| /dports/biology/infernal/infernal-1.1.3/easel/ |
| H A D | esl_keyhash.h | 46 } ESL_KEYHASH; typedef
48 extern ESL_KEYHASH *esl_keyhash_Create(void);
49 extern ESL_KEYHASH *esl_keyhash_CreateCustom(uint32_t hashsize, int kalloc, int salloc);
50 extern ESL_KEYHASH *esl_keyhash_Clone(const ESL_KEYHASH *kh);
51 extern char * esl_keyhash_Get(const ESL_KEYHASH *kh, int idx);
52 extern int esl_keyhash_GetNumber(const ESL_KEYHASH *kh);
53 extern size_t esl_keyhash_Sizeof(const ESL_KEYHASH *kh);
54 extern int esl_keyhash_Reuse(ESL_KEYHASH *kh);
55 extern void esl_keyhash_Destroy(ESL_KEYHASH *kh);
56 extern void esl_keyhash_Dump(FILE *fp, const ESL_KEYHASH *kh);
[all …]
|
| H A D | esl_keyhash.c | 45 ESL_KEYHASH *
71 ESL_KEYHASH *
86 ESL_KEYHASH *
89 ESL_KEYHASH *nw; in esl_keyhash_Clone()
150 n += sizeof(ESL_KEYHASH); in esl_keyhash_Sizeof()
167 esl_keyhash_Reuse(ESL_KEYHASH *kh) in esl_keyhash_Reuse()
187 esl_keyhash_Destroy(ESL_KEYHASH *kh) in esl_keyhash_Destroy()
383 ESL_KEYHASH *
386 ESL_KEYHASH *kh = NULL; in keyhash_create()
390 ESL_ALLOC(kh, sizeof(ESL_KEYHASH)); in keyhash_create()
[all …]
|
| H A D | esl_msa.h | 118 ESL_KEYHASH *index; /* name ->seqidx hash table */
119 ESL_KEYHASH *gs_idx; /* hash of #=GS tag types */
120 ESL_KEYHASH *gc_idx; /* hash of #=GC tag types */
121 ESL_KEYHASH *gr_idx; /* hash of #=GR tag types */
|
| H A D | esl_msafile2.h | 64 … int do_gs, int do_gc, int do_gr, int do_aseq, ESL_KEYHASH *seqs2regurg, ESL_KEYHASH *seqs2skip,
|
| H A D | esl_keyhash.tex | 44 ESL_KEYHASH *kh = esl_keyhash_Create();
|
| H A D | esl_msafile2.c | 796 int do_gs, int do_gc, int do_gr, int do_aseq, ESL_KEYHASH *seqs2regurg, in esl_msafile2_RegurgitatePfam()
797 ESL_KEYHASH *seqs2skip, int *useme, int *add2me, int exp_alen, char gapchar2add, in esl_msafile2_RegurgitatePfam()
|
| /dports/biology/hmmer/hmmer-3.3/easel/ |
| H A D | esl_keyhash.h | 46 } ESL_KEYHASH; typedef
48 extern ESL_KEYHASH *esl_keyhash_Create(void);
49 extern ESL_KEYHASH *esl_keyhash_CreateCustom(uint32_t hashsize, int kalloc, int salloc);
50 extern ESL_KEYHASH *esl_keyhash_Clone(const ESL_KEYHASH *kh);
51 extern char * esl_keyhash_Get(const ESL_KEYHASH *kh, int idx);
52 extern int esl_keyhash_GetNumber(const ESL_KEYHASH *kh);
53 extern size_t esl_keyhash_Sizeof(const ESL_KEYHASH *kh);
54 extern int esl_keyhash_Reuse(ESL_KEYHASH *kh);
55 extern void esl_keyhash_Destroy(ESL_KEYHASH *kh);
56 extern void esl_keyhash_Dump(FILE *fp, const ESL_KEYHASH *kh);
[all …]
|
| H A D | esl_keyhash.c | 45 ESL_KEYHASH *
71 ESL_KEYHASH *
86 ESL_KEYHASH *
89 ESL_KEYHASH *nw; in esl_keyhash_Clone()
