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Searched refs:LnPriorRatio (Results 1 – 6 of 6) sorted by relevance

/dports/biology/mrbayes/MrBayes-3.2.7/src/
H A Dbayes.h542 LnPriorRatioFxn LnPriorRatio; member
717 LnPriorRatioFxn LnPriorRatio; /* ln prior prob ratio function */ member
H A Dcommand.c1296 calibrationPtr->LnPriorRatio = defaultCalibration.LnPriorRatio; in DoCalibrateParm()
1528 calibrationPtr->LnPriorRatio = &LnProbRatioFix; in DoCalibrateParm()
1535 calibrationPtr->LnPriorRatio = &LnProbRatioUniform; in DoCalibrateParm()
1542 calibrationPtr->LnPriorRatio = &LnProbRatioOffsetExponential_Param_Offset_Mean; in DoCalibrateParm()
1549 calibrationPtr->LnPriorRatio = &LnProbRatioTruncatedNormal_Param_Trunc_Mean_Sd; in DoCalibrateParm()
1556 calibrationPtr->LnPriorRatio = &LnProbRatioLognormal_Param_Mean_Sd; in DoCalibrateParm()
1563 calibrationPtr->LnPriorRatio = &LnProbRatioOffsetLognormal_Param_Offset_Mean_Sd; in DoCalibrateParm()
1570 calibrationPtr->LnPriorRatio = &LnProbRatioGamma_Param_Mean_Sd; in DoCalibrateParm()
1577 calibrationPtr->LnPriorRatio = &LnProbRatioOffsetGamma_Param_Offset_Mean_Sd; in DoCalibrateParm()
2523 nodeCalibration[numDefinedConstraints].LnPriorRatio = defaultCalibration.LnPriorRatio; in DoConstraint()
H A Dbayes.c808 defaultModel.treeAgePr.LnPriorRatio = &LnProbRatioGamma_Param_Mean_Sd; in InitializeMrBayes()
H A Dmodel.c18308 p->LnPriorRatio = NULL; in SetModelParams()
19497 p->LnPriorRatio = &LnProbRatioUniform; in SetModelParams()
19511 p->LnPriorRatio = &LnProbRatioLognormal; in SetModelParams()
19518 p->LnPriorRatio = &LnProbRatioGamma; in SetModelParams()
19525 p->LnPriorRatio = NULL; in SetModelParams()
19558 p->LnPriorRatio = &LnProbRatioUniform; in SetModelParams()
19567 p->LnPriorRatio = &LnProbRatioExponential; in SetModelParams()
19584 p->LnPriorRatio = &LnProbRatioFix; in SetModelParams()
19890 p->LnPriorRatio = &LnProbRatioLognormal; in SetModelParams()
19904 p->LnPriorRatio = &LnProbRatioGamma; in SetModelParams()
[all …]
H A Dproposal.c5207 (*lnPriorRatio) = newLnPrior - oldLnPrior + param->LnPriorRatio(newG, oldG, param->priorParams); in Move_Growth_M()
13656 (*lnPriorRatio) = param->LnPriorRatio(newN, oldN, param->priorParams); in Move_PopSize_M()
13695 (*lnPriorRatio) = param->LnPriorRatio(newX, oldX, param->priorParams); in Move_PosRealLognormal()
13748 (*lnPriorRatio) = param->LnPriorRatio(newX, oldX, param->priorParams); in Move_PosRealMultiplier()
16245 (*lnPriorRatio) = param->LnPriorRatio(newX, oldX, param->priorParams); in Move_RealNormal()
16297 (*lnPriorRatio) = param->LnPriorRatio(newX, oldX, param->priorParams); in Move_RealSlider()
H A Dmcmc.c7435 … (*lnPriorRatio) += p->calibration->LnPriorRatio(p->age, q->age, p->calibration->priorParams); in LogClockTreePriorRatio()