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Searched refs:EmbPMatMatch (Results 1 – 15 of 15) sorted by relevance

/dports/biology/emboss/EMBOSS-6.6.0/nucleus/
H A Dembmat.h171 #define EmbPMatMatch EmbOMatMatch* macro
186 void embMatMatchDel (EmbPMatMatch *s);
H A Dembmat.c70 EmbPMatMatch mat; in matPushHitInt()
109 void embMatMatchDel(EmbPMatMatch *s) in embMatMatchDel()
312 EmbPMatMatch mm; in embMatProtScanInt()
H A Dembpat.c1184 EmbPMatMatch hit; in patRestrictPushHit()
1484 EmbPMatMatch match = NULL; in patRestrictMethylMod()
1615 EmbPMatMatch m = NULL; in embPatRestrictScan()
1616 EmbPMatMatch z = NULL; in embPatRestrictScan()
2114 EmbPMatMatch hit; in embPatPushHit()
4187 EmbPMatMatch m = NULL; in embPatRestrictPreferred()
4232 EmbPMatMatch m = NULL; in embPatRestrictRestrict()
4522 if(!(*(EmbPMatMatch const *)a)->forward) in embPatRestrictStartCompare()
4523 astart = (*(EmbPMatMatch const *)a)->end; in embPatRestrictStartCompare()
4524 if(!(*(EmbPMatMatch const *)b)->forward) in embPatRestrictStartCompare()
[all …]
H A Dembpatlist.c536 EmbPMatMatch m = NULL; in embPatternSeqSearch()
682 EmbPMatMatch m = NULL; in embPatternSeqSearchAll()
H A Dembshow.c2184 EmbPMatMatch m = NULL; /* restriction enz match structure */ in showFillREupright()
2430 EmbPMatMatch m = NULL; /* restriction enzyme match struct */ in showFillREflat()
/dports/biology/emboss/EMBOSS-6.6.0/emboss/
H A Drecoder.c114 static AjPList recoder_checkTrans(const AjPStr seq,const EmbPMatMatch match,
118 static AjBool recoder_checkPat(const EmbPMatMatch match,
283 EmbPMatMatch match; /* ..AjMatMatch structures*/ in recoder_rematch()
489 static AjBool recoder_checkPat(const EmbPMatMatch match, in recoder_checkPat()
542 static AjPList recoder_checkTrans(const AjPStr dna, const EmbPMatMatch match, in recoder_checkTrans()
H A Drestrict.c273 EmbPMatMatch m = NULL; in restrict_reportHits()
280 EmbPMatMatch *fm = NULL; in restrict_reportHits()
956 return strcmp((*(EmbPMatMatch const *)a)->cod->Ptr, in restrict_enzcompare()
957 (*(EmbPMatMatch const *)b)->cod->Ptr); in restrict_enzcompare()
H A Dprimersearch.c379 EmbPMatMatch fm = ajListIterGet(lIter); in primersearch_clean_hitlist()
739 EmbPMatMatch fm = NULL; in primersearch_store_hits()
740 EmbPMatMatch rm = NULL; in primersearch_store_hits()
H A Dsilent.c108 static PSilent silent_checktrans(const AjPStr seq,const EmbPMatMatch match,
295 EmbPMatMatch match; /*..AjMatMatch structures*/ in silent_mismatch()
491 static PSilent silent_checktrans(const AjPStr seq,const EmbPMatMatch match, in silent_checktrans()
H A Dremap.c118 EmbPMatMatch mm = NULL; in main()
453 EmbPMatMatch m = NULL; /* restriction enzyme match structure */ in remap_RemoveMinMax()
1253 EmbPMatMatch m = NULL; in remap_RestrictPreferred()
1265 while((m = (EmbPMatMatch)ajListIterGet(iter))) in remap_RestrictPreferred()
H A Dvectorstrip.c402 EmbPMatMatch fm = ajListIterGet(iter); in vectorstrip_free_list()
548 EmbPMatMatch m = NULL; in vectorstrip_process_hits()
981 EmbPMatMatch m; in vectorstrip_print_hits()
H A Dmarscan.c149 EmbPMatMatch aptr = NULL; in main()
500 EmbPMatMatch m; in marscan_getpos()
H A Dtfscan.c227 EmbPMatMatch m; in tfscan_print_hits()
H A Drestover.c246 EmbPMatMatch m = NULL; in restover_printHits()
H A Dpscan.c141 EmbPMatMatch mm; in pscan_print_hits()