150 n += sizeof(ESL_KEYHASH); in esl_keyhash_Sizeof()
167 esl_keyhash_Reuse(ESL_KEYHASH *kh) in esl_keyhash_Reuse()
187 esl_keyhash_Destroy(ESL_KEYHASH *kh) in esl_keyhash_Destroy()
383 ESL_KEYHASH *
386 ESL_KEYHASH *kh = NULL; in keyhash_create()
390 ESL_ALLOC(kh, sizeof(ESL_KEYHASH)); in keyhash_create()
[all …]
|
| H A D | esl_msa.h | 118 ESL_KEYHASH *index; /* name ->seqidx hash table */
119 ESL_KEYHASH *gs_idx; /* hash of #=GS tag types */
120 ESL_KEYHASH *gc_idx; /* hash of #=GC tag types */
121 ESL_KEYHASH *gr_idx; /* hash of #=GR tag types */
|
| H A D | esl_msafile2.h | 64 … int do_gs, int do_gc, int do_gr, int do_aseq, ESL_KEYHASH *seqs2regurg, ESL_KEYHASH *seqs2skip,
|
| H A D | esl_keyhash.tex | 44 ESL_KEYHASH *kh = esl_keyhash_Create();
|
| H A D | esl_msafile2.c | 796 int do_gs, int do_gc, int do_gr, int do_aseq, ESL_KEYHASH *seqs2regurg, in esl_msafile2_RegurgitatePfam()
797 ESL_KEYHASH *seqs2skip, int *useme, int *add2me, int exp_alen, char gapchar2add, in esl_msafile2_RegurgitatePfam()
|
| /dports/biology/infernal/infernal-1.1.3/hmmer/profmark/ |
| H A D | rocplot.c | 104 static int parse_tblfile(char *tblfile, ESL_KEYHASH *kh);
105 …ic int parse_results(char *resfile, int **pni, ESL_KEYHASH *modelkh, ESL_KEYHASH *poskh, ESL_KE…
142 ESL_KEYHASH *qkh = esl_keyhash_Create(); in main()
143 ESL_KEYHASH *poskh = esl_keyhash_Create(); in main()
144 ESL_KEYHASH *negkh = esl_keyhash_Create(); in main()
268 parse_tblfile(char *tblfile, ESL_KEYHASH *kh) in parse_tblfile()
340 parse_results(char *resfile, int **pni, ESL_KEYHASH *qkh, ESL_KEYHASH *poskh, ESL_KEYHASH *negkh, s… in parse_results()
|
| /dports/biology/hmmer/hmmer-3.3/profmark/ |
| H A D | rocplot.c | 104 static int parse_tblfile(char *tblfile, ESL_KEYHASH *kh);
105 …ic int parse_results(char *resfile, int **pni, ESL_KEYHASH *modelkh, ESL_KEYHASH *poskh, ESL_KE…
142 ESL_KEYHASH *qkh = esl_keyhash_Create(); in main()
143 ESL_KEYHASH *poskh = esl_keyhash_Create(); in main()
144 ESL_KEYHASH *negkh = esl_keyhash_Create(); in main()
268 parse_tblfile(char *tblfile, ESL_KEYHASH *kh) in parse_tblfile()
340 parse_results(char *resfile, int **pni, ESL_KEYHASH *qkh, ESL_KEYHASH *poskh, ESL_KEYHASH *negkh, s… in parse_results()
|
| /dports/biology/infernal/infernal-1.1.3/rmark/ |
| H A D | rmark-rocplot.c | 129 static int parse_tblfile(char *tblfile, ESL_KEYHASH *kh);
130 static int parse_results_rmark(char *resfile, int **pni, ESL_KEYHASH *modelkh, ESL_KEYHASH *posk…
170 ESL_KEYHASH *qkh = esl_keyhash_Create(); in main()
171 ESL_KEYHASH *poskh = esl_keyhash_Create(); in main()
