RandLong (reference) in projects: dports

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Searched refs:RandLong (Results 1 – 15 of 15) sorted by relevance

/dports/biology/mrbayes/MrBayes-3.2.7/src/
H A D	proposal.h	4 int Move_Aamodel (Param param, int chain, RandLong seed, MrBFlt lnPriorRatio, MrBFlt lnProp… 5 int Move_AddBranch (Param param, int chain, RandLong seed, MrBFlt lnPriorRatio, MrBFlt lnPr… 6 int Move_Adgamma (Param param, int chain, RandLong seed, MrBFlt lnPriorRatio, MrBFlt lnProp… 8 int Move_Beta (Param param, int chain, RandLong seed, MrBFlt lnPriorRatio, MrBFlt lnProposa… 9 int Move_Beta_M (Param param, int chain, RandLong seed, MrBFlt lnPriorRatio, MrBFlt lnPropo… 10 int Move_BrLen (Param param, int chain, RandLong seed, MrBFlt lnPriorRatio, MrBFlt lnPropos… 13 int Move_CPPRate (Param param, int chain, RandLong seed, MrBFlt lnPriorRatio, MrBFlt lnProp… 19 int Move_ExtSPR (Param param, int chain, RandLong seed, MrBFlt lnPriorRatio, MrBFlt lnPropo… 22 int Move_ExtSS (Param param, int chain, RandLong seed, MrBFlt lnPriorRatio, MrBFlt lnPropos… 36 int Move_NNI (Param param, int chain, RandLong seed, MrBFlt lnPriorRatio, MrBFlt lnProposal… [all …]
H A D	best.h	15 int FillSpeciesTreeParams (RandLong* seed, int from, int to); 20 int Move_GeneTree1 (Param param, int chain, RandLong seed, MrBFlt lnPriorRatio, MrBFlt lnPr… 21 int Move_GeneTree2 (Param param, int chain, RandLong seed, MrBFlt lnPriorRatio, MrBFlt lnPr… 22 int Move_GeneTree3 (Param param, int chain, RandLong seed, MrBFlt lnPriorRatio, MrBFlt lnPr… 23 int Move_NodeSliderGeneTree (Param param, int chain, RandLong seed, MrBFlt lnPriorRatio, MrB… 24 int Move_SpeciesTree (Param param, int chain, RandLong seed, MrBFlt lnPriorRatio, MrBFlt *ln…
H A D	model.h	`30 int FillNormalParams (RandLong seed, int fromChain, int toChain); 32 void FillStdStateFreqs (int chfrom, int chto, RandLong seed); 33 int FillTopologySubParams (Param param, int chn, int state, RandLong seed); 34 int FillTreeParams (RandLong seed, int fromChain, int toChain); 51 int SetUpAnalysis (RandLong seed);`
H A D	utils.h	120 int BuildRandomRTopology (Tree t, RandLong seed); 121 int BuildRandomUTopology (Tree t, RandLong seed); 150 int GetRandomEmbeddedSubtree (Tree t, int nTerminals, RandLong seed, int nEmbeddedTrees); 153 int InitCalibratedBrlens (Tree t, MrBFlt minLength, RandLong seed); 172 int RandPerturb (Tree t, int nPert, RandLong seed); 173 int RandResolve (Tree tt, PolyTree t, RandLong seed, int destinationIsRooted); 223 void DirichletRandomVariable (MrBFlt alp, MrBFlt z, int n, RandLong seed); 271 MrBFlt LogNormalRandomVariable (MrBFlt mean, MrBFlt var, RandLong seed); 279 MrBFlt PsiGammaRandomVariable (MrBFlt alpha, RandLong seed); 281 MrBFlt RandomNumber (RandLong seed);
H A D	bayes.c	87 RandLong globalSeed; /* seed that is initialized at start up / 95 RandLong runIDSeed; / seed used only for determining run ID [stamp] / 96 RandLong swapSeed; / seed used only for determining which to swap */ 491 globalSeed = (RandLong)curTime; in GetTimeSeed() 505 swapSeed = (RandLong)curTime; in GetTimeSeed() 519 runIDSeed = (RandLong)curTime; in GetTimeSeed() 531 globalSeed = (RandLong)curTime; in GetTimeSeed() 537 swapSeed = (RandLong)curTime; in GetTimeSeed() 543 runIDSeed = (RandLong)curTime; in GetTimeSeed()
H A D	proposal.c	65 int Move_Aamodel (Param param, int chain, RandLong seed, MrBFlt lnPriorRatio, MrBFlt lnProposal… in Move_Aamodel() 322 int Move_Adgamma (Param param, int chain, RandLong seed, MrBFlt lnPriorRatio, MrBFlt lnProposal… in Move_Adgamma() 389 int Move_Beta (Param param, int chain, RandLong seed, MrBFlt lnPriorRatio, MrBFlt lnProposalRat… in Move_Beta() 505 int Move_BrLen (Param param, int chain, RandLong seed, MrBFlt lnPriorRatio, MrBFlt lnProposalRa… in Move_BrLen() 868 int Move_CPPRate (Param param, int chain, RandLong seed, MrBFlt lnPriorRatio, MrBFlt lnProposal… in Move_CPPRate() 2268 int Move_ExtSPR (Param param, int chain, RandLong seed, MrBFlt lnPriorRatio, MrBFlt lnProposalR… in Move_ExtSPR() 3667 int Move_ExtSS (Param param, int chain, RandLong seed, MrBFlt lnPriorRatio, MrBFlt lnProposalRa… in Move_ExtSS() 5786 int Move_Local (Param param, int chain, RandLong seed, MrBFlt lnPriorRatio, MrBFlt lnProposalRa… in Move_Local() 6591 int Move_LSPR (Param param, int chain, RandLong seed, MrBFlt lnPriorRatio, MrBFlt lnProposalRat… 7538 int Move_NNI (Param param, int chain, RandLong seed, MrBFlt lnPriorRatio, MrBFlt lnProposalRati… in Move_NNI() [all …]
