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Searched refs:AjPFilebuff (Results 1 – 25 of 36) sorted by relevance

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/dports/biology/emboss/EMBOSS-6.6.0/ajax/core/
H A Dajfile.h259 #define AjPFilebuff AjOFilebuff* macro
411 void ajFilebuffDel(AjPFilebuff* pthis);
412 AjPFilebuff ajFilebuffNewNofile(void);
421 AjPFilebuff ajFilebuffNewFromCfile(FILE *fp);
422 AjPFilebuff ajFilebuffNewFromFile(AjPFile file);
423 AjPFilebuff ajFilebuffNewLine(const AjPStr line);
434 void ajFilebuffFix(AjPFilebuff thys);
438 void ajFilebuffLoadAll(AjPFilebuff buff);
444 void ajFilebuffReset(AjPFilebuff thys);
451 AjBool ajFilebuffHtmlPre(AjPFilebuff thys);
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H A Dajfileio.h122 AjBool ajBuffreadLine(AjPFilebuff buff, AjPStr *pdest);
123 AjBool ajBuffreadLinePos(AjPFilebuff buff, AjPStr *pdest,
125 AjBool ajBuffreadLineStore(AjPFilebuff buff, AjPStr* pdest,
127 AjBool ajBuffreadLinePosStore(AjPFilebuff buff, AjPStr* pdest,
129 AjBool ajBuffreadLineTrim(AjPFilebuff buff, AjPStr* pdest);
143 __deprecated void ajFileBuffLoad(AjPFilebuff thys);
144 __deprecated AjBool ajFileBuffGet(AjPFilebuff thys, AjPStr *pdest);
145 __deprecated AjBool ajFileBuffGetL(AjPFilebuff thys, AjPStr *pdest,
147 __deprecated AjBool ajFileBuffGetStore(AjPFilebuff thys, AjPStr* pdest,
149 __deprecated AjBool ajFileBuffGetStoreL(AjPFilebuff thys,
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H A Dajfeatread.h88 const char* type, AjPFilebuff buff);
92 const char* type, AjPFilebuff buff);
95 AjPFilebuff buff);
142 const char* type, AjPFilebuff buff);
146 const char* type, AjPFilebuff buff);
H A Dajfile.c2981 AjPFilebuff thys; in ajFilebuffNewFromFile()
3013 AjPFilebuff thys; in ajFilebuffNewLine()
3155 AjPFilebuff ajFilebuffNewNofile(void) in ajFilebuffNewNofile()
3505 void ajFilebuffDel(AjPFilebuff* Pbuff) in ajFilebuffDel()
3507 AjPFilebuff thys; in ajFilebuffDel()
3571 AjPFilebuff thys; in ajFilebuffReopenFile()
3831 void ajFilebuffFix(AjPFilebuff buff) in ajFilebuffFix()
3876 void ajFilebuffReset(AjPFilebuff buff) in ajFilebuffReset()
3904 void ajFilebuffResetPos(AjPFilebuff buff) in ajFilebuffResetPos()
4360 AjBool ajFilebuffHtmlPre(AjPFilebuff buff) in ajFilebuffHtmlPre()
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H A Dajhttp.h118 AjPFilebuff ajHttpRead(const AjPStr dbhttpver, const AjPStr dbname,
121 AjPFilebuff ajHttpReadPos(const AjPStr dbhttpver, const AjPStr dbname,
124 AjBool ajHttpRedirect(AjPFilebuff buff, AjPStr* host, ajint* port,
H A Dajfileio.c39 static void filebuffLineAdd(AjPFilebuff thys, const AjPStr line);
1888 AjBool ajBuffreadLine(AjPFilebuff buff, AjPStr* Pdest) in ajBuffreadLine()
1914 AjBool ajBuffreadLinePos(AjPFilebuff buff, AjPStr* Pdest, ajlong* Ppos) in ajBuffreadLinePos()
2061 AjBool ajBuffreadLineStore(AjPFilebuff buff, AjPStr* Pdest, in ajBuffreadLineStore()
2097 AjBool ajBuffreadLineTrim(AjPFilebuff buff, AjPStr* Pdest) in ajBuffreadLineTrim()
2131 static void filebuffLineAdd(AjPFilebuff buff, const AjPStr line) in filebuffLineAdd()
2337 __deprecated AjBool ajFileBuffGet(AjPFilebuff thys, AjPStr* pdest) in ajFileBuffGet()