322 parse_tblfile(char *tblfile, ESL_KEYHASH *kh) in parse_tblfile()
391 parse_results_rmark(char *resfile, int **pni, ESL_KEYHASH *qkh, ESL_KEYHASH *poskh, struct result_s… in parse_results_rmark()
|
| /dports/biology/infernal/infernal-1.1.3/src/ |
| H A D | cmscan.c | 51 …ESL_KEYHASH *glocal_kh; /* non-NULL only if --glist, these models will be run in glocal mode…
295 …info_file(char *filename, char *errbuf, CM_FILE *cmfp, ESL_KEYHASH **ret_clan_name_kh, ESL_KEYHASH…
428 ESL_KEYHASH *clan_name_kh = NULL; /* these are clan names */ in serial_master()
1274 ESL_KEYHASH *clan_name_kh = NULL; /* these are clan names */ in mpi_master()
1669 ESL_KEYHASH *clan_name_kh = NULL; /* these are clan names */ in mpi_worker()
2491 read_glocal_list_file(char *filename, char *errbuf, CM_FILE *cmfp, ESL_KEYHASH **ret_glocal_kh) in read_glocal_list_file()
2497 ESL_KEYHASH *glocal_kh = NULL; in read_glocal_list_file()
2569 …info_file(char *filename, char *errbuf, CM_FILE *cmfp, ESL_KEYHASH **ret_clan_name_kh, ESL_KEYHASH… in read_clan_info_file()
2575 ESL_KEYHASH *clan_name_kh = NULL; /* these are clan names */ in read_clan_info_file()
2671 determine_clan_index(char *modelname, ESL_KEYHASH *clan_fam_kh, int *clan_mapA) in determine_clan_index()
[all …]
|
| H A D | cmfetch.c | 244 ESL_KEYHASH *keys = esl_keyhash_Create(); in multifetch()
|
| /dports/biology/infernal/infernal-1.1.3/hmmer/src/ |
| H A D | hmmfetch.c | 235 ESL_KEYHASH *keys = esl_keyhash_Create(); in multifetch()
|
| H A D | jackhmmer.c | 442 ESL_KEYHASH *kh = NULL; /* hash of previous top hits' ranks */ in serial_master()
997 ESL_KEYHASH *kh = NULL; /* hash of previous top hits' ranks */ in mpi_master()
1379 ESL_KEYHASH *kh = NULL; /* hash of previous top hits' ranks */ in mpi_worker()
|
| /dports/biology/hmmer/hmmer-3.3/src/ |
| H A D | hmmfetch.c | 235 ESL_KEYHASH *keys = esl_keyhash_Create(); in multifetch()
|
| H A D | jackhmmer.c | 442 ESL_KEYHASH *kh = NULL; /* hash of previous top hits' ranks */ in serial_master()
997 ESL_KEYHASH *kh = NULL; /* hash of previous top hits' ranks */ in mpi_master()
1379 ESL_KEYHASH *kh = NULL; /* hash of previous top hits' ranks */ in mpi_worker()
|
| /dports/biology/infernal/infernal-1.1.3/easel/miniapps/ |
| H A D | esl-afetch.c | 241 ESL_KEYHASH *keys = esl_keyhash_Create(); in multifetch()
|
| H A D | esl-sfetch.c | 294 ESL_KEYHASH *keys = esl_keyhash_Create(); in multifetch()
|
| /dports/biology/hmmer/hmmer-3.3/easel/miniapps/ |
| H A D | esl-afetch.c | 241 ESL_KEYHASH *keys = esl_keyhash_Create(); in multifetch()
|
| H A D | esl-sfetch.c | 294 ESL_KEYHASH *keys = esl_keyhash_Create(); in multifetch()
|