Searched refs:LnPriorRatio (Results 1 – 6 of 6) sorted by relevance
/dports/biology/mrbayes/MrBayes-3.2.7/src/ |
H A D | bayes.h | 542 LnPriorRatioFxn LnPriorRatio; member 717 LnPriorRatioFxn LnPriorRatio; /* ln prior prob ratio function */ member
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H A D | command.c | 1296 calibrationPtr->LnPriorRatio = defaultCalibration.LnPriorRatio; in DoCalibrateParm() 1528 calibrationPtr->LnPriorRatio = &LnProbRatioFix; in DoCalibrateParm() 1535 calibrationPtr->LnPriorRatio = &LnProbRatioUniform; in DoCalibrateParm() 1542 calibrationPtr->LnPriorRatio = &LnProbRatioOffsetExponential_Param_Offset_Mean; in DoCalibrateParm() 1549 calibrationPtr->LnPriorRatio = &LnProbRatioTruncatedNormal_Param_Trunc_Mean_Sd; in DoCalibrateParm() 1556 calibrationPtr->LnPriorRatio = &LnProbRatioLognormal_Param_Mean_Sd; in DoCalibrateParm() 1563 calibrationPtr->LnPriorRatio = &LnProbRatioOffsetLognormal_Param_Offset_Mean_Sd; in DoCalibrateParm() 1570 calibrationPtr->LnPriorRatio = &LnProbRatioGamma_Param_Mean_Sd; in DoCalibrateParm() 1577 calibrationPtr->LnPriorRatio = &LnProbRatioOffsetGamma_Param_Offset_Mean_Sd; in DoCalibrateParm() 2523 nodeCalibration[numDefinedConstraints].LnPriorRatio = defaultCalibration.LnPriorRatio; in DoConstraint()
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H A D | bayes.c | 808 defaultModel.treeAgePr.LnPriorRatio = &LnProbRatioGamma_Param_Mean_Sd; in InitializeMrBayes()
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H A D | model.c | 18308 p->LnPriorRatio = NULL; in SetModelParams() 19497 p->LnPriorRatio = &LnProbRatioUniform; in SetModelParams() 19511 p->LnPriorRatio = &LnProbRatioLognormal; in SetModelParams() 19518 p->LnPriorRatio = &LnProbRatioGamma; in SetModelParams() 19525 p->LnPriorRatio = NULL; in SetModelParams() 19558 p->LnPriorRatio = &LnProbRatioUniform; in SetModelParams() 19567 p->LnPriorRatio = &LnProbRatioExponential; in SetModelParams() 19584 p->LnPriorRatio = &LnProbRatioFix; in SetModelParams() 19890 p->LnPriorRatio = &LnProbRatioLognormal; in SetModelParams() 19904 p->LnPriorRatio = &LnProbRatioGamma; in SetModelParams() [all …]
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H A D | proposal.c | 5207 (*lnPriorRatio) = newLnPrior - oldLnPrior + param->LnPriorRatio(newG, oldG, param->priorParams); in Move_Growth_M() 13656 (*lnPriorRatio) = param->LnPriorRatio(newN, oldN, param->priorParams); in Move_PopSize_M() 13695 (*lnPriorRatio) = param->LnPriorRatio(newX, oldX, param->priorParams); in Move_PosRealLognormal() 13748 (*lnPriorRatio) = param->LnPriorRatio(newX, oldX, param->priorParams); in Move_PosRealMultiplier() 16245 (*lnPriorRatio) = param->LnPriorRatio(newX, oldX, param->priorParams); in Move_RealNormal() 16297 (*lnPriorRatio) = param->LnPriorRatio(newX, oldX, param->priorParams); in Move_RealSlider()
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H A D | mcmc.c | 7435 … (*lnPriorRatio) += p->calibration->LnPriorRatio(p->age, q->age, p->calibration->priorParams); in LogClockTreePriorRatio()
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