Searched refs:LENCOL (Results 1 – 7 of 7) sorted by relevance
/dports/biology/clustalw/clustalw-2.1/src/multipleAlign/ |
H A D | ProfileBase.cpp | 39 profile.resize(prfLength + 2, vector<int>(LENCOL + 2)); in ProfileBase() 221 profile[j+1][LENCOL] = lenCoef; in calcGapCoeff() 226 profile[j + 1][LENCOL] = lenCoef; in calcGapCoeff() 240 profile[j + 1][LENCOL] = static_cast<int>(0.5 * lenCoef); in calcGapCoeff() 251 profile[j + 1][LENCOL] *= val; in calcGapCoeff() 261 if (profile[j + 1][LENCOL] <= 0) in calcGapCoeff() 263 profile[j + 1][LENCOL] = 1; in calcGapCoeff() 271 profile[0][LENCOL] = lenCoef; in calcGapCoeff() 276 profile[0][LENCOL] = 0; in calcGapCoeff() 278 profile[prfLength][LENCOL] = 0; in calcGapCoeff() [all …]
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H A D | MyersMillerProfileAlign.cpp | 358 cout << (*profile1)[i + 1][GAPCOL] << " " << (*profile1)[i + 1][LENCOL] in profileAlign() 399 cout << (*profile2)[i + 1][GAPCOL] << " " << (*profile2)[i + 1][LENCOL] in profileAlign() 1152 h = (*profile2)[j][LENCOL]; in extPenalty1() 1182 h += (*profile2)[ix + j][LENCOL]; in gapPenalty1() 1225 h = (*profile1)[i][LENCOL]; in extPenalty2() 1255 h += (*profile1)[ix + i][LENCOL]; in gapPenalty2()
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H A D | ProfileStandard.cpp | 49 profile.resize(prfLength + 2, vector<int>(LENCOL + 2)); in calcStandardProfile()
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H A D | LowScoreSegProfile.cpp | 19 profile.resize(prfLength + 2, vector<int>(LENCOL + 2)); in LowScoreSegProfile()
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/dports/biology/clustalw/clustalw-2.1/src/general/ |
H A D | clustalw.h | 242 const int LENCOL = 33; /* position of gap extension penalty in profile */ variable
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/dports/math/R-cran-lpSolve/lpSolve/src/ |
H A D | lusol1.h | 39 int I, J, K, KP1, L, LAST, LENCOL, IMAX, JMAX, JLAST, JNEW; local 50 LENCOL = M+1; 57 LENCOL--; 65 L = idamaxlpsolve(LENCOL,DA+DAPOS(K,J)-LUSOL_ARRAYOFFSET,1)+K-1; 232 int I, J, K, KP1, L, LAST, LENCOL; local 249 LENCOL = (M-K)+1; 251 L = (idamaxlpsolve(LENCOL,DA+DAPOS(K,K)-LUSOL_ARRAYOFFSET,1)+K)-1;
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/dports/math/lp_solve/lp_solve_5.5/bfp/bfp_LUSOL/LUSOL/ |
H A D | lusol1.c | 39 int I, J, K, KP1, L, LAST, LENCOL, IMAX, JMAX, JLAST, JNEW; local 50 LENCOL = M+1; 57 LENCOL--; 65 L = idamax(LENCOL,DA+DAPOS(K,J)-LUSOL_ARRAYOFFSET,1)+K-1; 232 int I, J, K, KP1, L, LAST, LENCOL; local 249 LENCOL = (M-K)+1; 251 L = (idamax(LENCOL,DA+DAPOS(K,K)-LUSOL_ARRAYOFFSET,1)+K)-1;
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