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Searched refs:DMLi (Results 1 – 5 of 5) sorted by relevance

/dports/biology/viennarna/ViennaRNA-2.4.18/src/ViennaRNA/
H A Dsnofold.c134 PRIVATE int *DMLi = NULL; /* DMLi[j] holds MIN(fML[i,k]+fML[k+1,j]) */ variable
217 DMLi = (int *)vrna_alloc(sizeof(int) * (size + 1)); in get_arrays()
239 DMLi = (int *)vrna_alloc(sizeof(int) * (size + 1)); in aliget_arrays()
284 free(DMLi); in snofree_arrays()
315 free(DMLi); in alisnofree_arrays()
673 DMLi1 = DMLi; in alifill_arrays()
674 DMLi = FF; in alifill_arrays()
679 cc[j] = Fmi[j] = DMLi[j] = INF; in alifill_arrays()
978 DMLi1 = DMLi; in fill_arrays()
979 DMLi = FF; in fill_arrays()
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H A Dcofold.c200 int *DMLi; /* DMLi[j] holds MIN(fML[i,k]+fML[k+1,j]) */ in fill_arrays() local
238 DMLi = (int *)vrna_alloc(sizeof(int) * (length + 1)); in fill_arrays()
247 Fmi[j] = DMLi[j] = DMLi1[j] = DMLi2[j] = INF; in fill_arrays()
320 my_fML[ij] = vrna_E_ml_stems_fast(vc, i, j, Fmi, DMLi); in fill_arrays()
337 DMLi1 = DMLi; in fill_arrays()
338 DMLi = FF; in fill_arrays()
343 cc[j] = Fmi[j] = DMLi[j] = INF; in fill_arrays()
379 free(DMLi); in fill_arrays()
H A Dmfe_window.c66 int *DMLi; /* DMLi[j] holds MIN(fML[i,k]+fML[k+1,j]) */ member
691 fML[i][j - i] = vrna_E_ml_stems_fast(vc, i, j, helper_arrays->Fmi, helper_arrays->DMLi); in fill_arrays()
1966 …aux->DMLi = (int *)vrna_alloc(sizeof(int) * (maxdist + 5)); /* DMLi[j] holds MIN(fML[i,k]+fML… in get_aux_arrays()
1972 aux->Fmi[j] = aux->DMLi[j] = aux->DMLi1[j] = aux->DMLi2[j] = INF; in get_aux_arrays()
1987 aux->DMLi1 = aux->DMLi; in rotate_aux_arrays()
1988 aux->DMLi = FF; in rotate_aux_arrays()
1993 aux->cc[j] = aux->Fmi[j] = aux->DMLi[j] = INF; in rotate_aux_arrays()
2003 free(aux->DMLi); in free_aux_arrays()
H A Dmfe.c52 int *DMLi; /* DMLi[j] holds MIN(fML[i,k]+fML[k+1,j]) */ member
331 fML[ij] = vrna_E_ml_stems_fast(fc, i, j, helper_arrays->Fmi, helper_arrays->DMLi); in fill_arrays()
1811 …aux->DMLi = (int *)vrna_alloc(sizeof(int) * (length + 1)); /* DMLi[j] holds MIN(fML[i,k]+fML[k… in get_aux_arrays()
1817 aux->Fmi[j] = aux->DMLi[j] = aux->DMLi1[j] = aux->DMLi2[j] = INF; in get_aux_arrays()
1832 aux->DMLi1 = aux->DMLi; in rotate_aux_arrays()
1833 aux->DMLi = FF; in rotate_aux_arrays()
1838 aux->cc[j] = aux->Fmi[j] = aux->DMLi[j] = INF; in rotate_aux_arrays()
1848 free(aux->DMLi); in free_aux_arrays()
/dports/biology/viennarna/ViennaRNA-2.4.18/src/ViennaRNA/loops/
H A Dmultibranch.c1439 DMLi[j] = MIN2(DMLi[j], decomp); in E_ml_stems_fast()
1440 DMLi[j] = MIN2(DMLi[j], DMLi[j - 1] + P->MLbase); in E_ml_stems_fast()
1441 DMLi[j] = MIN2(DMLi[j], DMLi1[j] + P->MLbase); in E_ml_stems_fast()
1442 new_fML = MIN2(new_fML, DMLi[j]); in E_ml_stems_fast()