| /dports/biology/viennarna/ViennaRNA-2.4.18/interfaces/ |
| H A D | part_func.i | 188 float *FcAB, in my_co_pf_fold() argument
196 *FcAB = temp.FcAB; in my_co_pf_fold()
206 float *FcAB, in my_co_pf_fold() argument
216 *FcAB = temp.FcAB; in my_co_pf_fold()
244 my_get_concentrations(double FcAB, in my_get_concentrations() argument
263 temp=get_concentrations(FcAB,FcAA,FcBB,FEA,FEB,concis); in my_get_concentrations()
276 void my_get_concentrations(double FcAB, double FcAA, double FcBB, double FEA,double FEB, double A0,…
283 %apply float *OUTPUT { float *FA, float *FB, float *FcAB, float *FAB };
288 float *FcAB, in pf_dimer() argument
294 *FcAB = (float)temp.FcAB; in pf_dimer()
[all …]
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| /dports/biology/viennarna/ViennaRNA-2.4.18/src/bin/ |
| H A D | RNAcofold.c | 958 conc_result = vrna_pf_dimer_concentrations(AB.FcAB, in process_record()
959 AA.FcAB, in process_record()
960 BB.FcAB, in process_record()
975 AB.FcAB - AB.FA - AB.FB); in process_record()
982 AB.FcAB - AB.FA - AB.FB); in process_record()
995 AB.FcAB, opt->csv_output_delim, in process_record()
996 AA.FcAB, opt->csv_output_delim, in process_record()
997 BB.FcAB, opt->csv_output_delim, in process_record()
1005 AB.FcAB, in process_record()
1006 AA.FcAB, in process_record()
[all …]
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| /dports/biology/viennarna/ViennaRNA-2.4.18/src/ViennaRNA/ |
| H A D | concentrations.c | 56 vrna_pf_dimer_concentrations(double FcAB, in vrna_pf_dimer_concentrations() argument
80 KAB = exp((FEA + FEB - FcAB) / kT); in vrna_pf_dimer_concentrations()
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| H A D | concentrations.h | 75 vrna_dimer_conc_t *vrna_pf_dimer_concentrations(double FcAB,
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| H A D | part_func_co.c | 311 get_concentrations(double FcAB, in get_concentrations() argument
318 return vrna_pf_dimer_concentrations(FcAB, in get_concentrations()
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| H A D | part_func.h | 101 double FcAB; /**< @brief true hybrid states only */ member
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| H A D | part_func.c | 203 X.FA = X.FB = X.FAB = X.F0AB = X.FcAB = 0; in vrna_pf_dimer()
236 X.FcAB = 0; in vrna_pf_dimer()
289 X.FcAB = (QAB > 1e-17) ? -kT * (log(QAB) + n * log(params->pf_scale)) : 999; in vrna_pf_dimer()
300 X.FcAB = 0; in vrna_pf_dimer()
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| /dports/biology/viennarna/ViennaRNA-2.4.18/doc/latex/ |
| H A D | concentrations_8h_source.tex | 42 …f23e3356}{vrna\_pf\_dimer\_concentrations}}(\textcolor{keywordtype}{double} FcAB,}
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| H A D | part__func_8h_source.tex | 48 …e}{double} \mbox{\hyperlink{group__part__func__global_a7b01cea5721f61badebc29cf0a9c4266}{FcAB}}; }
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| /dports/biology/viennarna/ViennaRNA-2.4.18/man/ |
| H A D | RNAlib.texi | 370 @deftp {data type} cofoldF struct @{double F0AB, FAB, FcAB, FA, FB;@}
379 to include the initiation penalty, FcAB only includes real dimers. FA and
435 dimer-only free energies, i.e. the FcAB entries from the @code{cofoldF} struct.
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| /dports/biology/viennarna/ViennaRNA-2.4.18/interfaces/Python/ |
| H A D | RNA.py | 2431 def get_concentrations(FcAB, FcAA, FcBB, FEA, FEB, A0, BO): argument
2432 return _RNA.get_concentrations(FcAB, FcAA, FcBB, FEA, FEB, A0, BO)
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| H A D | RNA_wrap.cpp | 8401 float *FcAB, in my_co_pf_fold() argument
8409 *FcAB = temp.FcAB; in my_co_pf_fold()
8419 float *FcAB, in my_co_pf_fold() argument
8429 *FcAB = temp.FcAB; in my_co_pf_fold()
8439 my_get_concentrations(double FcAB, in my_get_concentrations() argument
8458 temp=get_concentrations(FcAB,FcAA,FcBB,FEA,FEB,concis); in my_get_concentrations()
12195 …na_fold_compound_t_pf_dimer(vrna_fold_compound_t *self,float *FA,float *FB,float *FcAB,float *FAB){ in vrna_fold_compound_t_pf_dimer() argument
12199 *FcAB = (float)temp.FcAB; in vrna_fold_compound_t_pf_dimer()
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| /dports/biology/viennarna/ViennaRNA-2.4.18/interfaces/Python3/ |
| H A D | RNA.py | 2431 def get_concentrations(FcAB: "double", FcAA: "double", FcBB: "double", FEA: "double", FEB: "double"…
2432 return _RNA.get_concentrations(FcAB, FcAA, FcBB, FEA, FEB, A0, BO)
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| H A D | RNA_wrap.cpp | 8545 float *FcAB, in my_co_pf_fold() argument
8553 *FcAB = temp.FcAB; in my_co_pf_fold()
8563 float *FcAB, in my_co_pf_fold() argument
8573 *FcAB = temp.FcAB; in my_co_pf_fold()
8583 my_get_concentrations(double FcAB, in my_get_concentrations() argument
8602 temp=get_concentrations(FcAB,FcAA,FcBB,FEA,FEB,concis); in my_get_concentrations()
12332 …na_fold_compound_t_pf_dimer(vrna_fold_compound_t *self,float *FA,float *FB,float *FcAB,float *FAB){ in vrna_fold_compound_t_pf_dimer() argument
12336 *FcAB = (float)temp.FcAB; in vrna_fold_compound_t_pf_dimer()
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| /dports/biology/viennarna/ViennaRNA-2.4.18/interfaces/Perl/ |
| H A D | RNA_wrap.cpp | 4232 float *FcAB, in my_co_pf_fold() argument
4240 *FcAB = temp.FcAB; in my_co_pf_fold()
4250 float *FcAB, in my_co_pf_fold() argument
4260 *FcAB = temp.FcAB; in my_co_pf_fold()
4270 my_get_concentrations(double FcAB, in my_get_concentrations() argument
4289 temp=get_concentrations(FcAB,FcAA,FcBB,FEA,FEB,concis); in my_get_concentrations()
7718 …na_fold_compound_t_pf_dimer(vrna_fold_compound_t *self,float *FA,float *FB,float *FcAB,float *FAB){ in vrna_fold_compound_t_pf_dimer() argument
7722 *FcAB = (float)temp.FcAB; in vrna_fold_compound_t_pf_dimer()
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