Searched refs:BRLENS_MIN (Results 1 – 8 of 8) sorted by relevance
528 minV = BRLENS_MIN; in Move_BrLen()534 minV = BRLENS_MIN; in Move_BrLen()656 (q->length > BRLENS_MIN && p->length < BRLENS_MIN) || in Move_ClockRate_M()1797 minV = BRLENS_MIN; in Move_ExtFossilSPRClock()2295 minV = mp->brlensUni[0] > BRLENS_MIN ? mp->brlensUni[0] : BRLENS_MIN; in Move_ExtSPR()2719 minV = mp->brlensUni[0] > BRLENS_MIN ? mp->brlensUni[0] : BRLENS_MIN; in Move_ExtSPR1()3268 minV = BRLENS_MIN; in Move_ExtSPRClock()4188 minV = BRLENS_MIN; in Move_ExtSSClock()9499 minV = BRLENS_MIN; in Move_ParsFossilSPRClock()11898 minV = BRLENS_MIN; in Move_ParsSPRClock()[all …]
1451 else if (length < BRLENS_MIN) in TreeTiProbs_Beagle()1452 length = BRLENS_MIN; in TreeTiProbs_Beagle()2089 else if (length < BRLENS_MIN) in TreeTiProbs_BeagleMultiPartition()2090 length = BRLENS_MIN; in TreeTiProbs_BeagleMultiPartition()
8091 lnPrior += log(1.0) - log(mp->brlensUni[1] - BRLENS_MIN); in LogPrior()8698 while (t < t_f[i] + BRLENS_MIN/5) in Slice_i()8872 if (fabs(mp->birthRateShiftTime[i] - shiftTimes[j]) <= BRLENS_MIN/2) in GetTotalRateShifts()8874 if (fabs(mp->birthRateShiftTime[i] - shiftTimes[j]) > BRLENS_MIN/2) in GetTotalRateShifts()8881 if (fabs(mp->deathRateShiftTime[i] - shiftTimes[j]) <= BRLENS_MIN/2) in GetTotalRateShifts()8883 if (fabs(mp->deathRateShiftTime[i] - shiftTimes[j]) > BRLENS_MIN/2) in GetTotalRateShifts()8976 if (mp->birthRateShiftNum > 0 && mp->birthRateShiftTime[i1] > t_f[i] +BRLENS_MIN/2) in LnFossilizedBDPriorRandom()8978 if (mp->deathRateShiftNum > 0 && mp->deathRateShiftTime[i2] > t_f[i] +BRLENS_MIN/2) in LnFossilizedBDPriorRandom()8980 if (mp->fossilSamplingNum > 0 && mp->fossilSamplingTime[i3] > t_f[i] +BRLENS_MIN/2) in LnFossilizedBDPriorRandom()9073 …->length > 0.0 && (p->nodeDepth +BRLENS_MIN/10 < t_f[j]*clockRate) && (t_f[j]*clockRate < p->anc->… in LnFossilizedBDPriorRandom()[all …]
788 defaultModel.brlensUni[0] = BRLENS_MIN; in InitializeMrBayes()
324 #define BRLENS_MIN 0.00000001f // 1E-8f macro
1557 calibrationPtr->min = BRLENS_MIN; in DoCalibrateParm()1564 calibrationPtr->min = BRLENS_MIN + priorParams[0]; in DoCalibrateParm()1571 calibrationPtr->min = BRLENS_MIN; in DoCalibrateParm()1578 calibrationPtr->min = BRLENS_MIN + priorParams[0]; in DoCalibrateParm()
3711 tmp = BRLENS_MIN/(p->anc->age - p->age); in findAllowedClockrate()4273 if (p->length < BRLENS_MIN) in InitCalibratedBrlens()4763 if (firstLength < BRLENS_MIN) in IsClockSatisfied()
10140 else if (length < BRLENS_MIN) in TiProbs_Std()10141 length = BRLENS_MIN; in TiProbs_Std()