2348 __deprecated AjBool ajFileBuffGetL(AjPFilebuff buff, AjPStr* pdest, in ajFileBuffGetL()
2360 __deprecated AjBool ajFileBuffGetStoreL(AjPFilebuff thys, AjPStr* pdest, in ajFileBuffGetStoreL()
2373 __deprecated AjBool ajFileBuffGetStore(AjPFilebuff thys, AjPStr* pdest, in ajFileBuffGetStore()
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H A Dajftp.h77 AjPFilebuff ajFtpRead(const AjPStr dbname,
H A Dajcod.c65 static AjBool codReadCodehop(AjPCod thys, AjPFilebuff inbuff);
66 static AjBool codReadCutg(AjPCod thys, AjPFilebuff inbuff);
67 static AjBool codReadEmboss(AjPCod thys, AjPFilebuff inbuff);
68 static AjBool codReadGcg(AjPCod thys, AjPFilebuff inbuff);
69 static AjBool codReadSpsum(AjPCod thys, AjPFilebuff inbuff);
70 static AjBool codReadStaden(AjPCod thys, AjPFilebuff inbuff);
149 AjBool (*Read) (AjPCod thys, AjPFilebuff inbuff);
920 AjPFilebuff inbuff = NULL; in ajCodRead()
1232 static AjBool codReadSpsum(AjPCod thys, AjPFilebuff inbuff) in codReadSpsum()
1305 static AjBool codReadCutg(AjPCod thys, AjPFilebuff inbuff) in codReadCutg()
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H A Dajhttp.c1026 AjBool ajHttpRedirect(AjPFilebuff buff, AjPStr* host, ajint* port, AjPStr* path, in ajHttpRedirect()
1122 AjPFilebuff ajHttpRead(const AjPStr dbhttpver, const AjPStr dbname, in ajHttpRead()
1151 AjPFilebuff ajHttpReadPos(const AjPStr dbhttpver, const AjPStr dbname, in ajHttpReadPos()
1162 AjPFilebuff buff = NULL; in ajHttpReadPos()
H A Dajtextdata.h198 AjPFilebuff Filebuff;
H A Dajassemread.c475 AjPFilebuff buff = input->Filebuff; in ajAsseminLoad()
746 AjPFilebuff buff = input->Filebuff; in asseminLoadFmt()
825 AjPFilebuff buff = input->Filebuff; in asseminLoad()
1120 AjPFilebuff buff = NULL; in asseminReadBamHeader()
1267 AjPFilebuff buff = input->Filebuff; in asseminLoadBam()
1690 AjPFilebuff buff = input->Filebuff; in asseminLoadMaf()
1992 AjPFilebuff buff = input->Filebuff; in asseminReadSamHeader()
2131 AjPFilebuff buff = input->Filebuff; in asseminLoadSam()
2219 AjPFilebuff buff = NULL; in asseminReadSamAlignments()
H A Dajtextread.c1428 AjPFilebuff buff = textin->Filebuff; in textinRead()
1712 AjPFilebuff buff; in textinReadText()
1759 AjPFilebuff buff; in textinReadXml()
1805 AjPFilebuff buff; in textinReadEmbl()
1876 AjPFilebuff buff; in textinReadGenbank()
1947 AjPFilebuff buff; in textinReadObo()
2017 AjPFilebuff buff; in textinReadPdb()
H A Dajdom.h526 ajint ajDomReadFilebuff(AjPDomDocument node, AjPFilebuff buff);
527 ajint ajDomReadFilebuffText(AjPDomDocument node, AjPFilebuff buff,
H A Dajftp.c473 AjPFilebuff ajFtpRead(const AjPStr dbname, in ajFtpRead()
480 AjPFilebuff buff = NULL; in ajFtpRead()
H A Dajnexus.h469 AjPNexus ajNexusParse(AjPFilebuff buff);
H A Dajfeatread.c585 const char* type, AjPFilebuff buff) in ajFeattabinNewCSF()
1319 AjPFilebuff buff = feattabin->Input->Filebuff; in feattabinRead()
1630 AjPFilebuff file; in ajFeattableNewRead()
1962 AjPFilebuff inf = feattabin->Input->Filebuff; in featReadDasgff()
2469 AjPFilebuff file = feattabin->Input->Filebuff; in featReadEmbl()
