 1); in DumpAlignedSAM()
1498 rc = DumpName( qname, qname_len, '.', cols[ nm ].base.str, cols[ nm ].len, spot_id ); in DumpAlignedSAM()
3326 int64_t spot_id = (int64_t) key; in FlushUnalignedRead_cb() local
3329 rc = Cursor_Read( &ctx->seq, spot_id, seq_PRIMARY_ALIGNMENT_ID, ~(unsigned)0 ); in FlushUnalignedRead_cb()
[all …]
/dports/print/ghostscript7-base/ghostscript-7.07/src/
H A Dgdevpdfg.c486 long id, spot_id; in pdf_write_spot_halftone() local
532 pdf_write_spot_function(pdev, porder, &spot_id); in pdf_write_spot_halftone()
542 pprintld1(s, "/SpotFunction %ld 0 R", spot_id); in pdf_write_spot_halftone()
/dports/print/ghostscript7-x11/ghostscript-7.07/src/
H A Dgdevpdfg.c486 long id, spot_id; in pdf_write_spot_halftone() local
532 pdf_write_spot_function(pdev, porder, &spot_id); in pdf_write_spot_halftone()
542 pprintld1(s, "/SpotFunction %ld 0 R", spot_id); in pdf_write_spot_halftone()
/dports/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ncbi/
H A Dspotname.vschema241 * v1 - maintains a 1->1 key=>spot_id relationship
245 * v2 - maintains a 1->1 key=>spot_id-range relationship
/dports/biology/ncbi-vdb/ncbi-vdb-2.11.0/interfaces/ncbi/
H A Dspotname.vschema241 * v1 - maintains a 1->1 key=>spot_id relationship
245 * v2 - maintains a 1->1 key=>spot_id-range relationship
/dports/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs/
H A DCSRA1_Alignment.c1258 …TRY ( int64_t spot_id = NGS_CursorGetInt64 ( self -> secondary_curs, ctx, id, align_SEQ_SPOT_ID ) ) in SetRowId()
1260 if ( spot_id <= 0 ) in SetRowId()
/dports/biology/ncbi-vdb/ncbi-vdb-2.11.0/libs/ngs/
H A DCSRA1_Alignment.c1258 …TRY ( int64_t spot_id = NGS_CursorGetInt64 ( self -> secondary_curs, ctx, id, align_SEQ_SPOT_ID ) ) in SetRowId()
1260 if ( spot_id <= 0 ) in SetRowId()
/dports/print/ghostscript9-x11/ghostscript-9.06/base/
H A Dgdevpdfg.c910 long spot_id; in pdf_write_spot_halftone() local
954 code = pdf_write_spot_function(pdev, porder, &spot_id); in pdf_write_spot_halftone()
966 pprintld1(s, "/SpotFunction %ld 0 R", spot_id); in pdf_write_spot_halftone()
/dports/print/ghostscript9-base/ghostscript-9.06/base/
H A Dgdevpdfg.c910 long spot_id; in pdf_write_spot_halftone() local
954 code = pdf_write_spot_function(pdev, porder, &spot_id); in pdf_write_spot_halftone()
966 pprintld1(s, "/SpotFunction %ld 0 R", spot_id); in pdf_write_spot_halftone()
/dports/print/ghostscript8-base/ghostscript-8.71/base/
H A Dgdevpdfg.c883 long id, spot_id; in pdf_write_spot_halftone() local
928 code = pdf_write_spot_function(pdev, porder, &spot_id); in pdf_write_spot_halftone()
940 pprintld1(s, "/SpotFunction %ld 0 R", spot_id); in pdf_write_spot_halftone()
/dports/print/ghostscript8-x11/ghostscript-8.71/base/
H A Dgdevpdfg.c883 long id, spot_id; in pdf_write_spot_halftone() local
928 code = pdf_write_spot_function(pdev, porder, &spot_id); in pdf_write_spot_halftone()
940 pprintld1(s, "/SpotFunction %ld 0 R", spot_id); in pdf_write_spot_halftone()
/dports/print/ghostscript9-agpl-base/ghostscript-9.52/devices/vector/
H A Dgdevpdfg.c2391 long spot_id; in pdf_write_spot_halftone() local
2439 code = pdf_write_spot_function(pdev, porder, &spot_id); in pdf_write_spot_halftone()
2451 pprintld1(s, "/SpotFunction %ld 0 R", spot_id); in pdf_write_spot_halftone()
/dports/print/ghostscript9-agpl-x11/ghostscript-9.52/devices/vector/
H A Dgdevpdfg.c2391 long spot_id; in pdf_write_spot_halftone() local
2439 code = pdf_write_spot_function(pdev, porder, &spot_id); in pdf_write_spot_halftone()
2451 pprintld1(s, "/SpotFunction %ld 0 R", spot_id); in pdf_write_spot_halftone()
/dports/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/align/
H A Dalign.vschema481 extern function I64 NCBI:align:get_mate_align_id #1 ( I64 spot_id );
/dports/biology/ncbi-vdb/ncbi-vdb-2.11.0/interfaces/align/
H A Dalign.vschema481 extern function I64 NCBI:align:get_mate_align_id #1 ( I64 spot_id );

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