Searched refs:DMLi (Results 1 – 5 of 5) sorted by relevance
/dports/biology/viennarna/ViennaRNA-2.4.18/src/ViennaRNA/ |
H A D | snofold.c | 134 PRIVATE int *DMLi = NULL; /* DMLi[j] holds MIN(fML[i,k]+fML[k+1,j]) */ variable 217 DMLi = (int *)vrna_alloc(sizeof(int) * (size + 1)); in get_arrays() 239 DMLi = (int *)vrna_alloc(sizeof(int) * (size + 1)); in aliget_arrays() 284 free(DMLi); in snofree_arrays() 315 free(DMLi); in alisnofree_arrays() 673 DMLi1 = DMLi; in alifill_arrays() 674 DMLi = FF; in alifill_arrays() 679 cc[j] = Fmi[j] = DMLi[j] = INF; in alifill_arrays() 978 DMLi1 = DMLi; in fill_arrays() 979 DMLi = FF; in fill_arrays() [all …]
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H A D | cofold.c | 200 int *DMLi; /* DMLi[j] holds MIN(fML[i,k]+fML[k+1,j]) */ in fill_arrays() local 238 DMLi = (int *)vrna_alloc(sizeof(int) * (length + 1)); in fill_arrays() 247 Fmi[j] = DMLi[j] = DMLi1[j] = DMLi2[j] = INF; in fill_arrays() 320 my_fML[ij] = vrna_E_ml_stems_fast(vc, i, j, Fmi, DMLi); in fill_arrays() 337 DMLi1 = DMLi; in fill_arrays() 338 DMLi = FF; in fill_arrays() 343 cc[j] = Fmi[j] = DMLi[j] = INF; in fill_arrays() 379 free(DMLi); in fill_arrays()
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H A D | mfe_window.c | 66 int *DMLi; /* DMLi[j] holds MIN(fML[i,k]+fML[k+1,j]) */ member 691 fML[i][j - i] = vrna_E_ml_stems_fast(vc, i, j, helper_arrays->Fmi, helper_arrays->DMLi); in fill_arrays() 1966 …aux->DMLi = (int *)vrna_alloc(sizeof(int) * (maxdist + 5)); /* DMLi[j] holds MIN(fML[i,k]+fML… in get_aux_arrays() 1972 aux->Fmi[j] = aux->DMLi[j] = aux->DMLi1[j] = aux->DMLi2[j] = INF; in get_aux_arrays() 1987 aux->DMLi1 = aux->DMLi; in rotate_aux_arrays() 1988 aux->DMLi = FF; in rotate_aux_arrays() 1993 aux->cc[j] = aux->Fmi[j] = aux->DMLi[j] = INF; in rotate_aux_arrays() 2003 free(aux->DMLi); in free_aux_arrays()
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H A D | mfe.c | 52 int *DMLi; /* DMLi[j] holds MIN(fML[i,k]+fML[k+1,j]) */ member 331 fML[ij] = vrna_E_ml_stems_fast(fc, i, j, helper_arrays->Fmi, helper_arrays->DMLi); in fill_arrays() 1811 …aux->DMLi = (int *)vrna_alloc(sizeof(int) * (length + 1)); /* DMLi[j] holds MIN(fML[i,k]+fML[k… in get_aux_arrays() 1817 aux->Fmi[j] = aux->DMLi[j] = aux->DMLi1[j] = aux->DMLi2[j] = INF; in get_aux_arrays() 1832 aux->DMLi1 = aux->DMLi; in rotate_aux_arrays() 1833 aux->DMLi = FF; in rotate_aux_arrays() 1838 aux->cc[j] = aux->Fmi[j] = aux->DMLi[j] = INF; in rotate_aux_arrays() 1848 free(aux->DMLi); in free_aux_arrays()
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/dports/biology/viennarna/ViennaRNA-2.4.18/src/ViennaRNA/loops/ |
H A D | multibranch.c | 1439 DMLi[j] = MIN2(DMLi[j], decomp); in E_ml_stems_fast() 1440 DMLi[j] = MIN2(DMLi[j], DMLi[j - 1] + P->MLbase); in E_ml_stems_fast() 1441 DMLi[j] = MIN2(DMLi[j], DMLi1[j] + P->MLbase); in E_ml_stems_fast() 1442 new_fML = MIN2(new_fML, DMLi[j]); in E_ml_stems_fast()
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