Searched refs:EmbPMatMatch (Results 1 – 15 of 15) sorted by relevance
/dports/biology/emboss/EMBOSS-6.6.0/nucleus/ |
H A D | embmat.h | 171 #define EmbPMatMatch EmbOMatMatch* macro 186 void embMatMatchDel (EmbPMatMatch *s);
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H A D | embmat.c | 70 EmbPMatMatch mat; in matPushHitInt() 109 void embMatMatchDel(EmbPMatMatch *s) in embMatMatchDel() 312 EmbPMatMatch mm; in embMatProtScanInt()
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H A D | embpat.c | 1184 EmbPMatMatch hit; in patRestrictPushHit() 1484 EmbPMatMatch match = NULL; in patRestrictMethylMod() 1615 EmbPMatMatch m = NULL; in embPatRestrictScan() 1616 EmbPMatMatch z = NULL; in embPatRestrictScan() 2114 EmbPMatMatch hit; in embPatPushHit() 4187 EmbPMatMatch m = NULL; in embPatRestrictPreferred() 4232 EmbPMatMatch m = NULL; in embPatRestrictRestrict() 4522 if(!(*(EmbPMatMatch const *)a)->forward) in embPatRestrictStartCompare() 4523 astart = (*(EmbPMatMatch const *)a)->end; in embPatRestrictStartCompare() 4524 if(!(*(EmbPMatMatch const *)b)->forward) in embPatRestrictStartCompare() [all …]
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H A D | embpatlist.c | 536 EmbPMatMatch m = NULL; in embPatternSeqSearch() 682 EmbPMatMatch m = NULL; in embPatternSeqSearchAll()
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H A D | embshow.c | 2184 EmbPMatMatch m = NULL; /* restriction enz match structure */ in showFillREupright() 2430 EmbPMatMatch m = NULL; /* restriction enzyme match struct */ in showFillREflat()
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/dports/biology/emboss/EMBOSS-6.6.0/emboss/ |
H A D | recoder.c | 114 static AjPList recoder_checkTrans(const AjPStr seq,const EmbPMatMatch match, 118 static AjBool recoder_checkPat(const EmbPMatMatch match, 283 EmbPMatMatch match; /* ..AjMatMatch structures*/ in recoder_rematch() 489 static AjBool recoder_checkPat(const EmbPMatMatch match, in recoder_checkPat() 542 static AjPList recoder_checkTrans(const AjPStr dna, const EmbPMatMatch match, in recoder_checkTrans()
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H A D | restrict.c | 273 EmbPMatMatch m = NULL; in restrict_reportHits() 280 EmbPMatMatch *fm = NULL; in restrict_reportHits() 956 return strcmp((*(EmbPMatMatch const *)a)->cod->Ptr, in restrict_enzcompare() 957 (*(EmbPMatMatch const *)b)->cod->Ptr); in restrict_enzcompare()
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H A D | primersearch.c | 379 EmbPMatMatch fm = ajListIterGet(lIter); in primersearch_clean_hitlist() 739 EmbPMatMatch fm = NULL; in primersearch_store_hits() 740 EmbPMatMatch rm = NULL; in primersearch_store_hits()
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H A D | silent.c | 108 static PSilent silent_checktrans(const AjPStr seq,const EmbPMatMatch match, 295 EmbPMatMatch match; /*..AjMatMatch structures*/ in silent_mismatch() 491 static PSilent silent_checktrans(const AjPStr seq,const EmbPMatMatch match, in silent_checktrans()
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H A D | remap.c | 118 EmbPMatMatch mm = NULL; in main() 453 EmbPMatMatch m = NULL; /* restriction enzyme match structure */ in remap_RemoveMinMax() 1253 EmbPMatMatch m = NULL; in remap_RestrictPreferred() 1265 while((m = (EmbPMatMatch)ajListIterGet(iter))) in remap_RestrictPreferred()
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H A D | vectorstrip.c | 402 EmbPMatMatch fm = ajListIterGet(iter); in vectorstrip_free_list() 548 EmbPMatMatch m = NULL; in vectorstrip_process_hits() 981 EmbPMatMatch m; in vectorstrip_print_hits()
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H A D | marscan.c | 149 EmbPMatMatch aptr = NULL; in main() 500 EmbPMatMatch m; in marscan_getpos()
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H A D | tfscan.c | 227 EmbPMatMatch m; in tfscan_print_hits()
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H A D | restover.c | 246 EmbPMatMatch m = NULL; in restover_printHits()
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H A D | pscan.c | 141 EmbPMatMatch mm; in pscan_print_hits()
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