2558 AjPFilebuff file = feattabin->Input->Filebuff; in featReadGenpept()
2609 AjPFilebuff file = feattabin->Input->Filebuff; in featReadRefseq()
2659 AjPFilebuff file = feattabin->Input->Filebuff; in featReadRefseqp()
2707 AjPFilebuff file = feattabin->Input->Filebuff; in featReadPir()
2899 AjPFilebuff file = feattabin->Input->Filebuff; in featReadSwiss()
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H A Dajseqread.c3126 AjPFilebuff buff; in seqReadFasta()
3256 AjPFilebuff buff; in seqReadFastq()
3410 AjPFilebuff buff; in seqReadFastqSanger()
3857 AjPFilebuff buff; in seqReadFastqIllumina()
4065 AjPFilebuff buff; in seqReadFastqSolexa()
4282 AjPFilebuff buff; in seqReadDbId()
4402 AjPFilebuff buff; in seqReadGde()
4493 AjPFilebuff buff; in seqReadNbrf()
4708 AjPFilebuff buff; in seqReadNibble()
4846 AjPFilebuff buff; in seqReadGcg()
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H A Dajvarread.c635 AjPFilebuff buff = input->Filebuff; in ajVarinLoad()
901 AjPFilebuff buff = input->Filebuff; in varinLoadFmt()
982 AjPFilebuff buff = input->Filebuff; in varinLoad()
1277 AjPFilebuff buff= input->Filebuff; in varinLoadBcf()
1432 AjPFilebuff buff; in varinLoadVcf3x()
1668 AjPFilebuff buff = input->Filebuff; in varinLoadVcf40()
1903 AjPFilebuff buff; in varinReadVcf41Header()
2016 AjPFilebuff buff = input->Filebuff; in varinLoadVcf41()
H A Dajpat.c749 AjPFilebuff infile = NULL; in ajPatlistSeqRead()
894 AjPFilebuff infile = NULL; in ajPatlistRegexRead()
/dports/biology/emboss/EMBOSS-6.6.0/ajax/ajaxdb/
H A Dajdas.h226 AjBool ajDasParseRegistry(AjPFilebuff buff, AjPList sources);
227 AjBool ajDasParseEntrypoints(AjPFilebuff buff, AjPList segments);
H A Dajdas.c46 static AjBool dasQueryParse(AjPFilebuff buff, void* results,
397 AjBool ajDasParseRegistry(AjPFilebuff buff, AjPList sources) in ajDasParseRegistry()
419 AjBool ajDasParseEntrypoints(AjPFilebuff buff, AjPList segments) in ajDasParseEntrypoints()
695 static AjBool dasQueryParse(AjPFilebuff buff, void* results, in dasQueryParse()
H A Dajmart.c81 static AjBool martBuffIsXML(AjPFilebuff buff);
100 static AjBool martWriteCacheEntry(AjPMartquery mq, AjPFilebuff buff,
102 static AjBool martReadCacheEntry(AjPMartquery mq, AjPFilebuff *buff,
937 AjPFilebuff buff = NULL; in ajMartregistryParse()
1345 static AjBool martBuffIsXML(AjPFilebuff buff) in martBuffIsXML()
1460 AjPFilebuff buff = NULL; in martParseTabbedDataset()
1961 AjPFilebuff buff = NULL; in martParseTabbedAttributes()
2414 AjPFilebuff buff = NULL; in martParseTabbedFilters()
4538 AjPFilebuff buff = NULL; in ajMartCheckHeader()
4763 static AjBool martWriteCacheEntry(AjPMartquery mq, AjPFilebuff buff, ajint type) in martWriteCacheEntry()
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/dports/biology/emboss/EMBOSS-6.6.0/emboss/
H A Ddastest.c38 static void dastestSaveRawFeatures(AjPFilebuff buff,
80 AjPFilebuff buff = NULL; in main()
471 static void dastestSaveRawFeatures(AjPFilebuff buff, const AjPStr ffname) in dastestSaveRawFeatures()
H A Dcachedas.c55 AjPFilebuff buff = NULL; in main()
H A Dembossupdate.c51 AjPFilebuff updatefile = NULL; in main()

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