H A D	bayes.h	`103 typedef long RandLong; typedef 879 typedef int (MoveFxn)(Param param, int chain, RandLong seed, MrBFlt lnPriorRatio, MrBFlt lnProp… 1611 extern RandLong globalSeed; /* seed that is initialized at star… 1698 extern RandLong runIDSeed; /* seed used only for generating ru… 1709 extern RandLong swapSeed; /* seed used only for determining w…`
H A D	best.c	39 int ModifyDepthMatrix (double expRate, double depthMatrix, RandLong seed); 138 int FillSpeciesTreeParams (RandLong seed, int fromChain, int toChain) in FillSpeciesTreeParams() 1085 int ModifyDepthMatrix (double expRate, double depthMatrix, RandLong seed) in ModifyDepthMatrix() 1115 int Move_GeneTree1 (Param param, int chain, RandLong seed, MrBFlt lnPriorRatio, MrBFlt lnPropos… in Move_GeneTree1() 1219 int Move_GeneTree2 (Param param, int chain, RandLong seed, MrBFlt lnPriorRatio, MrBFlt lnPropos… in Move_GeneTree2() 1323 int Move_GeneTree3 (Param param, int chain, RandLong seed, MrBFlt lnPriorRatio, MrBFlt lnPropos… in Move_GeneTree3() 1422 int Move_NodeSliderGeneTree (Param param, int chain, RandLong seed, MrBFlt lnPriorRatio, MrBFlt … in Move_NodeSliderGeneTree() 1679 int Move_SpeciesTree (Param param, int chain, RandLong seed, MrBFlt lnPriorRatio, MrBFlt lnProp… in Move_SpeciesTree()
H A D	utils.c	121 MrBFlt RndGamma (MrBFlt s, RandLong seed); 122 MrBFlt RndGamma1 (MrBFlt s, RandLong seed); 123 MrBFlt RndGamma2 (MrBFlt s, RandLong seed); 2545 int BuildRandomRTopology (Tree t, RandLong seed) in BuildRandomRTopology() 2615 int BuildRandomUTopology (Tree t, RandLong seed) in BuildRandomUTopology() 5797 int RandPerturb (Tree t, int nPert, RandLong seed) in RandPerturb() 13711 MrBFlt RandomNumber (RandLong seed) in RandomNumber() 13713 RandLong lo, hi, test; in RandomNumber() 13731 MrBFlt RndGamma (MrBFlt s, RandLong seed) in RndGamma() 13754 MrBFlt RndGamma1 (MrBFlt s, RandLong seed) in RndGamma1() [all …]
H A D	mcmc.c	123 int AttemptSwap (int swapA, int swapB, RandLong seed); 125 int BuildStepwiseTree (Tree t, int chain, RandLong seed); 156 MrBFlt GibbsSampleGamma (int chain, int division, RandLong seed); 184 int PickProposal (RandLong seed, int chainIndex); 231 int RunChain (RandLong seed); 598 int AttemptSwap (int swapA, int swapB, RandLong seed) in AttemptSwap() 1399 int BuildParsTrees (RandLong seed, int fromChain, int toChain) in BuildParsTrees() 1451 int BuildStepwiseTree (Tree t, int chain, RandLong seed) { in BuildStepwiseTree() 2282 RandLong seed; in DoMcmc() 10107 int PickProposal (RandLong *seed, int chainIndex) in PickProposal() [all …]
H A D	model.c	86 int ProcessStdChars (RandLong seed); 10877 int FillNormalParams (RandLong seed, int fromChain, int toChain) in FillNormalParams() 11566 void FillStdStateFreqs (int chfrom, int chto, RandLong seed) in FillStdStateFreqs() 11658 int FillTopologySubParams (Param param, int chn, int state, RandLong seed) in FillTopologySubParams() 12081 int FillTreeParams (RandLong seed, int fromChain, int toChain) in FillTreeParams() 15568 int ProcessStdChars (RandLong seed) in ProcessStdChars() 20255 int SetUpAnalysis (RandLong seed) in SetUpAnalysis()
H A D	sumpt.c	`3655 RandLong temporarySeed; in DoCompareTree() 4282 temporarySeed = (RandLong)curTime; in DoCompareTree()`
/dports/net/scapy/scapy-2.4.5/scapy/
H A D	volatile.py	`313 class RandLong(RandNum): class`
H A D	fields.py	`29 RandIP, RandIP6, RandLong, RandMAC, RandNum, RandShort, RandSInt, \ 289 "Q": RandLong, "q": RandSLong}[fmtt]()`
/dports/net/scapy/scapy-2.4.5/scapy/contrib/
H A D	http2.py	`487 return volatile.RandLong()`