Searched refs:DMLi1 (Results 1 – 5 of 5) sorted by relevance
/dports/biology/viennarna/ViennaRNA-2.4.18/src/ViennaRNA/ |
H A D | snofold.c | 135 PRIVATE int *DMLi1 = NULL; /* MIN(fML[i+1,k]+fML[k+1,j]) */ variable 218 DMLi1 = (int *)vrna_alloc(sizeof(int) * (size + 1)); in get_arrays() 240 DMLi1 = (int *)vrna_alloc(sizeof(int) * (size + 1)); in aliget_arrays() 285 free(DMLi1); in snofree_arrays() 316 free(DMLi1); in alisnofree_arrays() 672 DMLi2 = DMLi1; in alifill_arrays() 673 DMLi1 = DMLi; in alifill_arrays() 977 DMLi2 = DMLi1; in fill_arrays() 978 DMLi1 = DMLi; in fill_arrays()
|
H A D | mfe_window.c | 67 int *DMLi1; /* MIN(fML[i+1,k]+fML[k+1,j]) */ member 1895 *DMLi1, *DMLi2, *cc, *cc1; in decompose_pair() local 1900 DMLi1 = aux->DMLi1; in decompose_pair() 1915 energy = vrna_E_mb_loop_fast(fc, i, j, DMLi1, DMLi2); in decompose_pair() 1967 …aux->DMLi1 = (int *)vrna_alloc(sizeof(int) * (maxdist + 5)); /* MIN(fML[i+1,k]+f… in get_aux_arrays() 1972 aux->Fmi[j] = aux->DMLi[j] = aux->DMLi1[j] = aux->DMLi2[j] = INF; in get_aux_arrays() 1986 aux->DMLi2 = aux->DMLi1; in rotate_aux_arrays() 1987 aux->DMLi1 = aux->DMLi; in rotate_aux_arrays() 2004 free(aux->DMLi1); in free_aux_arrays()
|
H A D | cofold.c | 201 int *DMLi1; /* MIN(fML[i+1,k]+fML[k+1,j]) */ in fill_arrays() local 239 DMLi1 = (int *)vrna_alloc(sizeof(int) * (length + 1)); in fill_arrays() 247 Fmi[j] = DMLi[j] = DMLi1[j] = DMLi2[j] = INF; in fill_arrays() 281 energy = vrna_E_mb_loop_fast(vc, i, j, DMLi1, DMLi2); in fill_arrays() 336 DMLi2 = DMLi1; in fill_arrays() 337 DMLi1 = DMLi; in fill_arrays() 380 free(DMLi1); in fill_arrays()
|
H A D | mfe.c | 53 int *DMLi1; /* MIN(fML[i+1,k]+fML[k+1,j]) */ member 1738 *DMLi1, *DMLi2, *cc, *cc1; in decompose_pair() local 1745 DMLi1 = aux->DMLi1; in decompose_pair() 1760 energy = vrna_E_mb_loop_fast(fc, i, j, DMLi1, DMLi2); in decompose_pair() 1812 …aux->DMLi1 = (int *)vrna_alloc(sizeof(int) * (length + 1)); /* MIN(fML[i+1,k]+fML… in get_aux_arrays() 1817 aux->Fmi[j] = aux->DMLi[j] = aux->DMLi1[j] = aux->DMLi2[j] = INF; in get_aux_arrays() 1831 aux->DMLi2 = aux->DMLi1; in rotate_aux_arrays() 1832 aux->DMLi1 = aux->DMLi; in rotate_aux_arrays() 1849 free(aux->DMLi1); in free_aux_arrays()
|
/dports/biology/viennarna/ViennaRNA-2.4.18/src/ViennaRNA/loops/ |
H A D | multibranch.c | 1441 DMLi[j] = MIN2(DMLi[j], DMLi1[j] + P->MLbase); in E_ml_stems_fast()
|