Searched refs:DistanceCommand (Results 1 – 6 of 6) sorted by relevance
| /dports/biology/mothur/mothur-1.46.1/source/commands/ |
| H A D | distancecommand.h | 66 class DistanceCommand : public Command {
69 DistanceCommand(string);
70 …DistanceCommand(StorageDatabase*&, string, double, string, int); //used by mothur's splitMatrix cl…
71 ~DistanceCommand() {} in ~DistanceCommand()
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| H A D | distancecommand.cpp | 13 vector<string> DistanceCommand::setParameters(){ in setParameters()
45 string DistanceCommand::getHelpString(){ in getHelpString()
69 string DistanceCommand::getOutputPattern(string type) { in getOutputPattern()
85 DistanceCommand::DistanceCommand(string option) : Command() { in DistanceCommand() function in DistanceCommand
162 DistanceCommand::DistanceCommand(StorageDatabase*& storageDB, string outputFileRoot, double cut, st… in DistanceCommand() function in DistanceCommand
218 int DistanceCommand::execute(){ in execute()
637 void DistanceCommand::createProcesses(string filename) { in createProcesses()
759 bool DistanceCommand::sanityCheck() { in sanityCheck()
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| H A D | clusterfitcommand.cpp | 1182 Command* distCommand = new DistanceCommand(options); in calcDists()
1207 DistanceCommand* distCommand = new DistanceCommand(options); in calcDists()
1256 Command* distCommand = new DistanceCommand(options); in calcDists()
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| H A D | helpcommand.cpp | 275 … else if(commandName == "dist.seqs") { command = new DistanceCommand(optionString); } in execute()
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| /dports/biology/mothur/mothur-1.46.1/source/ |
| H A D | commandfactory.cpp | 447 else if(commandName == "dist.seqs") { command = new DistanceCommand(optionString); } in getCommand()
623 else if(commandName == "dist.seqs") { pipecommand = new DistanceCommand(optionString); } in getCommand()
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| /dports/biology/mothur/mothur-1.46.1/source/read/ |
| H A D | splitmatrix.cpp | 151 … command = new DistanceCommand(thisDB, outputFileRoot, distCutoff, outputformat, processors); in createDistanceFilesFromTax()
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