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Searched refs:DMLi1 (Results 1 – 5 of 5) sorted by relevance

/dports/biology/viennarna/ViennaRNA-2.4.18/src/ViennaRNA/
H A Dsnofold.c135 PRIVATE int *DMLi1 = NULL; /* MIN(fML[i+1,k]+fML[k+1,j]) */ variable
218 DMLi1 = (int *)vrna_alloc(sizeof(int) * (size + 1)); in get_arrays()
240 DMLi1 = (int *)vrna_alloc(sizeof(int) * (size + 1)); in aliget_arrays()
285 free(DMLi1); in snofree_arrays()
316 free(DMLi1); in alisnofree_arrays()
672 DMLi2 = DMLi1; in alifill_arrays()
673 DMLi1 = DMLi; in alifill_arrays()
977 DMLi2 = DMLi1; in fill_arrays()
978 DMLi1 = DMLi; in fill_arrays()
H A Dmfe_window.c67 int *DMLi1; /* MIN(fML[i+1,k]+fML[k+1,j]) */ member
1895 *DMLi1, *DMLi2, *cc, *cc1; in decompose_pair() local
1900 DMLi1 = aux->DMLi1; in decompose_pair()
1915 energy = vrna_E_mb_loop_fast(fc, i, j, DMLi1, DMLi2); in decompose_pair()
1967 …aux->DMLi1 = (int *)vrna_alloc(sizeof(int) * (maxdist + 5)); /* MIN(fML[i+1,k]+f… in get_aux_arrays()
1972 aux->Fmi[j] = aux->DMLi[j] = aux->DMLi1[j] = aux->DMLi2[j] = INF; in get_aux_arrays()
1986 aux->DMLi2 = aux->DMLi1; in rotate_aux_arrays()
1987 aux->DMLi1 = aux->DMLi; in rotate_aux_arrays()
2004 free(aux->DMLi1); in free_aux_arrays()
H A Dcofold.c201 int *DMLi1; /* MIN(fML[i+1,k]+fML[k+1,j]) */ in fill_arrays() local
239 DMLi1 = (int *)vrna_alloc(sizeof(int) * (length + 1)); in fill_arrays()
247 Fmi[j] = DMLi[j] = DMLi1[j] = DMLi2[j] = INF; in fill_arrays()
281 energy = vrna_E_mb_loop_fast(vc, i, j, DMLi1, DMLi2); in fill_arrays()
336 DMLi2 = DMLi1; in fill_arrays()
337 DMLi1 = DMLi; in fill_arrays()
380 free(DMLi1); in fill_arrays()
H A Dmfe.c53 int *DMLi1; /* MIN(fML[i+1,k]+fML[k+1,j]) */ member
1738 *DMLi1, *DMLi2, *cc, *cc1; in decompose_pair() local
1745 DMLi1 = aux->DMLi1; in decompose_pair()
1760 energy = vrna_E_mb_loop_fast(fc, i, j, DMLi1, DMLi2); in decompose_pair()
1812 …aux->DMLi1 = (int *)vrna_alloc(sizeof(int) * (length + 1)); /* MIN(fML[i+1,k]+fML… in get_aux_arrays()
1817 aux->Fmi[j] = aux->DMLi[j] = aux->DMLi1[j] = aux->DMLi2[j] = INF; in get_aux_arrays()
1831 aux->DMLi2 = aux->DMLi1; in rotate_aux_arrays()
1832 aux->DMLi1 = aux->DMLi; in rotate_aux_arrays()
1849 free(aux->DMLi1); in free_aux_arrays()
/dports/biology/viennarna/ViennaRNA-2.4.18/src/ViennaRNA/loops/
H A Dmultibranch.c1441 DMLi[j] = MIN2(DMLi[j], DMLi1[j] + P->MLbase); in E_ml_stems_fast()